Wall clock time and date at job start Tue Mar 31 2020 22:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 120.00290 * 2 1 4 4 H 1.48493 * 109.47194 * 240.00217 * 3 2 1 5 5 H 1.48503 * 109.46900 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46802 * 120.00201 * 3 2 1 7 7 C 1.38815 * 120.00078 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00398 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99691 * 359.97438 * 7 2 1 10 10 C 1.46502 * 120.00204 * 180.02562 * 9 7 2 11 11 C 1.52993 * 109.47415 * 179.97438 * 10 9 7 12 12 H 1.09003 * 110.54006 * 307.61008 * 11 10 9 13 13 C 1.54899 * 110.48570 * 70.22254 * 11 10 9 14 14 C 1.54893 * 102.74826 * 156.62204 * 13 11 10 15 15 C 1.54274 * 104.19298 * 322.05878 * 14 13 11 16 16 C 1.53873 * 106.60026 * 23.61116 * 15 14 13 17 17 H 1.08997 * 110.03300 * 119.33808 * 16 15 14 18 18 N 1.46505 * 110.03064 * 240.71602 * 16 15 14 19 19 C 1.34777 * 119.99724 * 273.54891 * 18 16 15 20 20 O 1.21563 * 120.00284 * 359.97438 * 19 18 16 21 21 C 1.47768 * 119.99642 * 179.72314 * 19 18 16 22 22 C 1.40630 * 119.80606 * 0.02562 * 21 19 18 23 23 C 1.35699 * 120.92166 * 179.77306 * 22 21 19 24 24 C 1.40754 * 120.11121 * 0.47648 * 23 22 21 25 25 N 1.33655 * 120.83152 * 179.83258 * 24 23 22 26 26 C 1.31118 * 121.39318 * 179.97438 * 25 24 23 27 27 C 1.39311 * 121.77128 * 359.97438 * 26 25 24 28 28 C 1.36580 * 119.90538 * 0.09166 * 27 26 25 29 29 C 1.40894 * 118.15955 * 359.86426 * 28 27 26 30 30 C 1.38552 * 119.80249 * 180.26944 * 21 19 18 31 31 H 0.97001 * 119.99666 * 359.97438 * 1 2 3 32 32 H 0.97007 * 120.00049 * 359.97438 * 9 7 2 33 33 H 1.08999 * 109.46914 * 59.99364 * 10 9 7 34 34 H 1.09002 * 109.46623 * 299.99767 * 10 9 7 35 35 H 1.08989 * 110.75470 * 38.30643 * 13 11 10 36 36 H 1.08995 * 110.90922 * 275.00752 * 13 11 10 37 37 H 1.08995 * 110.48693 * 203.37819 * 14 13 11 38 38 H 1.09000 * 110.48458 * 80.73236 * 14 13 11 39 39 H 1.09007 * 110.02856 * 264.32180 * 15 14 13 40 40 H 1.08995 * 110.03008 * 142.89946 * 15 14 13 41 41 H 0.97000 * 119.99792 * 93.54459 * 18 16 15 42 42 H 1.08008 * 119.53663 * 0.02562 * 22 21 19 43 43 H 1.08004 * 119.94185 * 180.25748 * 23 22 21 44 44 H 1.08002 * 119.10806 * 180.02562 * 26 25 24 45 45 H 1.08001 * 120.04426 * 180.02562 * 27 26 25 46 46 H 1.08003 * 120.92162 * 179.97438 * 28 27 26 47 47 H 1.07994 * 120.30004 * 359.96507 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1041 1.6962 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6569 -0.0005 11 6 1.0637 -4.8197 0.0001 12 1 0.3420 -4.7054 0.8090 13 6 0.3377 -4.9130 -1.3650 14 6 -0.1130 -6.3941 -1.4120 15 6 1.0589 -7.1666 -0.7718 16 6 1.8070 -6.1656 0.1260 17 1 1.7899 -6.5070 1.1610 18 7 3.1913 -6.0189 -0.3308 19 6 4.1394 -6.8705 0.1079 20 8 3.8461 -7.7599 0.8829 21 6 5.5344 -6.7264 -0.3577 22 6 5.8682 -5.6989 -1.2580 23 6 7.1429 -5.5430 -1.6967 24 6 8.1524 -6.4212 -1.2598 25 7 9.4119 -6.2829 -1.6852 26 6 10.3609 -7.0943 -1.2850 27 6 10.1076 -8.1387 -0.3985 28 6 8.8421 -8.3382 0.0749 29 6 7.8252 -7.4637 -0.3566 30 6 6.5048 -7.6074 0.0915 31 1 -0.4850 0.8401 0.0004 32 1 0.3554 -2.3880 0.0002 33 1 2.6846 -3.7146 0.8894 34 1 2.6845 -3.7146 -0.8906 35 1 1.0232 -4.6917 -2.1829 36 1 -0.5238 -4.2460 -1.3938 37 1 -0.2634 -6.7146 -2.4428 38 1 -1.0247 -6.5340 -0.8311 39 1 1.7258 -7.5434 -1.5474 40 1 0.6780 -7.9934 -0.1724 41 1 3.4253 -5.3091 -0.9491 42 1 5.1001 -5.0220 -1.6021 43 1 7.3824 -4.7459 -2.3849 44 1 11.3662 -6.9484 -1.6519 45 1 10.9106 -8.7902 -0.0869 46 1 8.6273 -9.1430 0.7624 47 1 6.2461 -8.3980 0.7803 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482687015.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:28 Heat of formation + Delta-G solvation = 5.013663 kcal Electronic energy + Delta-G solvation = -28486.242292 eV Core-core repulsion = 24632.691929 eV Total energy + Delta-G solvation = -3853.550363 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.00241 -41.13206 -39.31850 -37.68964 -36.26005 -34.80502 -34.42969 -33.32078 -31.80164 -31.11997 -30.20358 -28.76771 -26.40330 -25.67531 -24.88801 -24.06972 -23.22100 -22.36001 -21.42247 -20.57406 -19.69897 -19.15191 -18.74728 -17.91634 -17.18764 -16.86291 -16.63912 -16.22770 -16.00769 -15.70602 -15.47215 -15.38058 -15.16421 -15.11348 -14.97249 -14.74668 -14.49202 -14.43847 -13.99884 -13.60012 -13.16472 -13.09065 -12.85565 -12.75946 -12.60199 -12.50794 -12.28518 -12.22219 -11.97559 -11.82193 -11.65356 -11.62223 -11.55822 -11.46324 -11.09403 -10.90337 -10.52378 -10.17609 -9.83943 -9.36343 -8.99190 -7.94504 -5.22888 -0.82599 -0.37108 0.85677 1.37231 1.47755 1.50100 1.56103 2.07837 2.26741 2.56031 3.06111 3.24144 3.37966 3.43797 3.52886 3.61693 3.67927 3.72463 3.86668 3.94671 3.99026 4.03362 4.18403 4.25427 4.38980 4.50053 4.51056 4.54787 4.56254 4.67378 4.74331 4.78201 4.84404 4.86251 4.94617 4.99788 5.02383 5.10886 5.16599 5.22348 5.24704 5.25262 5.36176 5.45358 5.47159 5.51655 5.55540 5.73549 6.27382 6.44611 6.87607 7.10025 7.34629 8.09957 8.33558 9.28687 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009708 B = 0.002978 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2883.488433 B = 9400.683213 C =11741.020121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.073 4.073 3 Si 0.970 3.030 4 H -0.276 1.276 5 H -0.296 1.296 6 H -0.281 1.281 7 C -0.245 4.245 8 H 0.075 0.925 9 N -0.740 5.740 10 C 0.166 3.834 11 C -0.100 4.100 12 H 0.081 0.919 13 C -0.111 4.111 14 C -0.114 4.114 15 C -0.123 4.123 16 C 0.153 3.847 17 H 0.079 0.921 18 N -0.707 5.707 19 C 0.559 3.441 20 O -0.573 6.573 21 C -0.149 4.149 22 C -0.075 4.075 23 C -0.106 4.106 24 C 0.124 3.876 25 N -0.511 5.511 26 C 0.139 3.861 27 C -0.171 4.171 28 C -0.051 4.051 29 C -0.130 4.130 30 C -0.023 4.023 31 H 0.251 0.749 32 H 0.375 0.625 33 H 0.010 0.990 34 H 0.028 0.972 35 H 0.065 0.935 36 H 0.057 0.943 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.408 0.592 42 H 0.144 0.856 43 H 0.148 0.852 44 H 0.192 0.808 45 H 0.179 0.821 46 H 0.169 0.831 47 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.837 -21.199 -3.686 27.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.265 4.265 3 Si 0.799 3.201 4 H -0.202 1.202 5 H -0.222 1.222 6 H -0.207 1.207 7 C -0.377 4.377 8 H 0.093 0.907 9 N -0.383 5.383 10 C 0.039 3.961 11 C -0.119 4.119 12 H 0.099 0.901 13 C -0.148 4.148 14 C -0.152 4.152 15 C -0.162 4.162 16 C 0.048 3.952 17 H 0.097 0.903 18 N -0.359 5.359 19 C 0.348 3.652 20 O -0.454 6.454 21 C -0.152 4.152 22 C -0.095 4.095 23 C -0.124 4.124 24 C 0.003 3.997 25 N -0.220 5.220 26 C -0.033 4.033 27 C -0.190 4.190 28 C -0.077 4.077 29 C -0.132 4.132 30 C -0.043 4.043 31 H 0.060 0.940 32 H 0.207 0.793 33 H 0.028 0.972 34 H 0.046 0.954 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.248 0.752 42 H 0.162 0.838 43 H 0.166 0.834 44 H 0.209 0.791 45 H 0.196 0.804 46 H 0.186 0.814 47 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 16.835 -20.975 -3.743 27.154 hybrid contribution -0.350 1.043 0.459 1.192 sum 16.485 -19.932 -3.284 26.074 Atomic orbital electron populations 1.69798 1.06523 1.26104 1.59377 1.25517 0.96348 1.00944 1.03698 0.85268 0.77256 0.79409 0.78172 1.20181 1.22211 1.20724 1.19572 0.91461 0.85361 1.41331 0.90732 1.42506 1.05644 1.00884 1.89244 1.20693 0.93582 0.84651 0.97184 1.22359 0.97372 0.92629 0.99570 0.90113 1.22455 0.99737 0.97010 0.95628 1.22333 0.97766 0.93526 1.01527 1.22510 0.97316 0.97609 0.98743 1.21570 0.79915 0.94818 0.98879 0.90309 1.46172 1.08448 1.33156 1.48146 1.18408 0.85443 0.81230 0.80122 1.90727 1.82955 1.34934 1.36753 1.19915 0.93290 0.99719 1.02257 1.21062 0.97282 0.96205 0.94975 1.20856 0.91174 0.99452 1.00959 1.19242 0.92050 0.94120 0.94261 1.68122 1.00270 1.28312 1.25299 1.23759 0.99232 0.88936 0.91383 1.22339 0.98408 0.99856 0.98405 1.21962 0.92066 0.96919 0.96719 1.19001 0.95216 0.98610 1.00402 1.21558 0.90418 0.96731 0.95614 0.94014 0.79265 0.97209 0.95409 0.91632 0.92375 0.90171 0.90752 0.91195 0.90569 0.75234 0.83848 0.83378 0.79083 0.80361 0.81397 0.83193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.69 13.06 21.65 0.28 -58.41 16 2 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 3 Si 0.97 45.89 29.55 68.60 2.03 47.92 16 4 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 5 H -0.30 -14.12 7.11 99.48 0.71 -13.42 16 6 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 7 C -0.25 -13.51 9.99 84.03 0.84 -12.67 16 8 H 0.07 3.94 7.83 -2.91 -0.02 3.91 16 9 N -0.74 -36.64 5.49 -343.46 -1.89 -38.52 16 10 C 0.17 6.31 4.72 86.38 0.41 6.72 16 11 C -0.10 -3.09 2.85 -9.72 -0.03 -3.11 16 12 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 13 C -0.11 -3.11 6.19 31.89 0.20 -2.91 16 14 C -0.11 -2.48 6.83 31.67 0.22 -2.27 16 15 C -0.12 -2.81 6.59 31.32 0.21 -2.61 16 16 C 0.15 4.16 3.10 45.71 0.14 4.30 16 17 H 0.08 2.34 7.60 -2.39 -0.02 2.32 16 18 N -0.71 -18.59 4.33 -442.04 -1.91 -20.50 16 19 C 0.56 15.77 7.76 86.76 0.67 16.45 16 20 O -0.57 -19.14 15.98 -3.91 -0.06 -19.20 16 21 C -0.15 -3.66 5.87 -20.10 -0.12 -3.78 16 22 C -0.08 -1.68 9.44 22.27 0.21 -1.47 16 23 C -0.11 -2.39 9.95 22.30 0.22 -2.16 16 24 C 0.12 2.86 6.61 40.35 0.27 3.13 16 25 N -0.51 -10.93 10.33 -188.45 -1.95 -12.88 16 26 C 0.14 1.86 11.15 85.06 0.95 2.81 16 27 C -0.17 -1.67 10.03 22.14 0.22 -1.45 16 28 C -0.05 -0.68 9.89 22.53 0.22 -0.45 16 29 C -0.13 -2.65 5.74 -21.29 -0.12 -2.77 16 30 C -0.02 -0.52 9.35 22.82 0.21 -0.31 16 31 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 32 H 0.38 19.79 7.64 -92.70 -0.71 19.08 16 33 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 34 H 0.03 1.00 6.40 -2.39 -0.02 0.98 16 35 H 0.06 1.85 7.97 -2.39 -0.02 1.83 16 36 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.07 1.58 7.92 -2.38 -0.02 1.56 16 40 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.41 9.99 4.48 -92.71 -0.42 9.57 16 42 H 0.14 2.81 6.35 -2.91 -0.02 2.79 16 43 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16 44 H 0.19 1.15 8.06 -2.91 -0.02 1.13 16 45 H 0.18 0.33 8.06 -2.91 -0.02 0.30 16 46 H 0.17 1.24 8.06 -2.91 -0.02 1.22 16 47 H 0.15 3.05 7.62 -2.91 -0.02 3.02 16 Total: -1.00 -72.59 384.78 1.57 -71.03 By element: Atomic # 1 Polarization: 36.91 SS G_CDS: -0.12 Total: 36.80 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: 5.19 Total: -6.23 kcal Atomic # 7 Polarization: -124.84 SS G_CDS: -5.46 Total: -130.31 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -0.06 Total: -19.20 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -72.59 1.57 -71.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482687015.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.039 kcal (2) G-P(sol) polarization free energy of solvation -72.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds