Wall clock time and date at job start Tue Mar 31 2020 22:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34224 * 117.00077 * 2 1 4 4 O 1.20833 * 120.00103 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00302 * 180.02562 * 3 2 1 6 6 C 1.53522 * 111.15465 * 299.11151 * 5 3 2 7 7 C 1.54191 * 106.58567 * 240.87610 * 6 5 3 8 8 C 1.54734 * 104.34939 * 335.43613 * 7 6 5 9 9 C 1.54669 * 111.23182 * 180.02562 * 5 3 2 10 10 H 1.09002 * 112.40086 * 19.48486 * 9 5 3 11 11 N 1.47253 * 106.10171 * 256.40428 * 9 5 3 12 12 C 1.34781 * 126.52107 * 150.10836 * 11 9 5 13 13 O 1.21591 * 119.99625 * 0.02562 * 12 11 9 14 14 N 1.34775 * 120.00020 * 179.97438 * 12 11 9 15 15 C 1.46504 * 119.99793 * 180.02562 * 14 12 11 16 16 C 1.50699 * 109.46858 * 180.02562 * 15 14 12 17 17 O 1.21293 * 119.99942 * 359.97438 * 16 15 14 18 18 N 1.34779 * 119.99959 * 180.02562 * 16 15 14 19 19 C 1.37096 * 119.99981 * 179.97438 * 18 16 15 20 20 H 1.07992 * 120.00031 * 359.97438 * 19 18 16 21 21 C 1.38945 * 119.99498 * 179.97438 * 19 18 16 22 22 N 1.31414 * 120.00797 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99670 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47115 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.46902 * 120.00359 * 23 21 19 26 26 H 1.48504 * 109.47249 * 240.00132 * 23 21 19 27 27 C 1.47154 * 106.96229 * 330.06996 * 11 9 5 28 28 C 1.53668 * 111.17801 * 62.59728 * 5 3 2 29 29 H 1.09001 * 109.46626 * 60.00180 * 1 2 3 30 30 H 1.09001 * 109.47153 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47070 * 300.00162 * 1 2 3 32 32 H 1.08996 * 110.04084 * 0.98605 * 6 5 3 33 33 H 1.08997 * 110.04249 * 122.44001 * 6 5 3 34 34 H 1.09001 * 110.79908 * 216.49482 * 7 6 5 35 35 H 1.09003 * 109.99109 * 93.97155 * 7 6 5 36 36 H 1.09006 * 110.64769 * 278.61917 * 8 7 6 37 37 H 1.08998 * 110.65167 * 155.53833 * 8 7 6 38 38 H 0.97000 * 120.00002 * 0.02562 * 14 12 11 39 39 H 1.09001 * 109.46710 * 300.00163 * 15 14 12 40 40 H 1.08997 * 109.46770 * 59.99928 * 15 14 12 41 41 H 0.97008 * 119.99480 * 359.97438 * 18 16 15 42 42 H 0.96990 * 120.00501 * 180.02562 * 22 21 19 43 43 H 1.08998 * 110.09226 * 150.06329 * 27 11 9 44 44 H 1.08998 * 110.09437 * 271.65800 * 27 11 9 45 45 H 1.09005 * 110.23327 * 241.06836 * 28 5 3 46 46 H 1.09001 * 110.22805 * 3.02061 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.1566 0.6080 1.2499 7 6 4.9301 1.7043 2.0098 8 6 5.2950 2.7411 0.9206 9 6 4.0502 2.7439 0.0002 10 1 3.2779 3.4354 0.3371 11 7 4.4932 3.0287 -1.3750 12 6 4.4604 4.2239 -1.9970 13 8 4.0327 5.2013 -1.4135 14 7 4.9025 4.3360 -3.2652 15 6 4.8672 5.6354 -3.9411 16 6 5.4125 5.4896 -5.3384 17 8 5.7935 4.4070 -5.7309 18 7 5.4777 6.5625 -6.1516 19 6 5.9742 6.4300 -7.4226 20 1 6.3134 5.4661 -7.7721 21 6 6.0410 7.5359 -8.2610 22 7 5.6287 8.7090 -7.8357 23 14 6.7181 7.3556 -9.9927 24 1 7.1124 5.9430 -10.2254 25 1 5.6753 7.7464 -10.9751 26 1 7.9045 8.2342 -10.1542 27 6 4.9796 1.7603 -1.9406 28 6 4.1547 0.6456 -1.2731 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 3.3570 0.2008 1.8687 33 1 4.8460 -0.1850 0.9603 34 1 5.8321 1.2962 2.4658 35 1 4.2892 2.1558 2.7671 36 1 6.1804 2.4241 0.3694 37 1 5.4483 3.7254 1.3629 38 1 5.2440 3.5564 -3.7304 39 1 3.8385 5.9925 -3.9882 40 1 5.4750 6.3500 -3.3862 41 1 5.1733 7.4283 -5.8375 42 1 5.6749 9.4809 -8.4211 43 1 4.8233 1.7470 -3.0193 44 1 6.0376 1.6301 -1.7134 45 1 4.7974 -0.1962 -1.0149 46 1 3.3542 0.3197 -1.9372 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001470092641.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:04 Heat of formation + Delta-G solvation = -170.663055 kcal Electronic energy + Delta-G solvation = -30092.805877 eV Core-core repulsion = 25788.495585 eV Total energy + Delta-G solvation = -4304.310291 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.56487 -41.21041 -40.30849 -39.44443 -37.56607 -36.27550 -35.76318 -35.14697 -33.38818 -32.98255 -29.93617 -29.60555 -28.24299 -28.10499 -26.31370 -24.02319 -23.64693 -22.04116 -21.44497 -21.23167 -20.41980 -20.10297 -19.61722 -18.25170 -17.97708 -17.57834 -17.40485 -17.12223 -16.92465 -16.59328 -16.14435 -15.98440 -15.66905 -15.30590 -15.27408 -15.04352 -14.52914 -14.37108 -14.23706 -14.01158 -13.70012 -13.68359 -13.55591 -13.35357 -12.99393 -12.92509 -12.89407 -12.45565 -12.36758 -12.15766 -12.11166 -12.04538 -11.92576 -11.87194 -11.59097 -11.56873 -11.39803 -11.24182 -10.58189 -10.37840 -10.11186 -9.63112 -8.51900 -6.02424 1.03308 1.32132 1.34494 1.43095 1.57124 1.63349 1.86539 2.00530 2.27047 2.78223 3.03864 3.15091 3.16064 3.34128 3.51293 3.84327 3.99906 4.04876 4.17157 4.24455 4.25245 4.26705 4.29814 4.36567 4.39861 4.40875 4.44865 4.59221 4.65460 4.67938 4.86069 4.98811 5.01378 5.06056 5.12655 5.17066 5.24922 5.25875 5.31395 5.37783 5.39942 5.90691 5.93651 6.46068 6.60101 6.85582 7.01927 7.37425 7.45229 7.91763 8.65387 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020430 B = 0.002264 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.232230 B =12366.632184 C =12708.794026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.349 6.349 3 C 0.473 3.527 4 O -0.541 6.541 5 C -0.064 4.064 6 C -0.097 4.097 7 C -0.116 4.116 8 C -0.127 4.127 9 C 0.158 3.842 10 H 0.075 0.925 11 N -0.632 5.632 12 C 0.722 3.278 13 O -0.631 6.631 14 N -0.720 5.720 15 C 0.141 3.859 16 C 0.436 3.564 17 O -0.622 6.622 18 N -0.559 5.559 19 C -0.335 4.335 20 H 0.088 0.912 21 C -0.012 4.012 22 N -0.917 5.917 23 Si 0.999 3.001 24 H -0.268 1.268 25 H -0.272 1.272 26 H -0.271 1.271 27 C 0.089 3.911 28 C -0.106 4.106 29 H 0.051 0.949 30 H 0.139 0.861 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.119 0.881 34 H 0.105 0.895 35 H 0.064 0.936 36 H 0.090 0.910 37 H 0.061 0.939 38 H 0.410 0.590 39 H 0.086 0.914 40 H 0.093 0.907 41 H 0.398 0.602 42 H 0.280 0.720 43 H 0.075 0.925 44 H 0.101 0.899 45 H 0.142 0.858 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.129 -21.381 19.808 29.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.265 6.265 3 C 0.317 3.683 4 O -0.430 6.430 5 C -0.067 4.067 6 C -0.134 4.134 7 C -0.154 4.154 8 C -0.166 4.166 9 C 0.053 3.947 10 H 0.093 0.907 11 N -0.368 5.368 12 C 0.423 3.577 13 O -0.512 6.512 14 N -0.378 5.378 15 C 0.012 3.988 16 C 0.223 3.777 17 O -0.510 6.510 18 N -0.194 5.194 19 C -0.465 4.465 20 H 0.106 0.894 21 C -0.213 4.213 22 N -0.557 5.557 23 Si 0.822 3.178 24 H -0.193 1.193 25 H -0.197 1.197 26 H -0.196 1.196 27 C -0.033 4.033 28 C -0.143 4.143 29 H 0.070 0.930 30 H 0.157 0.843 31 H 0.080 0.920 32 H 0.100 0.900 33 H 0.137 0.863 34 H 0.123 0.877 35 H 0.083 0.917 36 H 0.109 0.891 37 H 0.080 0.920 38 H 0.248 0.752 39 H 0.104 0.896 40 H 0.111 0.889 41 H 0.233 0.767 42 H 0.089 0.911 43 H 0.094 0.906 44 H 0.119 0.881 45 H 0.160 0.840 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.429 -20.810 19.777 28.913 hybrid contribution -0.504 1.017 -1.147 1.614 sum -3.934 -19.793 18.630 27.465 Atomic orbital electron populations 1.23570 0.74985 1.05928 1.02165 1.86484 1.24627 1.31870 1.83518 1.23845 0.92226 0.81303 0.70945 1.90716 1.67869 1.37890 1.46526 1.21739 0.86127 0.97099 1.01690 1.22263 1.00497 0.98592 0.92094 1.22328 1.01390 0.94923 0.96711 1.22822 0.96583 1.00481 0.96676 1.22359 0.97349 0.93657 0.81316 0.90674 1.47574 1.66703 1.07041 1.15468 1.15431 0.78612 0.82721 0.80893 1.90880 1.55359 1.37861 1.67117 1.44669 1.68326 1.12294 1.12560 1.20602 1.02298 0.85846 0.90051 1.20288 0.84740 0.84858 0.87849 1.90456 1.55618 1.27624 1.77267 1.41843 1.54973 1.09967 1.12625 1.19784 1.40201 0.96962 0.89505 0.89416 1.26170 0.96960 0.94030 1.04110 1.69691 1.46566 1.00386 1.39085 0.84787 0.78057 0.78574 0.76402 1.19262 1.19704 1.19572 1.22421 1.00280 0.81576 0.99006 1.22566 1.00332 0.98306 0.93139 0.92967 0.84311 0.91971 0.90042 0.86281 0.87684 0.91737 0.89121 0.92002 0.75155 0.89563 0.88926 0.76743 0.91057 0.90614 0.88078 0.84029 0.90619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 113.37 1.20 1.55 16 2 O -0.35 -6.08 10.51 -51.35 -0.54 -6.62 16 3 C 0.47 10.70 6.24 71.23 0.44 11.14 16 4 O -0.54 -17.22 15.29 21.94 0.34 -16.89 16 5 C -0.06 -1.10 0.92 -51.96 -0.05 -1.15 16 6 C -0.10 -0.90 6.10 31.17 0.19 -0.71 16 7 C -0.12 -1.21 6.83 31.59 0.22 -0.99 16 8 C -0.13 -2.22 6.37 31.81 0.20 -2.01 16 9 C 0.16 3.83 3.15 46.04 0.14 3.98 16 10 H 0.08 2.47 6.83 -2.39 -0.02 2.46 16 11 N -0.63 -17.48 2.91 -803.92 -2.34 -19.83 16 12 C 0.72 26.55 8.52 179.05 1.53 28.08 16 13 O -0.63 -28.07 16.60 -4.00 -0.07 -28.14 16 14 N -0.72 -26.30 5.49 -482.29 -2.65 -28.95 16 15 C 0.14 5.57 6.15 85.63 0.53 6.10 16 16 C 0.44 20.73 7.85 87.66 0.69 21.41 16 17 O -0.62 -32.48 15.24 -3.07 -0.05 -32.53 16 18 N -0.56 -28.69 5.29 -306.99 -1.62 -30.32 16 19 C -0.34 -18.65 9.68 84.04 0.81 -17.84 16 20 H 0.09 5.11 7.16 -2.91 -0.02 5.09 16 21 C -0.01 -0.64 5.50 84.92 0.47 -0.18 16 22 N -0.92 -49.42 13.05 21.66 0.28 -49.14 16 23 Si 1.00 42.00 29.55 68.60 2.03 44.03 16 24 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 25 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 26 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 27 C 0.09 1.64 6.24 86.56 0.54 2.18 16 28 C -0.11 -1.37 6.27 31.12 0.20 -1.18 16 29 H 0.05 0.83 8.13 -2.39 -0.02 0.81 16 30 H 0.14 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.06 0.86 8.13 -2.39 -0.02 0.84 16 32 H 0.08 0.72 7.69 -2.39 -0.02 0.70 16 33 H 0.12 0.37 7.10 -2.39 -0.02 0.36 16 34 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.09 1.37 7.28 -2.38 -0.02 1.35 16 37 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.41 14.30 5.84 -92.71 -0.54 13.76 16 39 H 0.09 3.37 8.14 -2.39 -0.02 3.35 16 40 H 0.09 3.51 8.14 -2.39 -0.02 3.49 16 41 H 0.40 19.80 7.90 -92.70 -0.73 19.07 16 42 H 0.28 14.05 8.31 -92.72 -0.77 13.28 16 43 H 0.08 1.51 7.03 -2.39 -0.02 1.49 16 44 H 0.10 1.37 7.71 -2.39 -0.02 1.35 16 45 H 0.14 0.66 7.11 -2.38 -0.02 0.65 16 46 H 0.08 1.10 7.73 -2.39 -0.02 1.08 16 Total: -1.00 -78.75 378.42 2.24 -76.51 By element: Atomic # 1 Polarization: 41.70 SS G_CDS: -0.24 Total: 41.46 kcal Atomic # 6 Polarization: 43.30 SS G_CDS: 7.10 Total: 50.40 kcal Atomic # 7 Polarization: -121.90 SS G_CDS: -6.33 Total: -128.23 kcal Atomic # 8 Polarization: -83.85 SS G_CDS: -0.32 Total: -84.17 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Total: -78.75 2.24 -76.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001470092641.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.156 kcal (2) G-P(sol) polarization free energy of solvation -78.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds