Wall clock time and date at job start Tue Mar 31 2020 22:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86802 * 119.99664 * 2 1 4 4 H 1.48500 * 109.47032 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46979 * 299.99846 * 3 2 1 6 6 H 1.48498 * 109.47319 * 60.00158 * 3 2 1 7 7 C 1.38808 * 120.00236 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00247 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00108 * 359.97438 * 7 2 1 10 10 C 1.46495 * 120.00227 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47115 * 180.02562 * 10 9 7 12 12 H 1.09007 * 109.47080 * 294.99685 * 11 10 9 13 13 N 1.46499 * 109.47455 * 55.00282 * 11 10 9 14 14 C 1.34777 * 120.00199 * 205.00257 * 13 11 10 15 15 O 1.21283 * 119.99750 * 359.97438 * 14 13 11 16 16 C 1.50702 * 119.99928 * 180.27479 * 14 13 11 17 17 C 1.50700 * 109.46869 * 179.72354 * 16 14 13 18 18 C 1.39361 * 119.46715 * 89.99929 * 17 16 14 19 19 C 1.36132 * 120.86448 * 179.97438 * 18 17 16 20 20 C 1.40429 * 119.61634 * 0.02562 * 19 18 17 21 21 C 1.40776 * 121.37216 * 180.02562 * 20 19 18 22 22 C 1.36574 * 118.14650 * 179.97438 * 21 20 19 23 23 C 1.39328 * 119.93838 * 359.97438 * 22 21 20 24 24 N 1.31088 * 121.74865 * 0.02562 * 23 22 21 25 25 C 1.33682 * 121.32015 * 359.95671 * 24 23 22 26 26 C 1.36078 * 119.46343 * 269.72036 * 17 16 14 27 27 C 1.53000 * 109.47023 * 175.00361 * 11 10 9 28 28 C 1.53003 * 117.49778 * 248.74582 * 27 11 10 29 29 C 1.53003 * 117.49721 * 180.08573 * 27 11 10 30 30 H 0.96994 * 120.00014 * 0.02562 * 1 2 3 31 31 H 0.97004 * 119.99295 * 0.02562 * 9 7 2 32 32 H 1.08999 * 109.47015 * 60.00169 * 10 9 7 33 33 H 1.09000 * 109.47061 * 300.00856 * 10 9 7 34 34 H 0.97000 * 119.99484 * 24.99354 * 13 11 10 35 35 H 1.09004 * 109.46965 * 299.72211 * 16 14 13 36 36 H 1.08994 * 109.46990 * 59.72065 * 16 14 13 37 37 H 1.07998 * 119.56459 * 359.95641 * 18 17 16 38 38 H 1.07997 * 120.19243 * 179.97438 * 19 18 17 39 39 H 1.08004 * 120.92376 * 359.94967 * 21 20 19 40 40 H 1.08001 * 120.02783 * 180.02562 * 22 21 20 41 41 H 1.08000 * 119.12749 * 179.97438 * 23 22 21 42 42 H 1.07994 * 120.12604 * 0.02562 * 26 17 16 43 43 H 1.08997 * 115.55344 * 34.41737 * 27 11 10 44 44 H 1.09006 * 117.49635 * 359.97438 * 28 27 11 45 45 H 1.08997 * 117.49768 * 145.02028 * 28 27 11 46 46 H 1.08999 * 117.49745 * 214.97098 * 29 27 11 47 47 H 1.08994 * 117.50266 * 0.02562 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3881 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 6 1.0640 -4.8196 -0.0012 12 1 0.4975 -4.8138 0.9301 13 7 0.1450 -4.6759 -1.1329 14 6 -1.0795 -5.2367 -1.0822 15 8 -1.4203 -5.8609 -0.0997 16 6 -2.0226 -5.0940 -2.2490 17 6 -3.3116 -5.8126 -1.9437 18 6 -4.3484 -5.1241 -1.3166 19 6 -5.5249 -5.7451 -1.0281 20 6 -5.6970 -7.0973 -1.3658 21 6 -6.8982 -7.7756 -1.0852 22 6 -6.9945 -9.0902 -1.4428 23 6 -5.9208 -9.7213 -2.0675 24 7 -4.8037 -9.0864 -2.3273 25 6 -4.6446 -7.7992 -2.0037 26 6 -3.4463 -7.1217 -2.2900 27 6 1.8250 -6.1410 -0.1268 28 6 1.6675 -6.9257 -1.4308 29 6 1.0021 -7.4308 -0.1481 30 1 -0.4850 0.8400 -0.0004 31 1 0.3557 -2.3880 -0.0005 32 1 2.6848 -3.7145 0.8895 33 1 2.6850 -3.7144 -0.8904 34 1 0.4177 -4.1769 -1.9188 35 1 -2.2278 -4.0378 -2.4232 36 1 -1.5671 -5.5273 -3.1394 37 1 -4.2165 -4.0844 -1.0559 38 1 -6.3210 -5.2013 -0.5415 39 1 -7.7206 -7.2706 -0.6002 40 1 -7.9023 -9.6398 -1.2423 41 1 -6.0110 -10.7613 -2.3443 42 1 -2.6345 -7.6393 -2.7792 43 1 2.7971 -6.1724 0.3651 44 1 1.0214 -6.5007 -2.1990 45 1 2.5359 -7.4735 -1.7966 46 1 1.4332 -8.3107 0.3294 47 1 -0.0813 -7.3380 -0.0730 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483569019.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:17 Heat of formation + Delta-G solvation = 37.364641 kcal Electronic energy + Delta-G solvation = -28597.082060 eV Core-core repulsion = 24744.934541 eV Total energy + Delta-G solvation = -3852.147519 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.85112 -41.15052 -38.82168 -37.80825 -36.54188 -34.77962 -34.59779 -33.26311 -32.69184 -31.07903 -30.08571 -28.48677 -25.94324 -25.01979 -24.04284 -23.44663 -23.09193 -22.93332 -21.78425 -20.86808 -19.28953 -18.80271 -18.04381 -17.91209 -17.84076 -17.20562 -17.02887 -16.49048 -15.75711 -15.47366 -15.37278 -15.30041 -15.25594 -15.15008 -14.84584 -14.63557 -14.40178 -13.92331 -13.88003 -13.59792 -13.14107 -12.99441 -12.87763 -12.76244 -12.65283 -12.55620 -12.46530 -12.27121 -12.20833 -12.03813 -11.82851 -11.48235 -11.27090 -10.99445 -10.86193 -10.72589 -10.43987 -9.91054 -9.63325 -9.19465 -8.99657 -7.93467 -5.22482 -0.52088 -0.14670 1.05308 1.48962 1.49920 1.59380 1.69754 1.89326 2.37571 2.56489 2.96373 3.16379 3.31382 3.41110 3.62406 3.63875 3.69701 3.91668 3.93841 4.03530 4.05508 4.10954 4.11452 4.19711 4.21346 4.32579 4.45158 4.50882 4.55680 4.60123 4.62307 4.67000 4.83791 4.87328 4.91373 5.03076 5.06311 5.07688 5.15567 5.17052 5.27346 5.39195 5.41366 5.52212 5.52667 5.62467 5.63435 5.91564 6.27712 6.63873 6.97710 7.33426 7.35386 8.08096 8.32824 9.29601 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014034 B = 0.002672 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.623020 B =10476.418006 C =12063.396552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.072 4.072 3 Si 0.971 3.029 4 H -0.266 1.266 5 H -0.293 1.293 6 H -0.298 1.298 7 C -0.241 4.241 8 H 0.077 0.923 9 N -0.741 5.741 10 C 0.151 3.849 11 C 0.181 3.819 12 H 0.058 0.942 13 N -0.705 5.705 14 C 0.516 3.484 15 O -0.569 6.569 16 C -0.103 4.103 17 C -0.043 4.043 18 C -0.118 4.118 19 C -0.096 4.096 20 C -0.124 4.124 21 C -0.061 4.061 22 C -0.174 4.174 23 C 0.122 3.878 24 N -0.510 5.510 25 C 0.103 3.897 26 C -0.099 4.099 27 C -0.166 4.166 28 C -0.158 4.158 29 C -0.193 4.193 30 H 0.250 0.750 31 H 0.375 0.625 32 H 0.034 0.966 33 H 0.041 0.959 34 H 0.411 0.589 35 H 0.120 0.880 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.156 0.844 39 H 0.167 0.833 40 H 0.175 0.825 41 H 0.187 0.813 42 H 0.131 0.869 43 H 0.122 0.878 44 H 0.093 0.907 45 H 0.108 0.892 46 H 0.097 0.903 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.327 -18.633 -6.862 22.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.265 4.265 3 Si 0.800 3.200 4 H -0.191 1.191 5 H -0.220 1.220 6 H -0.226 1.226 7 C -0.373 4.373 8 H 0.095 0.905 9 N -0.385 5.385 10 C 0.024 3.976 11 C 0.075 3.925 12 H 0.076 0.924 13 N -0.356 5.356 14 C 0.304 3.696 15 O -0.448 6.448 16 C -0.142 4.142 17 C -0.046 4.046 18 C -0.136 4.136 19 C -0.114 4.114 20 C -0.126 4.126 21 C -0.087 4.087 22 C -0.194 4.194 23 C -0.050 4.050 24 N -0.219 5.219 25 C -0.018 4.018 26 C -0.118 4.118 27 C -0.185 4.185 28 C -0.195 4.195 29 C -0.230 4.230 30 H 0.059 0.941 31 H 0.208 0.792 32 H 0.051 0.949 33 H 0.059 0.941 34 H 0.247 0.753 35 H 0.138 0.862 36 H 0.148 0.852 37 H 0.150 0.850 38 H 0.173 0.827 39 H 0.185 0.815 40 H 0.192 0.808 41 H 0.204 0.796 42 H 0.149 0.851 43 H 0.139 0.861 44 H 0.111 0.889 45 H 0.126 0.874 46 H 0.115 0.885 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -10.598 -19.312 -6.581 22.990 hybrid contribution -0.338 1.820 0.403 1.895 sum -10.936 -17.491 -6.177 21.533 Atomic orbital electron populations 1.69820 1.06488 1.25861 1.59478 1.25511 0.96341 1.00890 1.03756 0.85112 0.78294 0.80061 0.76485 1.19086 1.21982 1.22559 1.19640 0.91542 0.85104 1.41034 0.90460 1.42505 1.05690 1.00818 1.89461 1.21011 0.93375 0.83921 0.99281 1.20411 0.89609 0.93139 0.89298 0.92434 1.45915 1.14486 1.54652 1.20521 1.20817 0.82070 0.77895 0.88786 1.90638 1.76393 1.42577 1.35240 1.20799 0.91779 1.04044 0.97610 1.19150 0.94779 0.93674 0.96960 1.21054 0.93384 1.01043 0.98118 1.21240 0.98375 0.92986 0.98843 1.19150 0.96093 0.95915 1.01428 1.21897 0.95970 0.95144 0.95643 1.22274 1.01564 0.95643 0.99900 1.23606 0.87749 1.01263 0.92430 1.68024 1.25867 1.08251 1.19732 1.19034 0.94579 0.90629 0.97510 1.20646 0.96352 0.93568 1.01250 1.22618 1.00924 0.91197 1.03806 1.22969 1.03144 1.02632 0.90774 1.23249 1.00245 0.97087 1.02375 0.94118 0.79242 0.94851 0.94115 0.75322 0.86216 0.85178 0.85026 0.82676 0.81503 0.80795 0.79609 0.85096 0.86055 0.88901 0.87353 0.88491 0.89036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.48 13.06 21.65 0.28 -57.20 16 2 C -0.07 -4.04 5.50 84.86 0.47 -3.58 16 3 Si 0.97 45.10 29.55 68.60 2.03 47.13 16 4 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 6 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 7 C -0.24 -12.96 9.99 84.03 0.84 -12.12 16 8 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 9 N -0.74 -35.91 5.43 -343.47 -1.87 -37.78 16 10 C 0.15 5.69 5.80 86.38 0.50 6.19 16 11 C 0.18 6.03 2.59 44.99 0.12 6.14 16 12 H 0.06 2.30 7.58 -2.38 -0.02 2.28 16 13 N -0.70 -21.33 3.05 -442.53 -1.35 -22.68 16 14 C 0.52 16.04 6.66 87.66 0.58 16.63 16 15 O -0.57 -21.77 13.06 -3.04 -0.04 -21.81 16 16 C -0.10 -2.47 5.80 29.10 0.17 -2.30 16 17 C -0.04 -1.16 4.34 -20.10 -0.09 -1.25 16 18 C -0.12 -3.06 9.59 22.05 0.21 -2.85 16 19 C -0.10 -2.20 9.77 22.31 0.22 -1.98 16 20 C -0.12 -2.97 5.74 -21.28 -0.12 -3.09 16 21 C -0.06 -1.01 9.90 22.50 0.22 -0.79 16 22 C -0.17 -2.41 10.03 22.14 0.22 -2.18 16 23 C 0.12 2.18 11.15 85.07 0.95 3.13 16 24 N -0.51 -13.34 10.34 -188.64 -1.95 -15.29 16 25 C 0.10 2.87 6.60 40.29 0.27 3.13 16 26 C -0.10 -2.77 9.58 22.34 0.21 -2.55 16 27 C -0.17 -4.57 5.71 -10.79 -0.06 -4.63 16 28 C -0.16 -3.77 9.74 30.62 0.30 -3.47 16 29 C -0.19 -5.37 9.83 30.62 0.30 -5.07 16 30 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 31 H 0.38 19.61 7.33 -92.71 -0.68 18.93 16 32 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.41 11.49 8.60 -92.71 -0.80 10.69 16 35 H 0.12 2.65 8.08 -2.38 -0.02 2.64 16 36 H 0.13 2.35 8.06 -2.39 -0.02 2.33 16 37 H 0.13 3.24 8.06 -2.91 -0.02 3.22 16 38 H 0.16 2.57 8.06 -2.91 -0.02 2.54 16 39 H 0.17 1.64 8.06 -2.91 -0.02 1.62 16 40 H 0.17 0.97 8.06 -2.91 -0.02 0.95 16 41 H 0.19 1.93 8.06 -2.91 -0.02 1.91 16 42 H 0.13 3.45 8.06 -2.91 -0.02 3.43 16 43 H 0.12 3.02 8.11 -2.39 -0.02 3.00 16 44 H 0.09 2.19 6.67 -2.38 -0.02 2.17 16 45 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 46 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 47 H 0.09 3.11 5.01 -2.39 -0.01 3.10 16 Total: -1.00 -73.63 390.64 1.94 -71.70 By element: Atomic # 1 Polarization: 47.05 SS G_CDS: -0.47 Total: 46.57 kcal Atomic # 6 Polarization: -15.95 SS G_CDS: 5.31 Total: -10.64 kcal Atomic # 7 Polarization: -128.06 SS G_CDS: -4.89 Total: -132.94 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -0.04 Total: -21.81 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -73.63 1.94 -71.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483569019.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.063 kcal (2) G-P(sol) polarization free energy of solvation -73.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds