Wall clock time and date at job start Tue Mar 31 2020 22:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86802 * 119.99664 * 2 1 4 4 H 1.48500 * 109.47032 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46979 * 299.99846 * 3 2 1 6 6 H 1.48498 * 109.47319 * 60.00158 * 3 2 1 7 7 C 1.38808 * 120.00236 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00247 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00108 * 359.97438 * 7 2 1 10 10 C 1.46495 * 120.00227 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47115 * 180.02562 * 10 9 7 12 12 H 1.09007 * 109.47080 * 294.99685 * 11 10 9 13 13 N 1.46499 * 109.47455 * 55.00282 * 11 10 9 14 14 C 1.34777 * 120.00199 * 205.00257 * 13 11 10 15 15 O 1.21283 * 119.99750 * 359.97438 * 14 13 11 16 16 C 1.50702 * 119.99928 * 180.27479 * 14 13 11 17 17 C 1.50700 * 109.46869 * 179.72354 * 16 14 13 18 18 C 1.39361 * 119.46715 * 89.99929 * 17 16 14 19 19 C 1.36132 * 120.86448 * 179.97438 * 18 17 16 20 20 C 1.40429 * 119.61634 * 0.02562 * 19 18 17 21 21 C 1.40776 * 121.37216 * 180.02562 * 20 19 18 22 22 C 1.36574 * 118.14650 * 179.97438 * 21 20 19 23 23 C 1.39328 * 119.93838 * 359.97438 * 22 21 20 24 24 N 1.31088 * 121.74865 * 0.02562 * 23 22 21 25 25 C 1.33682 * 121.32015 * 359.95671 * 24 23 22 26 26 C 1.36078 * 119.46343 * 269.72036 * 17 16 14 27 27 C 1.53000 * 109.47023 * 175.00361 * 11 10 9 28 28 C 1.53003 * 117.49778 * 248.74582 * 27 11 10 29 29 C 1.53003 * 117.49721 * 180.08573 * 27 11 10 30 30 H 0.96994 * 120.00014 * 0.02562 * 1 2 3 31 31 H 0.97004 * 119.99295 * 0.02562 * 9 7 2 32 32 H 1.08999 * 109.47015 * 60.00169 * 10 9 7 33 33 H 1.09000 * 109.47061 * 300.00856 * 10 9 7 34 34 H 0.97000 * 119.99484 * 24.99354 * 13 11 10 35 35 H 1.09004 * 109.46965 * 299.72211 * 16 14 13 36 36 H 1.08994 * 109.46990 * 59.72065 * 16 14 13 37 37 H 1.07998 * 119.56459 * 359.95641 * 18 17 16 38 38 H 1.07997 * 120.19243 * 179.97438 * 19 18 17 39 39 H 1.08004 * 120.92376 * 359.94967 * 21 20 19 40 40 H 1.08001 * 120.02783 * 180.02562 * 22 21 20 41 41 H 1.08000 * 119.12749 * 179.97438 * 23 22 21 42 42 H 1.07994 * 120.12604 * 0.02562 * 26 17 16 43 43 H 1.08997 * 115.55344 * 34.41737 * 27 11 10 44 44 H 1.09006 * 117.49635 * 359.97438 * 28 27 11 45 45 H 1.08997 * 117.49768 * 145.02028 * 28 27 11 46 46 H 1.08999 * 117.49745 * 214.97098 * 29 27 11 47 47 H 1.08994 * 117.50266 * 0.02562 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3881 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 6 1.0640 -4.8196 -0.0012 12 1 0.4975 -4.8138 0.9301 13 7 0.1450 -4.6759 -1.1329 14 6 -1.0795 -5.2367 -1.0822 15 8 -1.4203 -5.8609 -0.0997 16 6 -2.0226 -5.0940 -2.2490 17 6 -3.3116 -5.8126 -1.9437 18 6 -4.3484 -5.1241 -1.3166 19 6 -5.5249 -5.7451 -1.0281 20 6 -5.6970 -7.0973 -1.3658 21 6 -6.8982 -7.7756 -1.0852 22 6 -6.9945 -9.0902 -1.4428 23 6 -5.9208 -9.7213 -2.0675 24 7 -4.8037 -9.0864 -2.3273 25 6 -4.6446 -7.7992 -2.0037 26 6 -3.4463 -7.1217 -2.2900 27 6 1.8250 -6.1410 -0.1268 28 6 1.6675 -6.9257 -1.4308 29 6 1.0021 -7.4308 -0.1481 30 1 -0.4850 0.8400 -0.0004 31 1 0.3557 -2.3880 -0.0005 32 1 2.6848 -3.7145 0.8895 33 1 2.6850 -3.7144 -0.8904 34 1 0.4177 -4.1769 -1.9188 35 1 -2.2278 -4.0378 -2.4232 36 1 -1.5671 -5.5273 -3.1394 37 1 -4.2165 -4.0844 -1.0559 38 1 -6.3210 -5.2013 -0.5415 39 1 -7.7206 -7.2706 -0.6002 40 1 -7.9023 -9.6398 -1.2423 41 1 -6.0110 -10.7613 -2.3443 42 1 -2.6345 -7.6393 -2.7792 43 1 2.7971 -6.1724 0.3651 44 1 1.0214 -6.5007 -2.1990 45 1 2.5359 -7.4735 -1.7966 46 1 1.4332 -8.3107 0.3294 47 1 -0.0813 -7.3380 -0.0730 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483569019.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:18 Heat of formation + Delta-G solvation = 56.949542 kcal Electronic energy + Delta-G solvation = -28596.232795 eV Core-core repulsion = 24744.934541 eV Total energy + Delta-G solvation = -3851.298254 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.97718 -39.97141 -37.78461 -36.71914 -34.89982 -33.76727 -33.27852 -32.13497 -31.11240 -30.21754 -28.66520 -27.33908 -24.25563 -24.05346 -23.10322 -22.22081 -22.20684 -21.48566 -20.63506 -19.61581 -18.00947 -17.39510 -17.09268 -16.97644 -16.73442 -15.97989 -15.69235 -14.83339 -14.67152 -14.57666 -14.44694 -14.32160 -14.10912 -13.55003 -13.43738 -13.29339 -13.19763 -12.98411 -12.90583 -12.16446 -12.00310 -11.74740 -11.60210 -11.56488 -11.46380 -11.28763 -11.13392 -10.91227 -10.85838 -10.66438 -10.21621 -10.08149 -9.82451 -9.64172 -9.60111 -9.52396 -8.95398 -8.75746 -8.62519 -8.31888 -6.99298 -5.82099 -3.11470 0.29336 0.69892 1.90118 2.77111 2.89316 3.39493 3.45750 3.47681 3.51225 4.02686 4.09756 4.12710 4.44482 4.53300 4.53774 4.67877 4.73156 4.89676 4.93171 4.95098 5.11264 5.21295 5.22270 5.23334 5.29285 5.40882 5.51013 5.52110 5.58958 5.68644 5.77322 5.81753 5.85888 5.86583 5.99576 6.02206 6.04507 6.23656 6.27331 6.32798 6.39315 6.46301 6.48657 6.55512 6.68922 6.75271 6.94610 7.65663 7.78185 7.85052 8.36076 8.53616 9.48167 10.03737 10.39370 11.40350 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014034 B = 0.002672 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.623020 B =10476.418006 C =12063.396552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.013 4.013 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.240 4.240 8 H 0.071 0.929 9 N -0.731 5.731 10 C 0.148 3.852 11 C 0.169 3.831 12 H 0.090 0.910 13 N -0.708 5.708 14 C 0.518 3.482 15 O -0.535 6.535 16 C -0.111 4.111 17 C -0.035 4.035 18 C -0.093 4.093 19 C -0.100 4.100 20 C -0.103 4.103 21 C -0.057 4.057 22 C -0.182 4.182 23 C 0.124 3.876 24 N -0.473 5.473 25 C 0.129 3.871 26 C -0.083 4.083 27 C -0.160 4.160 28 C -0.176 4.176 29 C -0.187 4.187 30 H 0.254 0.746 31 H 0.386 0.614 32 H 0.033 0.967 33 H 0.026 0.974 34 H 0.405 0.595 35 H 0.111 0.889 36 H 0.103 0.897 37 H 0.131 0.869 38 H 0.130 0.870 39 H 0.137 0.863 40 H 0.135 0.865 41 H 0.156 0.844 42 H 0.133 0.867 43 H 0.108 0.892 44 H 0.091 0.909 45 H 0.086 0.914 46 H 0.083 0.917 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.055 -17.506 -6.190 21.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.376 5.376 10 C 0.020 3.980 11 C 0.065 3.935 12 H 0.108 0.892 13 N -0.359 5.359 14 C 0.304 3.696 15 O -0.412 6.412 16 C -0.150 4.150 17 C -0.037 4.037 18 C -0.111 4.111 19 C -0.118 4.118 20 C -0.105 4.105 21 C -0.083 4.083 22 C -0.202 4.202 23 C -0.048 4.048 24 N -0.181 5.181 25 C 0.008 3.992 26 C -0.102 4.102 27 C -0.180 4.180 28 C -0.214 4.214 29 C -0.224 4.224 30 H 0.064 0.936 31 H 0.220 0.780 32 H 0.051 0.949 33 H 0.044 0.956 34 H 0.240 0.760 35 H 0.129 0.871 36 H 0.122 0.878 37 H 0.149 0.851 38 H 0.148 0.852 39 H 0.155 0.845 40 H 0.152 0.848 41 H 0.174 0.826 42 H 0.151 0.849 43 H 0.126 0.874 44 H 0.109 0.891 45 H 0.104 0.896 46 H 0.101 0.899 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -10.369 -18.165 -5.891 21.729 hybrid contribution -0.342 1.634 0.155 1.677 sum -10.711 -16.530 -5.735 20.515 Atomic orbital electron populations 1.69671 1.05082 1.25553 1.57662 1.24742 0.95528 0.97694 1.02902 0.86121 0.78799 0.84089 0.77179 1.20564 1.21878 1.21877 1.19260 0.91074 0.84035 1.42783 0.91090 1.42350 1.05985 0.99732 1.89560 1.20910 0.93077 0.85116 0.98928 1.20722 0.90157 0.92698 0.89968 0.89214 1.45969 1.14486 1.54614 1.20865 1.20295 0.82044 0.78857 0.88413 1.90651 1.75826 1.41094 1.33647 1.20793 0.92695 1.03353 0.98208 1.19060 0.94388 0.93607 0.96668 1.20894 0.92566 1.00729 0.96882 1.20918 0.98201 0.92922 0.99804 1.18852 0.95115 0.95491 1.01004 1.21475 0.96283 0.94530 0.95996 1.21836 1.00772 0.95904 1.01709 1.22912 0.88283 0.99957 0.93695 1.68016 1.23938 1.08177 1.17968 1.18786 0.93926 0.89899 0.96564 1.20556 0.95943 0.93260 1.00395 1.22697 1.00751 0.92575 1.01985 1.22873 1.02900 1.04002 0.91600 1.23335 1.01593 0.96698 1.00732 0.93567 0.78025 0.94900 0.95585 0.75983 0.87070 0.87843 0.85082 0.85163 0.84547 0.84760 0.82650 0.84936 0.87401 0.89065 0.89589 0.89879 0.86522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.29 13.06 55.49 0.72 -26.57 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 21.91 29.55 -169.99 -5.02 16.89 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 7 C -0.24 -6.49 9.99 -15.06 -0.15 -6.64 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.73 -17.60 5.43 -59.92 -0.33 -17.92 16 10 C 0.15 2.81 5.80 -4.05 -0.02 2.79 16 11 C 0.17 2.79 2.59 -67.93 -0.18 2.62 16 12 H 0.09 1.71 7.58 -51.93 -0.39 1.32 16 13 N -0.71 -10.60 3.05 -53.81 -0.16 -10.76 16 14 C 0.52 7.80 6.66 -10.98 -0.07 7.72 16 15 O -0.53 -9.75 13.06 5.55 0.07 -9.68 16 16 C -0.11 -1.30 5.80 -29.03 -0.17 -1.47 16 17 C -0.03 -0.45 4.34 -104.98 -0.46 -0.90 16 18 C -0.09 -1.16 9.59 -39.92 -0.38 -1.54 16 19 C -0.10 -1.14 9.77 -39.51 -0.39 -1.53 16 20 C -0.10 -1.25 5.74 -106.80 -0.61 -1.86 16 21 C -0.06 -0.53 9.90 -39.22 -0.39 -0.92 16 22 C -0.18 -1.52 10.03 -39.78 -0.40 -1.92 16 23 C 0.12 1.22 11.15 -17.46 -0.19 1.02 16 24 N -0.47 -6.19 10.34 -10.98 -0.11 -6.31 16 25 C 0.13 1.76 6.60 -84.86 -0.56 1.20 16 26 C -0.08 -1.10 9.58 -39.47 -0.38 -1.48 16 27 C -0.16 -2.28 5.71 -90.62 -0.52 -2.80 16 28 C -0.18 -2.26 9.74 -26.69 -0.26 -2.52 16 29 C -0.19 -2.65 9.83 -26.69 -0.26 -2.91 16 30 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 31 H 0.39 9.85 7.33 -40.82 -0.30 9.55 16 32 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.41 5.71 8.60 -40.82 -0.35 5.36 16 35 H 0.11 1.21 8.08 -51.93 -0.42 0.79 16 36 H 0.10 0.95 8.06 -51.93 -0.42 0.53 16 37 H 0.13 1.53 8.06 -52.49 -0.42 1.10 16 38 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 39 H 0.14 0.89 8.06 -52.48 -0.42 0.47 16 40 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 41 H 0.16 1.01 8.06 -52.49 -0.42 0.59 16 42 H 0.13 1.64 8.06 -52.49 -0.42 1.21 16 43 H 0.11 1.43 8.11 -51.93 -0.42 1.01 16 44 H 0.09 1.14 6.67 -51.93 -0.35 0.80 16 45 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 47 H 0.12 1.93 5.01 -51.93 -0.26 1.67 16 LS Contribution 390.64 15.07 5.89 5.89 Total: -1.00 -33.27 390.64 -11.11 -44.38 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: -6.68 Total: 15.65 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: -5.48 Total: -11.57 kcal Atomic # 7 Polarization: -61.68 SS G_CDS: 0.12 Total: -61.56 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.07 Total: -9.68 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.27 -11.11 -44.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483569019.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.327 kcal (2) G-P(sol) polarization free energy of solvation -33.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds