Wall clock time and date at job start Tue Mar 31 2020 22:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99559 * 2 1 4 4 H 1.48500 * 109.46951 * 269.99854 * 3 2 1 5 5 H 1.48500 * 109.47313 * 30.00170 * 3 2 1 6 6 H 1.48501 * 109.46991 * 150.00211 * 3 2 1 7 7 C 1.38801 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00073 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00093 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99992 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47212 * 179.97438 * 10 9 7 12 12 H 1.09007 * 110.43783 * 307.54183 * 11 10 9 13 13 C 1.54890 * 110.48670 * 70.22087 * 11 10 9 14 14 C 1.54888 * 102.74996 * 156.61991 * 13 11 10 15 15 C 1.54270 * 104.19756 * 322.06245 * 14 13 11 16 16 C 1.53874 * 106.59709 * 23.60720 * 15 14 13 17 17 H 1.08998 * 110.07122 * 240.69625 * 16 15 14 18 18 N 1.46499 * 110.03422 * 119.28333 * 16 15 14 19 19 C 1.34780 * 119.99469 * 87.83420 * 18 16 15 20 20 O 1.21558 * 120.00138 * 359.97438 * 19 18 16 21 21 C 1.47771 * 119.99804 * 180.02562 * 19 18 16 22 22 C 1.40632 * 119.80157 * 359.72077 * 21 19 18 23 23 C 1.35701 * 120.91883 * 179.73426 * 22 21 19 24 24 C 1.40766 * 120.11000 * 0.56370 * 23 22 21 25 25 N 1.33647 * 120.82478 * 179.67151 * 24 23 22 26 26 C 1.31122 * 121.38861 * 180.02562 * 25 24 23 27 27 C 1.39311 * 121.77279 * 0.02562 * 26 25 24 28 28 C 1.36585 * 119.90090 * 359.97373 * 27 26 25 29 29 C 1.40886 * 118.15980 * 0.04169 * 28 27 26 30 30 C 1.38548 * 119.80569 * 180.02562 * 21 19 18 31 31 H 0.97001 * 120.00803 * 359.97438 * 1 2 3 32 32 H 0.96996 * 120.00401 * 359.97438 * 9 7 2 33 33 H 1.09002 * 109.47068 * 299.99856 * 10 9 7 34 34 H 1.09001 * 109.47372 * 59.99943 * 10 9 7 35 35 H 1.08998 * 110.75888 * 274.94005 * 13 11 10 36 36 H 1.09004 * 110.75395 * 38.30810 * 13 11 10 37 37 H 1.08998 * 110.49376 * 203.38070 * 14 13 11 38 38 H 1.09001 * 110.59695 * 80.79264 * 14 13 11 39 39 H 1.09001 * 110.03076 * 264.32096 * 15 14 13 40 40 H 1.09001 * 110.07650 * 142.91446 * 15 14 13 41 41 H 0.96991 * 120.00494 * 267.83457 * 18 16 15 42 42 H 1.07996 * 119.54229 * 0.02562 * 22 21 19 43 43 H 1.07997 * 119.94582 * 180.26512 * 23 22 21 44 44 H 1.08005 * 119.11659 * 180.02562 * 26 25 24 45 45 H 1.08003 * 120.05194 * 179.97438 * 27 26 25 46 46 H 1.08006 * 120.91780 * 180.02562 * 28 27 26 47 47 H 1.08000 * 120.29735 * 359.97438 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0582 -3.6567 -0.0016 11 6 1.0640 -4.8197 -0.0022 12 1 0.3433 -4.7047 0.8074 13 6 0.3391 -4.9124 -1.3679 14 6 -0.1114 -6.3935 -1.4159 15 6 1.0600 -7.1663 -0.7751 16 6 1.8074 -6.1656 0.1237 17 1 2.8377 -6.0560 -0.2146 18 7 1.7822 -6.6244 1.5147 19 6 2.7414 -7.4561 1.9673 20 8 3.6271 -7.8257 1.2212 21 6 2.7158 -7.9195 3.3703 22 6 1.6920 -7.4854 4.2311 23 6 1.6435 -7.9009 5.5220 24 6 2.6322 -8.7691 6.0220 25 7 2.6020 -9.1821 7.2927 26 6 3.5176 -9.9903 7.7702 27 6 4.5659 -10.4587 6.9813 28 6 4.6574 -10.0763 5.6733 29 6 3.6721 -9.2075 5.1641 30 6 3.7041 -8.7739 3.8315 31 1 -0.4851 0.8400 0.0004 32 1 0.3556 -2.3881 -0.0016 33 1 2.6855 -3.7140 -0.8911 34 1 2.6842 -3.7148 0.8888 35 1 -0.5226 -4.2454 -1.3939 36 1 1.0253 -4.6907 -2.1853 37 1 -0.2609 -6.7137 -2.4470 38 1 -1.0240 -6.5357 -0.8371 39 1 1.7275 -7.5426 -1.5504 40 1 0.6794 -7.9938 -0.1765 41 1 1.0754 -6.3298 2.1099 42 1 0.9310 -6.8158 3.8584 43 1 0.8477 -7.5611 6.1682 44 1 3.4573 -10.3012 8.8027 45 1 5.3052 -11.1234 7.4034 46 1 5.4631 -10.4298 5.0468 47 1 4.4922 -9.1027 3.1703 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482687017.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:37 Heat of formation + Delta-G solvation = -1.297379 kcal Electronic energy + Delta-G solvation = -28038.054396 eV Core-core repulsion = 24184.230366 eV Total energy + Delta-G solvation = -3853.824030 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.98260 -41.04353 -39.31135 -37.68922 -36.34044 -34.88593 -34.45514 -33.30567 -31.81302 -31.11803 -30.21644 -28.72711 -26.45291 -25.63916 -24.88085 -23.91173 -23.16824 -22.40096 -21.35526 -21.02609 -19.51983 -19.08479 -18.68556 -18.05329 -17.38448 -16.88998 -16.62004 -16.28855 -15.80374 -15.73371 -15.51518 -15.30451 -15.14259 -15.07488 -15.00182 -14.67172 -14.50088 -14.39081 -14.00405 -13.49323 -13.18687 -13.10876 -12.94571 -12.83439 -12.65609 -12.51018 -12.44067 -12.18406 -11.96526 -11.87273 -11.63452 -11.62228 -11.59250 -11.42638 -11.10334 -10.93505 -10.53099 -10.17709 -9.83742 -9.36079 -9.00538 -7.96288 -5.24586 -0.83011 -0.36632 0.85214 1.37435 1.46335 1.47573 1.56065 2.06065 2.26611 2.54689 3.06115 3.24999 3.36585 3.43864 3.53106 3.60138 3.67496 3.72649 3.89731 3.94947 3.99052 4.03364 4.15474 4.26917 4.40540 4.47402 4.50525 4.54553 4.58793 4.65404 4.73140 4.75578 4.85938 4.93622 4.98809 4.99932 5.01604 5.09575 5.16310 5.18294 5.24180 5.25260 5.33445 5.46076 5.46466 5.50689 5.58782 5.73535 6.26228 6.45807 6.86918 7.11380 7.33286 8.07779 8.33588 9.26827 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012102 B = 0.002372 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.152004 B =11801.211512 C =13176.366661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.071 4.071 3 Si 0.971 3.029 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.273 1.273 7 C -0.247 4.247 8 H 0.069 0.931 9 N -0.738 5.738 10 C 0.162 3.838 11 C -0.091 4.091 12 H 0.085 0.915 13 C -0.111 4.111 14 C -0.112 4.112 15 C -0.123 4.123 16 C 0.153 3.847 17 H 0.073 0.927 18 N -0.705 5.705 19 C 0.558 3.442 20 O -0.575 6.575 21 C -0.148 4.148 22 C -0.073 4.073 23 C -0.105 4.105 24 C 0.123 3.877 25 N -0.510 5.510 26 C 0.139 3.861 27 C -0.171 4.171 28 C -0.053 4.053 29 C -0.131 4.131 30 C -0.027 4.027 31 H 0.252 0.748 32 H 0.377 0.623 33 H 0.015 0.985 34 H 0.009 0.991 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.411 0.589 42 H 0.153 0.847 43 H 0.152 0.848 44 H 0.193 0.807 45 H 0.178 0.822 46 H 0.166 0.834 47 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.414 -26.102 12.178 29.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.264 4.264 3 Si 0.800 3.200 4 H -0.213 1.213 5 H -0.219 1.219 6 H -0.198 1.198 7 C -0.379 4.379 8 H 0.087 0.913 9 N -0.381 5.381 10 C 0.035 3.965 11 C -0.111 4.111 12 H 0.104 0.896 13 C -0.149 4.149 14 C -0.149 4.149 15 C -0.162 4.162 16 C 0.047 3.953 17 H 0.091 0.909 18 N -0.356 5.356 19 C 0.347 3.653 20 O -0.456 6.456 21 C -0.151 4.151 22 C -0.093 4.093 23 C -0.124 4.124 24 C 0.002 3.998 25 N -0.219 5.219 26 C -0.033 4.033 27 C -0.191 4.191 28 C -0.079 4.079 29 C -0.133 4.133 30 C -0.047 4.047 31 H 0.061 0.939 32 H 0.210 0.790 33 H 0.033 0.967 34 H 0.027 0.973 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.093 0.907 41 H 0.249 0.751 42 H 0.171 0.829 43 H 0.170 0.830 44 H 0.209 0.791 45 H 0.195 0.805 46 H 0.184 0.816 47 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 4.445 -25.878 12.099 28.911 hybrid contribution 0.462 1.224 -0.396 1.367 sum 4.907 -24.654 11.703 27.728 Atomic orbital electron populations 1.69792 1.06381 1.26108 1.59309 1.25506 0.96433 1.00861 1.03597 0.85185 0.77673 0.79694 0.77475 1.21345 1.21887 1.19829 1.19573 0.91303 0.85555 1.41474 0.91312 1.42459 1.05631 1.00752 1.89293 1.20775 0.93661 0.85096 0.96949 1.22286 0.97024 0.92132 0.99617 0.89626 1.22405 0.99652 0.97298 0.95500 1.22319 0.97738 0.93224 1.01630 1.22479 0.97485 0.97568 0.98676 1.21558 1.00122 0.92679 0.80898 0.90853 1.46024 1.28818 1.47691 1.13055 1.18457 0.81128 0.78393 0.87320 1.90742 1.37453 1.58595 1.58814 1.19912 0.99160 1.02638 0.93399 1.21109 0.97071 0.98103 0.93022 1.20888 0.98744 0.97040 0.95680 1.19286 0.94300 0.96201 0.89973 1.68128 1.27643 1.13196 1.12886 1.23750 0.88326 0.89499 1.01723 1.22334 1.00557 1.01962 0.94211 1.21957 0.96471 0.92640 0.96787 1.18990 0.98231 1.01391 0.94653 1.21556 0.96541 0.92629 0.93940 0.93903 0.79047 0.96690 0.97309 0.91956 0.92125 0.90234 0.90389 0.91161 0.90672 0.75098 0.82933 0.82999 0.79070 0.80486 0.81643 0.83588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.69 13.06 21.65 0.28 -58.41 16 2 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 3 Si 0.97 46.57 29.55 68.60 2.03 48.60 16 4 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 5 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 6 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 7 C -0.25 -14.04 9.99 84.03 0.84 -13.20 16 8 H 0.07 3.83 7.83 -2.91 -0.02 3.80 16 9 N -0.74 -37.54 5.49 -343.45 -1.89 -39.43 16 10 C 0.16 6.61 5.54 86.38 0.48 7.09 16 11 C -0.09 -2.80 2.59 -9.72 -0.03 -2.83 16 12 H 0.09 2.54 7.74 -2.38 -0.02 2.52 16 13 C -0.11 -3.18 6.19 31.89 0.20 -2.98 16 14 C -0.11 -2.40 6.83 31.67 0.22 -2.18 16 15 C -0.12 -2.80 6.59 31.32 0.21 -2.60 16 16 C 0.15 4.13 2.82 45.72 0.13 4.26 16 17 H 0.07 2.34 7.26 -2.39 -0.02 2.32 16 18 N -0.70 -17.07 4.93 -442.04 -2.18 -19.25 16 19 C 0.56 15.15 7.76 86.76 0.67 15.83 16 20 O -0.57 -19.39 15.96 -3.90 -0.06 -19.46 16 21 C -0.15 -3.39 5.87 -20.10 -0.12 -3.50 16 22 C -0.07 -1.39 9.44 22.27 0.21 -1.18 16 23 C -0.11 -2.06 9.95 22.30 0.22 -1.84 16 24 C 0.12 2.63 6.61 40.36 0.27 2.89 16 25 N -0.51 -10.10 10.33 -188.45 -1.95 -12.05 16 26 C 0.14 1.72 11.15 85.06 0.95 2.67 16 27 C -0.17 -1.58 10.03 22.14 0.22 -1.36 16 28 C -0.05 -0.68 9.89 22.53 0.22 -0.46 16 29 C -0.13 -2.53 5.74 -21.29 -0.12 -2.66 16 30 C -0.03 -0.57 9.35 22.82 0.21 -0.36 16 31 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 32 H 0.38 19.95 7.64 -92.71 -0.71 19.25 16 33 H 0.02 0.64 8.02 -2.39 -0.02 0.62 16 34 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 35 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.06 1.87 7.97 -2.38 -0.02 1.85 16 37 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.07 1.59 7.92 -2.39 -0.02 1.57 16 41 H 0.41 8.03 6.34 -92.72 -0.59 7.44 16 42 H 0.15 2.19 6.35 -2.91 -0.02 2.17 16 43 H 0.15 2.52 8.06 -2.91 -0.02 2.50 16 44 H 0.19 0.96 8.06 -2.91 -0.02 0.94 16 45 H 0.18 0.27 8.06 -2.91 -0.02 0.25 16 46 H 0.17 1.23 8.06 -2.91 -0.02 1.21 16 47 H 0.15 2.97 7.62 -2.91 -0.02 2.95 16 Total: -1.00 -74.87 388.39 1.19 -73.68 By element: Atomic # 1 Polarization: 32.67 SS G_CDS: -0.29 Total: 32.38 kcal Atomic # 6 Polarization: -11.31 SS G_CDS: 5.25 Total: -6.06 kcal Atomic # 7 Polarization: -123.41 SS G_CDS: -5.73 Total: -129.14 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -0.06 Total: -19.46 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Total: -74.87 1.19 -73.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482687017.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.385 kcal (2) G-P(sol) polarization free energy of solvation -74.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds