Wall clock time and date at job start Tue Mar 31 2020 22:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86800 * 120.00194 * 2 1 4 4 H 1.48500 * 109.47517 * 270.00723 * 3 2 1 5 5 H 1.48502 * 109.46736 * 30.00497 * 3 2 1 6 6 H 1.48496 * 109.47375 * 150.00192 * 3 2 1 7 7 C 1.38810 * 120.00054 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00204 * 359.97438 * 7 2 1 9 9 N 1.36939 * 120.00095 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99933 * 179.71972 * 9 7 2 11 11 C 1.53004 * 109.47198 * 180.27608 * 10 9 7 12 12 H 1.08996 * 110.88681 * 302.57294 * 11 10 9 13 13 C 1.55159 * 111.00328 * 66.45684 * 11 10 9 14 14 C 1.54324 * 102.94333 * 153.57938 * 13 11 10 15 15 N 1.47024 * 107.26681 * 337.80338 * 14 13 11 16 16 C 1.34776 * 125.64363 * 178.89761 * 15 14 13 17 17 O 1.21283 * 119.99935 * 180.02562 * 16 15 14 18 18 C 1.50703 * 120.00330 * 0.02562 * 16 15 14 19 19 C 1.50695 * 109.47421 * 180.02562 * 18 16 15 20 20 C 1.36256 * 120.26065 * 264.72007 * 19 18 16 21 21 C 1.39332 * 121.01988 * 179.76787 * 20 19 18 22 22 C 1.36204 * 121.08656 * 0.50796 * 21 20 19 23 23 C 1.40333 * 119.51506 * 359.75818 * 22 21 20 24 24 C 1.40442 * 122.08464 * 179.97438 * 23 22 21 25 25 N 1.31238 * 119.87889 * 180.02562 * 24 23 22 26 26 C 1.32610 * 122.78645 * 359.97438 * 25 24 23 27 27 C 1.36172 * 121.88214 * 359.97438 * 26 25 24 28 28 C 1.40188 * 120.26406 * 84.99562 * 19 18 16 29 29 C 1.47419 * 108.70634 * 358.94381 * 15 14 13 30 30 H 0.96998 * 120.00381 * 359.97438 * 1 2 3 31 31 H 0.97001 * 120.00218 * 0.02562 * 9 7 2 32 32 H 1.09009 * 109.47454 * 300.27377 * 10 9 7 33 33 H 1.08998 * 109.47492 * 60.27672 * 10 9 7 34 34 H 1.09004 * 110.71465 * 271.93928 * 13 11 10 35 35 H 1.08996 * 110.72622 * 35.20996 * 13 11 10 36 36 H 1.09003 * 109.88379 * 97.22077 * 14 13 11 37 37 H 1.08996 * 109.87998 * 218.22956 * 14 13 11 38 38 H 1.09011 * 109.46588 * 299.99852 * 18 16 15 39 39 H 1.08997 * 109.47150 * 59.99502 * 18 16 15 40 40 H 1.08003 * 119.48763 * 0.02562 * 20 19 18 41 41 H 1.07999 * 119.45784 * 180.28816 * 21 20 19 42 42 H 1.07996 * 120.24330 * 179.72960 * 22 21 20 43 43 H 1.08000 * 120.05898 * 359.97438 * 24 23 22 44 44 H 1.08001 * 119.06113 * 179.97438 * 26 25 24 45 45 H 1.08001 * 120.67016 * 179.97438 * 27 26 25 46 46 H 1.09005 * 110.36514 * 265.28744 * 29 15 14 47 47 H 1.08998 * 110.36722 * 142.96943 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1120 -2.4708 0.0046 11 6 5.6163 -2.1913 0.0096 12 1 5.9015 -1.5832 -0.8488 13 6 6.0523 -1.5178 1.3377 14 6 7.5337 -1.9312 1.4648 15 7 7.7204 -3.1417 0.6514 16 6 8.8824 -3.8033 0.4830 17 8 8.9200 -4.7950 -0.2141 18 6 10.1351 -3.3108 1.1608 19 6 11.2854 -4.2197 0.8122 20 6 11.6326 -5.2390 1.6472 21 6 12.6903 -6.0917 1.3382 22 6 13.4163 -5.9270 0.1977 23 6 13.0916 -4.8847 -0.6841 24 6 13.8041 -4.6653 -1.8743 25 7 13.4634 -3.6767 -2.6675 26 6 12.4581 -2.8546 -2.3992 27 6 11.7050 -2.9832 -1.2720 28 6 12.0105 -4.0198 -0.3708 29 6 6.4263 -3.5111 0.0497 30 1 -0.4850 0.8400 0.0004 31 1 3.8646 -0.3621 -0.0007 32 1 3.8454 -3.0405 0.8949 33 1 3.8521 -3.0445 -0.8851 34 1 5.9589 -0.4340 1.2692 35 1 5.4710 -1.9039 2.1750 36 1 8.1749 -1.1321 1.0928 37 1 7.7716 -2.1420 2.5074 38 1 10.3570 -2.2985 0.8228 39 1 9.9872 -3.3090 2.2407 40 1 11.0766 -5.3907 2.5606 41 1 12.9408 -6.8944 2.0160 42 1 14.2362 -6.5933 -0.0263 43 1 14.6313 -5.3083 -2.1360 44 1 12.2301 -2.0602 -3.0945 45 1 10.8908 -2.3022 -1.0727 46 1 5.9173 -4.2500 0.6688 47 1 6.5733 -3.8969 -0.9591 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480652787.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:11 Heat of formation + Delta-G solvation = 12.014742 kcal Electronic energy + Delta-G solvation = -28188.751123 eV Core-core repulsion = 24335.504350 eV Total energy + Delta-G solvation = -3853.246773 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.99663 -41.00622 -39.06456 -38.21059 -36.57814 -34.87916 -34.01882 -32.51252 -32.17353 -31.42202 -30.39854 -28.91307 -26.94294 -25.16535 -24.56790 -24.30542 -23.83337 -22.24073 -21.49257 -20.16752 -19.64919 -18.98375 -18.21410 -18.05149 -17.72114 -17.38451 -16.59626 -16.28469 -16.07249 -15.70997 -15.44707 -15.31359 -15.09471 -14.90885 -14.86729 -14.70878 -14.32204 -14.14308 -14.03349 -13.74814 -13.58210 -13.32310 -13.09186 -13.00438 -12.92750 -12.80788 -12.59203 -12.13966 -12.07492 -11.93220 -11.83988 -11.75254 -11.61763 -11.20482 -10.97302 -10.91343 -10.48993 -10.01129 -9.69661 -9.30402 -8.97785 -8.02046 -5.36584 -0.60839 -0.05336 0.91387 1.38255 1.44010 1.51225 1.56835 1.89312 2.16902 2.49854 3.08429 3.27922 3.32600 3.40611 3.51930 3.61891 3.69355 3.72034 3.83892 3.89925 3.94427 4.04941 4.12282 4.22667 4.30317 4.33594 4.37328 4.40897 4.48033 4.51309 4.61157 4.72761 4.80015 4.81978 4.83035 4.84683 4.99037 5.05957 5.08922 5.12123 5.18609 5.23457 5.38896 5.45110 5.50796 5.67081 5.75649 5.92093 6.21099 6.48821 6.98543 7.08230 7.09694 7.82759 8.04057 9.19430 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021807 B = 0.002111 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.676071 B =13261.554357 C =13812.970436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.068 4.068 3 Si 0.959 3.041 4 H -0.281 1.281 5 H -0.297 1.297 6 H -0.240 1.240 7 C -0.237 4.237 8 H 0.053 0.947 9 N -0.753 5.753 10 C 0.166 3.834 11 C -0.100 4.100 12 H 0.086 0.914 13 C -0.123 4.123 14 C 0.101 3.899 15 N -0.617 5.617 16 C 0.526 3.474 17 O -0.581 6.581 18 C -0.091 4.091 19 C -0.079 4.079 20 C -0.091 4.091 21 C -0.122 4.122 22 C -0.089 4.089 23 C -0.132 4.132 24 C 0.142 3.858 25 N -0.518 5.518 26 C 0.060 3.940 27 C -0.162 4.162 28 C -0.030 4.030 29 C 0.118 3.882 30 H 0.258 0.742 31 H 0.369 0.631 32 H 0.029 0.971 33 H 0.020 0.980 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.122 0.878 39 H 0.137 0.863 40 H 0.145 0.855 41 H 0.156 0.844 42 H 0.163 0.837 43 H 0.192 0.808 44 H 0.165 0.835 45 H 0.142 0.858 46 H 0.069 0.931 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.852 -7.684 6.338 35.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.259 4.259 3 Si 0.785 3.215 4 H -0.208 1.208 5 H -0.224 1.224 6 H -0.164 1.164 7 C -0.368 4.368 8 H 0.071 0.929 9 N -0.399 5.399 10 C 0.040 3.960 11 C -0.120 4.120 12 H 0.104 0.896 13 C -0.161 4.161 14 C -0.020 4.020 15 N -0.350 5.350 16 C 0.317 3.683 17 O -0.461 6.461 18 C -0.130 4.130 19 C -0.080 4.080 20 C -0.110 4.110 21 C -0.139 4.139 22 C -0.108 4.108 23 C -0.134 4.134 24 C -0.029 4.029 25 N -0.226 5.226 26 C -0.082 4.082 27 C -0.182 4.182 28 C -0.035 4.035 29 C -0.005 4.005 30 H 0.067 0.933 31 H 0.202 0.798 32 H 0.047 0.953 33 H 0.038 0.962 34 H 0.106 0.894 35 H 0.096 0.904 36 H 0.111 0.889 37 H 0.115 0.885 38 H 0.140 0.860 39 H 0.154 0.846 40 H 0.163 0.837 41 H 0.174 0.826 42 H 0.181 0.819 43 H 0.209 0.791 44 H 0.182 0.818 45 H 0.159 0.841 46 H 0.088 0.912 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 34.126 -8.078 5.162 35.447 hybrid contribution -1.210 0.816 0.343 1.499 sum 32.916 -7.262 5.506 34.154 Atomic orbital electron populations 1.69898 1.07350 1.26785 1.59557 1.25595 0.96190 1.01625 1.02479 0.85357 0.79051 0.79017 0.78058 1.20758 1.22406 1.16373 1.19012 0.82798 0.93404 1.41558 0.92936 1.42576 1.02294 1.04036 1.90990 1.20620 0.89459 0.87592 0.98342 1.22403 0.93574 0.96347 0.99667 0.89596 1.22678 0.94831 1.01789 0.96827 1.22301 0.97022 0.86273 0.96445 1.48609 1.07907 1.29135 1.49386 1.20718 0.84127 0.82621 0.80875 1.90727 1.85930 1.27900 1.41544 1.20698 0.88136 1.00379 1.03836 1.19241 0.96254 0.98245 0.94230 1.21237 0.96776 0.93090 0.99862 1.21276 0.95073 0.99764 0.97835 1.21357 1.00229 0.95973 0.93239 1.19317 0.97626 0.98263 0.98205 1.23722 0.97427 0.93411 0.88350 1.67439 1.16593 1.05408 1.33166 1.22438 0.91474 0.98027 0.96285 1.22025 1.01276 0.99096 0.95795 1.18259 0.95090 0.95197 0.94943 1.22035 0.83293 0.96591 0.98587 0.93343 0.79760 0.95255 0.96170 0.89372 0.90447 0.88926 0.88495 0.85960 0.84554 0.83715 0.82623 0.81926 0.79140 0.81801 0.84074 0.91227 0.91798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -62.84 13.97 21.65 0.30 -62.54 16 2 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 3 Si 0.96 43.73 27.73 68.60 1.90 45.64 16 4 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 5 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 6 H -0.24 -9.34 6.52 99.48 0.65 -8.69 16 7 C -0.24 -13.32 10.47 84.03 0.88 -12.44 16 8 H 0.05 3.28 8.06 -2.91 -0.02 3.25 16 9 N -0.75 -33.45 5.26 -343.44 -1.81 -35.26 16 10 C 0.17 5.95 5.71 86.38 0.49 6.44 16 11 C -0.10 -2.61 3.10 -9.40 -0.03 -2.64 16 12 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 13 C -0.12 -2.54 6.13 31.78 0.19 -2.34 16 14 C 0.10 1.45 6.49 86.73 0.56 2.01 16 15 N -0.62 -12.72 3.33 -811.80 -2.70 -15.42 16 16 C 0.53 11.79 7.84 87.66 0.69 12.48 16 17 O -0.58 -18.68 16.29 -3.04 -0.05 -18.73 16 18 C -0.09 -1.28 4.47 29.10 0.13 -1.15 16 19 C -0.08 -1.41 4.38 -19.85 -0.09 -1.50 16 20 C -0.09 -1.32 9.58 22.07 0.21 -1.11 16 21 C -0.12 -1.48 9.94 22.06 0.22 -1.26 16 22 C -0.09 -1.14 9.81 22.31 0.22 -0.92 16 23 C -0.13 -2.44 5.74 -21.31 -0.12 -2.56 16 24 C 0.14 2.52 11.05 85.32 0.94 3.46 16 25 N -0.52 -11.41 10.30 -195.52 -2.01 -13.42 16 26 C 0.06 1.24 11.07 84.09 0.93 2.17 16 27 C -0.16 -3.29 9.36 22.39 0.21 -3.08 16 28 C -0.03 -0.62 5.75 -21.28 -0.12 -0.74 16 29 C 0.12 2.95 6.38 86.86 0.55 3.51 16 30 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 31 H 0.37 15.16 5.40 -92.71 -0.50 14.66 16 32 H 0.03 1.07 8.11 -2.38 -0.02 1.05 16 33 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.08 1.71 8.01 -2.39 -0.02 1.69 16 36 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.12 1.24 6.79 -2.38 -0.02 1.23 16 39 H 0.14 1.05 8.04 -2.39 -0.02 1.03 16 40 H 0.15 1.44 8.05 -2.91 -0.02 1.42 16 41 H 0.16 0.94 8.06 -2.91 -0.02 0.91 16 42 H 0.16 0.96 8.06 -2.91 -0.02 0.94 16 43 H 0.19 1.92 8.06 -2.91 -0.02 1.89 16 44 H 0.16 2.68 8.06 -2.91 -0.02 2.66 16 45 H 0.14 2.40 6.65 -2.91 -0.02 2.38 16 46 H 0.07 1.76 8.04 -2.38 -0.02 1.75 16 47 H 0.06 1.78 8.04 -2.39 -0.02 1.76 16 Total: -1.00 -80.98 386.79 2.40 -78.59 By element: Atomic # 1 Polarization: 23.85 SS G_CDS: 0.42 Total: 24.27 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: 6.34 Total: -3.12 kcal Atomic # 7 Polarization: -120.42 SS G_CDS: -6.22 Total: -126.64 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: -0.05 Total: -18.73 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 1.90 Total: 45.64 kcal Total: -80.98 2.40 -78.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480652787.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.601 kcal (2) G-P(sol) polarization free energy of solvation -80.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds