Wall clock time and date at job start Tue Mar 31 2020 23:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86792 * 120.00190 * 2 1 4 4 H 1.48495 * 109.47546 * 240.00107 * 3 2 1 5 5 H 1.48495 * 109.47311 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46751 * 119.99964 * 3 2 1 7 7 C 1.38810 * 119.99376 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99556 * 170.57085 * 7 2 1 9 9 N 1.36939 * 120.00060 * 350.56779 * 7 2 1 10 10 C 1.47828 * 127.85767 * 164.33758 * 9 7 2 11 11 C 1.54389 * 104.68905 * 140.39308 * 10 9 7 12 12 H 1.08997 * 118.18369 * 244.26150 * 11 10 9 13 13 C 1.52998 * 118.12318 * 87.25228 * 11 10 9 14 14 H 1.08998 * 117.44671 * 16.11001 * 13 11 10 15 15 C 1.53004 * 117.44568 * 160.85422 * 13 11 10 16 16 N 1.46497 * 109.47200 * 185.16838 * 15 13 11 17 17 C 1.34783 * 119.99899 * 180.02562 * 16 15 13 18 18 O 1.21286 * 119.99968 * 359.97438 * 17 16 15 19 19 C 1.50700 * 119.99912 * 179.97438 * 17 16 15 20 20 N 1.46505 * 109.46790 * 179.97438 * 19 17 16 21 21 C 1.36828 * 125.06521 * 264.69649 * 20 19 17 22 22 C 1.34231 * 109.93122 * 179.81749 * 21 20 19 23 23 C 1.46486 * 106.99645 * 0.43548 * 22 21 20 24 24 C 1.39630 * 134.03226 * 179.76107 * 23 22 21 25 25 C 1.36623 * 119.76633 * 179.97438 * 24 23 22 26 26 C 1.38830 * 120.52727 * 359.97438 * 25 24 23 27 27 C 1.37747 * 120.66852 * 359.97378 * 26 25 24 28 28 C 1.37689 * 125.05781 * 85.00499 * 20 19 17 29 29 C 1.52999 * 60.49847 * 268.47958 * 13 11 10 30 30 H 1.09002 * 119.53876 * 248.21015 * 29 13 11 31 31 C 1.48144 * 127.83974 * 344.33359 * 9 7 2 32 32 H 0.97009 * 119.99459 * 0.02562 * 1 2 3 33 33 H 1.08995 * 110.32441 * 21.61207 * 10 9 7 34 34 H 1.08997 * 110.42393 * 259.22459 * 10 9 7 35 35 H 1.09002 * 109.47003 * 305.16905 * 15 13 11 36 36 H 1.08999 * 109.46951 * 65.16235 * 15 13 11 37 37 H 0.96995 * 120.00116 * 359.97438 * 16 15 13 38 38 H 1.08998 * 109.47145 * 299.99646 * 19 17 16 39 39 H 1.08998 * 109.46955 * 60.00534 * 19 17 16 40 40 H 1.08004 * 125.03161 * 359.97438 * 21 20 19 41 41 H 1.08001 * 126.50602 * 180.14825 * 22 21 20 42 42 H 1.08003 * 120.11773 * 0.02562 * 24 23 22 43 43 H 1.08001 * 119.73962 * 180.02562 * 25 24 23 44 44 H 1.08002 * 119.66821 * 180.02562 * 26 25 24 45 45 H 1.08004 * 120.11417 * 180.02562 * 27 26 25 46 46 H 1.08998 * 110.40224 * 100.81037 * 31 9 7 47 47 H 1.08990 * 110.40920 * 338.38172 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2854 2.7464 0.0006 6 1 3.1040 1.6962 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0793 -1.2085 -0.1538 9 7 1.3393 -2.3801 0.1933 10 6 1.8167 -3.7519 -0.0815 11 6 1.2915 -4.5936 1.1015 12 1 2.0197 -5.0500 1.7719 13 6 -0.1131 -5.1906 0.9944 14 1 -0.5693 -5.2273 0.0051 15 6 -0.4557 -6.3583 1.9218 16 7 -1.7874 -6.8708 1.5902 17 6 -2.3023 -7.9067 2.2819 18 8 -1.6628 -8.4149 3.1785 19 6 -3.6725 -8.4336 1.9413 20 7 -4.0003 -9.5518 2.8292 21 6 -3.8132 -10.8739 2.5304 22 6 -4.2131 -11.6367 3.5599 23 6 -4.7055 -10.7294 4.5992 24 6 -5.2452 -10.9152 5.8736 25 6 -5.6183 -9.8311 6.6167 26 6 -5.4647 -8.5457 6.1153 27 6 -4.9335 -8.3396 4.8612 28 6 -4.5482 -9.4290 4.0864 29 6 0.0734 -3.8133 1.6342 30 1 -0.1068 -3.6879 2.7018 31 6 -0.0301 -2.5690 0.7261 32 1 -0.4850 0.8402 -0.0004 33 1 2.9060 -3.7750 -0.1103 34 1 1.4029 -4.1176 -1.0213 35 1 0.2810 -7.1516 1.7945 36 1 -0.4454 -6.0156 2.9565 37 1 -2.2990 -6.4641 0.8735 38 1 -4.4088 -7.6401 2.0686 39 1 -3.6829 -8.7766 0.9067 40 1 -3.4021 -11.2480 1.6044 41 1 -4.1823 -12.7151 3.6105 42 1 -5.3665 -11.9122 6.2707 43 1 -6.0353 -9.9753 7.6025 44 1 -5.7639 -7.6987 6.7149 45 1 -4.8177 -7.3357 4.4801 46 1 -0.7328 -2.7495 -0.0873 47 1 -0.3352 -1.6988 1.3071 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330365548.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:27 Heat of formation + Delta-G solvation = 93.378366 kcal Electronic energy + Delta-G solvation = -27661.270961 eV Core-core repulsion = 23811.552379 eV Total energy + Delta-G solvation = -3849.718582 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.60508 -39.79657 -38.79651 -37.13128 -35.10560 -33.49627 -33.11982 -31.06531 -30.58869 -29.07652 -28.15562 -27.20691 -26.47125 -24.72498 -22.87394 -21.80230 -21.27030 -21.15051 -20.42193 -19.80798 -19.33439 -17.69320 -17.43744 -16.87621 -16.69585 -15.88724 -15.63821 -15.56685 -15.00815 -14.70789 -14.26643 -14.18757 -14.09035 -13.73778 -13.53283 -13.43652 -13.14687 -12.93261 -12.78514 -12.72700 -12.36336 -11.90293 -11.78791 -11.74875 -11.30938 -11.17548 -11.01528 -10.85721 -10.77095 -10.36767 -10.28505 -10.20734 -9.79776 -9.77920 -9.52993 -9.18848 -9.08044 -8.69063 -8.32226 -7.83702 -6.92440 -5.85277 -3.19528 0.98700 1.47849 2.28255 2.31425 2.58690 3.05939 3.35293 3.40178 3.41161 3.79953 4.05596 4.32563 4.38741 4.41680 4.51331 4.59638 4.64112 4.80566 4.86318 4.97688 5.23699 5.27052 5.29824 5.31140 5.36004 5.43309 5.47815 5.63278 5.69084 5.76758 5.81247 5.84389 5.88114 5.90795 6.16294 6.20386 6.31904 6.46515 6.47577 6.59356 6.59892 6.61302 6.64428 6.85268 6.99792 7.05768 7.26716 7.29248 7.46634 7.66024 7.94473 8.15702 9.05751 9.68788 10.45293 11.29111 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023413 B = 0.001817 C = 0.001740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.622598 B =15404.157505 C =16092.097266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.006 4.006 3 Si 0.914 3.086 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.229 4.229 8 H 0.076 0.924 9 N -0.594 5.594 10 C 0.155 3.845 11 C -0.165 4.165 12 H 0.104 0.896 13 C -0.151 4.151 14 H 0.103 0.897 15 C 0.156 3.844 16 N -0.720 5.720 17 C 0.489 3.511 18 O -0.523 6.523 19 C 0.091 3.909 20 N -0.469 5.469 21 C 0.059 3.941 22 C -0.204 4.204 23 C -0.108 4.108 24 C -0.073 4.073 25 C -0.149 4.149 26 C -0.101 4.101 27 C -0.125 4.125 28 C 0.109 3.891 29 C -0.168 4.168 30 H 0.102 0.898 31 C 0.184 3.816 32 H 0.255 0.745 33 H 0.051 0.949 34 H 0.024 0.976 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.404 0.596 38 H 0.116 0.884 39 H 0.121 0.879 40 H 0.167 0.833 41 H 0.146 0.854 42 H 0.120 0.880 43 H 0.120 0.880 44 H 0.124 0.876 45 H 0.116 0.884 46 H 0.023 0.977 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.409 -21.511 5.568 25.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.203 4.203 3 Si 0.744 3.256 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.357 4.357 8 H 0.094 0.906 9 N -0.317 5.317 10 C 0.029 3.971 11 C -0.185 4.185 12 H 0.122 0.878 13 C -0.170 4.170 14 H 0.121 0.879 15 C 0.033 3.967 16 N -0.372 5.372 17 C 0.272 3.728 18 O -0.398 6.398 19 C -0.035 4.035 20 N -0.152 5.152 21 C -0.065 4.065 22 C -0.228 4.228 23 C -0.113 4.113 24 C -0.092 4.092 25 C -0.168 4.168 26 C -0.120 4.120 27 C -0.145 4.145 28 C 0.004 3.996 29 C -0.188 4.188 30 H 0.120 0.880 31 C 0.058 3.942 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.042 0.958 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.238 0.762 38 H 0.134 0.866 39 H 0.139 0.861 40 H 0.184 0.816 41 H 0.164 0.836 42 H 0.138 0.862 43 H 0.138 0.862 44 H 0.142 0.858 45 H 0.134 0.866 46 H 0.041 0.959 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.852 -21.334 5.955 25.121 hybrid contribution 0.350 1.138 -0.416 1.261 sum -11.503 -20.196 5.539 23.893 Atomic orbital electron populations 1.69893 1.05075 1.25577 1.55670 1.24901 0.95665 0.98027 1.01674 0.86179 0.78563 0.82847 0.78055 1.20948 1.21520 1.21042 1.18954 0.90866 0.82389 1.43460 0.90598 1.45123 1.13716 0.99992 1.72868 1.21078 0.97282 0.85980 0.92810 1.23845 0.89639 1.02195 1.02828 0.87793 1.22516 1.00976 0.93660 0.99869 0.87879 1.20881 0.82572 0.94850 0.98410 1.45992 1.19605 1.33967 1.37684 1.20920 0.88398 0.80636 0.82815 1.90788 1.61025 1.57994 1.29960 1.21589 0.95636 0.90679 0.95610 1.43348 1.53422 1.05086 1.13336 1.21762 1.02560 0.81585 1.00580 1.21634 1.09185 0.98539 0.93490 1.19198 1.04397 0.92244 0.95446 1.20245 0.97767 0.98869 0.92302 1.20610 1.03530 0.92431 1.00218 1.20794 0.99295 0.97264 0.94668 1.20028 1.03370 0.96244 0.94879 1.18189 0.99940 0.95666 0.85827 1.24361 1.02333 0.92118 0.99941 0.88025 1.21053 0.86918 0.92810 0.93421 0.93497 0.93078 0.95839 0.91235 0.91327 0.76175 0.86586 0.86103 0.81602 0.83592 0.86211 0.86181 0.85846 0.86625 0.95912 0.89303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.33 10.88 55.49 0.60 -25.72 16 2 C -0.01 -0.15 5.39 -17.43 -0.09 -0.25 16 3 Si 0.91 21.65 29.56 -169.99 -5.03 16.62 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.23 -6.28 10.35 -15.06 -0.16 -6.43 16 8 H 0.08 2.01 7.85 -52.48 -0.41 1.60 16 9 N -0.59 -14.89 3.37 -169.13 -0.57 -15.46 16 10 C 0.16 3.15 7.02 -2.59 -0.02 3.13 16 11 C -0.16 -2.80 6.85 -89.29 -0.61 -3.41 16 12 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 13 C -0.15 -2.16 5.40 -90.62 -0.49 -2.65 16 14 H 0.10 1.43 8.04 -51.93 -0.42 1.02 16 15 C 0.16 1.97 5.95 -4.04 -0.02 1.94 16 16 N -0.72 -7.30 5.56 -60.29 -0.33 -7.64 16 17 C 0.49 5.51 7.90 -10.98 -0.09 5.42 16 18 O -0.52 -8.44 16.42 5.55 0.09 -8.35 16 19 C 0.09 0.70 6.48 -5.19 -0.03 0.67 16 20 N -0.47 -4.91 2.27 -115.71 -0.26 -5.17 16 21 C 0.06 0.56 11.27 -16.73 -0.19 0.37 16 22 C -0.20 -2.06 11.08 -37.67 -0.42 -2.48 16 23 C -0.11 -1.29 6.37 -105.14 -0.67 -1.96 16 24 C -0.07 -0.76 10.05 -39.65 -0.40 -1.16 16 25 C -0.15 -1.44 9.97 -39.95 -0.40 -1.84 16 26 C -0.10 -1.02 10.01 -39.54 -0.40 -1.42 16 27 C -0.12 -1.41 10.00 -39.43 -0.39 -1.81 16 28 C 0.11 1.33 6.80 -83.99 -0.57 0.76 16 29 C -0.17 -3.02 6.74 -89.29 -0.60 -3.63 16 30 H 0.10 1.78 8.12 -51.93 -0.42 1.36 16 31 C 0.18 4.25 5.69 -2.41 -0.01 4.24 16 32 H 0.25 7.10 8.31 -40.82 -0.34 6.77 16 33 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.07 0.96 7.94 -51.93 -0.41 0.55 16 37 H 0.40 3.03 8.40 -40.82 -0.34 2.68 16 38 H 0.12 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.12 0.52 8.11 -51.93 -0.42 0.10 16 40 H 0.17 1.01 8.06 -52.48 -0.42 0.59 16 41 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16 42 H 0.12 0.97 8.06 -52.48 -0.42 0.54 16 43 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 44 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 45 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 46 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.09 2.33 6.53 -51.93 -0.34 1.99 16 LS Contribution 393.22 15.07 5.93 5.93 Total: -1.00 -34.79 393.22 -12.11 -46.90 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -6.98 Total: 3.39 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: -5.56 Total: -10.50 kcal Atomic # 7 Polarization: -53.42 SS G_CDS: -0.56 Total: -53.99 kcal Atomic # 8 Polarization: -8.44 SS G_CDS: 0.09 Total: -8.35 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.62 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.79 -12.11 -46.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330365548.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.279 kcal (2) G-P(sol) polarization free energy of solvation -34.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds