Wall clock time and date at job start Tue Mar 31 2020 22:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34224 * 117.00077 * 2 1 4 4 O 1.20833 * 120.00103 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00302 * 180.02562 * 3 2 1 6 6 C 1.53522 * 111.15465 * 299.11151 * 5 3 2 7 7 C 1.54191 * 106.58567 * 240.87610 * 6 5 3 8 8 C 1.54734 * 104.34939 * 335.43613 * 7 6 5 9 9 C 1.54669 * 111.23182 * 180.02562 * 5 3 2 10 10 H 1.09002 * 112.40086 * 19.48486 * 9 5 3 11 11 N 1.47253 * 106.10171 * 256.40428 * 9 5 3 12 12 C 1.34781 * 126.52107 * 150.10836 * 11 9 5 13 13 O 1.21591 * 119.99625 * 0.02562 * 12 11 9 14 14 N 1.34775 * 120.00020 * 179.97438 * 12 11 9 15 15 C 1.46504 * 119.99793 * 180.02562 * 14 12 11 16 16 C 1.50699 * 109.46858 * 180.02562 * 15 14 12 17 17 O 1.21293 * 119.99942 * 359.97438 * 16 15 14 18 18 N 1.34779 * 119.99959 * 180.02562 * 16 15 14 19 19 C 1.37096 * 119.99981 * 179.97438 * 18 16 15 20 20 H 1.07992 * 120.00031 * 359.97438 * 19 18 16 21 21 C 1.38945 * 119.99498 * 179.97438 * 19 18 16 22 22 N 1.31414 * 120.00797 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99670 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47115 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.46902 * 120.00359 * 23 21 19 26 26 H 1.48504 * 109.47249 * 240.00132 * 23 21 19 27 27 C 1.47154 * 106.96229 * 330.06996 * 11 9 5 28 28 C 1.53668 * 111.17801 * 62.59728 * 5 3 2 29 29 H 1.09001 * 109.46626 * 60.00180 * 1 2 3 30 30 H 1.09001 * 109.47153 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47070 * 300.00162 * 1 2 3 32 32 H 1.08996 * 110.04084 * 0.98605 * 6 5 3 33 33 H 1.08997 * 110.04249 * 122.44001 * 6 5 3 34 34 H 1.09001 * 110.79908 * 216.49482 * 7 6 5 35 35 H 1.09003 * 109.99109 * 93.97155 * 7 6 5 36 36 H 1.09006 * 110.64769 * 278.61917 * 8 7 6 37 37 H 1.08998 * 110.65167 * 155.53833 * 8 7 6 38 38 H 0.97000 * 120.00002 * 0.02562 * 14 12 11 39 39 H 1.09001 * 109.46710 * 300.00163 * 15 14 12 40 40 H 1.08997 * 109.46770 * 59.99928 * 15 14 12 41 41 H 0.97008 * 119.99480 * 359.97438 * 18 16 15 42 42 H 0.96990 * 120.00501 * 180.02562 * 22 21 19 43 43 H 1.08998 * 110.09226 * 150.06329 * 27 11 9 44 44 H 1.08998 * 110.09437 * 271.65800 * 27 11 9 45 45 H 1.09005 * 110.23327 * 241.06836 * 28 5 3 46 46 H 1.09001 * 110.22805 * 3.02061 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.1566 0.6080 1.2499 7 6 4.9301 1.7043 2.0098 8 6 5.2950 2.7411 0.9206 9 6 4.0502 2.7439 0.0002 10 1 3.2779 3.4354 0.3371 11 7 4.4932 3.0287 -1.3750 12 6 4.4604 4.2239 -1.9970 13 8 4.0327 5.2013 -1.4135 14 7 4.9025 4.3360 -3.2652 15 6 4.8672 5.6354 -3.9411 16 6 5.4125 5.4896 -5.3384 17 8 5.7935 4.4070 -5.7309 18 7 5.4777 6.5625 -6.1516 19 6 5.9742 6.4300 -7.4226 20 1 6.3134 5.4661 -7.7721 21 6 6.0410 7.5359 -8.2610 22 7 5.6287 8.7090 -7.8357 23 14 6.7181 7.3556 -9.9927 24 1 7.1124 5.9430 -10.2254 25 1 5.6753 7.7464 -10.9751 26 1 7.9045 8.2342 -10.1542 27 6 4.9796 1.7603 -1.9406 28 6 4.1547 0.6456 -1.2731 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 3.3570 0.2008 1.8687 33 1 4.8460 -0.1850 0.9603 34 1 5.8321 1.2962 2.4658 35 1 4.2892 2.1558 2.7671 36 1 6.1804 2.4241 0.3694 37 1 5.4483 3.7254 1.3629 38 1 5.2440 3.5564 -3.7304 39 1 3.8385 5.9925 -3.9882 40 1 5.4750 6.3500 -3.3862 41 1 5.1733 7.4283 -5.8375 42 1 5.6749 9.4809 -8.4211 43 1 4.8233 1.7470 -3.0193 44 1 6.0376 1.6301 -1.7134 45 1 4.7974 -0.1962 -1.0149 46 1 3.3542 0.3197 -1.9372 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001470092641.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:05 Heat of formation + Delta-G solvation = -145.829282 kcal Electronic energy + Delta-G solvation = -30091.729003 eV Core-core repulsion = 25788.495585 eV Total energy + Delta-G solvation = -4303.233418 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.67915 -40.04062 -38.85283 -37.93673 -36.66651 -34.79417 -34.37180 -33.55733 -32.17116 -31.35838 -28.87460 -28.65538 -27.49898 -26.86385 -24.48009 -23.04974 -22.83515 -21.34240 -20.18452 -19.63485 -19.33661 -18.57477 -17.97259 -17.37798 -17.03563 -16.58198 -16.14495 -15.68571 -15.39467 -15.14610 -14.77247 -14.65267 -14.55906 -14.18850 -13.97749 -13.74587 -13.58059 -13.40950 -13.17187 -12.94513 -12.61458 -12.34303 -12.20606 -12.11300 -11.87249 -11.64458 -11.61432 -11.53236 -11.37803 -11.14454 -11.12923 -11.09765 -10.85241 -10.47490 -10.40237 -10.31641 -9.97932 -9.63546 -8.92393 -8.61131 -8.47842 -8.08608 -6.50085 -3.92107 1.91002 2.27995 2.65944 3.10987 3.23039 3.29703 3.35114 3.73450 3.77157 4.05258 4.07123 4.16804 4.28893 4.55460 4.70031 4.72343 4.79380 4.85671 4.87753 4.90954 4.98717 5.15044 5.15795 5.18723 5.22301 5.24113 5.39545 5.47178 5.52557 5.63076 5.67966 5.77044 5.86305 5.92199 6.01157 6.03613 6.08972 6.09960 6.22791 6.77706 7.17861 7.45160 7.47406 7.93995 8.19137 8.46659 8.80666 9.06000 9.41115 9.88874 10.66944 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020430 B = 0.002264 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.232230 B =12366.632184 C =12708.794026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.356 6.356 3 C 0.474 3.526 4 O -0.492 6.492 5 C -0.068 4.068 6 C -0.104 4.104 7 C -0.124 4.124 8 C -0.132 4.132 9 C 0.171 3.829 10 H 0.117 0.883 11 N -0.633 5.633 12 C 0.727 3.273 13 O -0.588 6.588 14 N -0.722 5.722 15 C 0.128 3.872 16 C 0.430 3.570 17 O -0.598 6.598 18 N -0.549 5.549 19 C -0.304 4.304 20 H 0.106 0.894 21 C 0.025 3.975 22 N -0.894 5.894 23 Si 0.932 3.068 24 H -0.267 1.267 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.098 3.902 28 C -0.114 4.114 29 H 0.063 0.937 30 H 0.102 0.898 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.406 0.594 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.396 0.604 42 H 0.274 0.726 43 H 0.082 0.918 44 H 0.075 0.925 45 H 0.098 0.902 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.293 -18.667 19.313 27.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.273 6.273 3 C 0.316 3.684 4 O -0.378 6.378 5 C -0.071 4.071 6 C -0.142 4.142 7 C -0.162 4.162 8 C -0.171 4.171 9 C 0.066 3.934 10 H 0.135 0.865 11 N -0.371 5.371 12 C 0.429 3.571 13 O -0.466 6.466 14 N -0.380 5.380 15 C 0.000 4.000 16 C 0.216 3.784 17 O -0.485 6.485 18 N -0.184 5.184 19 C -0.433 4.433 20 H 0.124 0.876 21 C -0.178 4.178 22 N -0.535 5.535 23 Si 0.759 3.241 24 H -0.192 1.192 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.026 4.026 28 C -0.152 4.152 29 H 0.082 0.918 30 H 0.120 0.880 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.103 0.897 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.244 0.756 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.230 0.770 42 H 0.084 0.916 43 H 0.101 0.899 44 H 0.093 0.907 45 H 0.116 0.884 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.594 -18.030 19.251 26.773 hybrid contribution -0.056 0.210 -1.050 1.072 sum -4.650 -17.820 18.201 25.893 Atomic orbital electron populations 1.23301 0.76178 1.03733 1.02758 1.86487 1.23448 1.33171 1.84198 1.23317 0.91263 0.81486 0.72341 1.90726 1.66680 1.36252 1.44143 1.21674 0.87443 0.98758 0.99177 1.22190 0.99904 0.98315 0.93814 1.22333 1.00287 0.95784 0.97779 1.22867 0.97700 1.00173 0.96360 1.22211 0.96803 0.92572 0.81843 0.86481 1.47505 1.67714 1.07140 1.14696 1.15285 0.78842 0.81817 0.81183 1.90920 1.53524 1.35873 1.66303 1.44782 1.67959 1.12856 1.12390 1.20805 1.02244 0.84647 0.92342 1.19748 0.86077 0.85718 0.86902 1.90482 1.54863 1.26803 1.76359 1.41796 1.54453 1.09443 1.12736 1.19768 1.38314 0.97115 0.88118 0.87645 1.25329 0.97278 0.94652 1.00524 1.69621 1.46380 0.99818 1.37652 0.85761 0.78397 0.78686 0.81249 1.19152 1.20629 1.20615 1.22078 0.98442 0.82838 0.99196 1.22479 1.00183 0.98161 0.94409 0.91773 0.87964 0.91839 0.90637 0.89654 0.90447 0.91164 0.90325 0.90260 0.75601 0.89999 0.89918 0.76995 0.91642 0.89922 0.90712 0.88372 0.90128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 101.05 1.07 1.31 16 2 O -0.36 -3.38 10.51 -39.24 -0.41 -3.79 16 3 C 0.47 5.45 6.24 36.00 0.22 5.67 16 4 O -0.49 -7.45 15.29 -18.76 -0.29 -7.74 16 5 C -0.07 -0.64 0.92 -154.17 -0.14 -0.78 16 6 C -0.10 -0.67 6.10 -25.84 -0.16 -0.83 16 7 C -0.12 -0.82 6.83 -25.20 -0.17 -0.99 16 8 C -0.13 -1.23 6.37 -24.86 -0.16 -1.39 16 9 C 0.17 2.06 3.15 -65.68 -0.21 1.86 16 10 H 0.12 1.77 6.83 -51.93 -0.35 1.42 16 11 N -0.63 -8.74 2.91 -168.07 -0.49 -9.23 16 12 C 0.73 12.99 8.52 -86.92 -0.74 12.25 16 13 O -0.59 -12.49 16.60 5.29 0.09 -12.41 16 14 N -0.72 -12.98 5.49 -66.41 -0.36 -13.34 16 15 C 0.13 2.49 6.15 -5.19 -0.03 2.46 16 16 C 0.43 10.05 7.85 -10.98 -0.09 9.96 16 17 O -0.60 -15.42 15.24 5.55 0.08 -15.34 16 18 N -0.55 -13.82 5.29 -10.97 -0.06 -13.88 16 19 C -0.30 -8.31 9.68 -14.94 -0.14 -8.46 16 20 H 0.11 3.00 7.16 -52.49 -0.38 2.63 16 21 C 0.02 0.66 5.50 -17.47 -0.10 0.56 16 22 N -0.89 -24.12 13.05 55.50 0.72 -23.39 16 23 Si 0.93 20.64 29.55 -169.99 -5.02 15.62 16 24 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 25 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 26 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 27 C 0.10 0.99 6.24 -3.22 -0.02 0.97 16 28 C -0.11 -0.91 6.27 -25.92 -0.16 -1.07 16 29 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 30 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 32 H 0.07 0.47 7.69 -51.93 -0.40 0.07 16 33 H 0.08 0.40 7.10 -51.93 -0.37 0.03 16 34 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.70 7.28 -51.93 -0.38 0.32 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.41 7.05 5.84 -40.82 -0.24 6.81 16 39 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 40 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 41 H 0.40 9.62 7.90 -40.82 -0.32 9.29 16 42 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 43 H 0.08 0.87 7.03 -51.93 -0.37 0.50 16 44 H 0.07 0.63 7.71 -51.93 -0.40 0.23 16 45 H 0.10 0.51 7.11 -51.93 -0.37 0.14 16 46 H 0.08 0.68 7.73 -51.93 -0.40 0.28 16 LS Contribution 378.42 15.07 5.70 5.70 Total: -1.00 -34.76 378.42 -7.35 -42.11 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: -6.49 Total: 14.16 kcal Atomic # 6 Polarization: 22.34 SS G_CDS: -0.83 Total: 21.51 kcal Atomic # 7 Polarization: -59.65 SS G_CDS: -0.19 Total: -59.84 kcal Atomic # 8 Polarization: -38.74 SS G_CDS: -0.53 Total: -39.27 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.76 -7.35 -42.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001470092641.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.721 kcal (2) G-P(sol) polarization free energy of solvation -34.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds