Wall clock time and date at job start Tue Mar 31 2020 22:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86803 * 119.99628 * 2 1 4 4 H 1.48497 * 109.46805 * 239.99875 * 3 2 1 5 5 H 1.48496 * 109.47273 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47101 * 119.99900 * 3 2 1 7 7 C 1.38945 * 120.00288 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99843 * 179.97438 * 7 2 1 9 9 N 1.37102 * 120.00131 * 0.02562 * 7 2 1 10 10 C 1.34770 * 120.00077 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99990 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00207 * 179.97438 * 10 9 7 13 13 N 1.46898 * 109.47513 * 180.02562 * 12 10 9 14 14 C 1.46899 * 110.99882 * 179.97438 * 13 12 10 15 15 C 1.53005 * 109.47013 * 179.97438 * 14 13 12 16 16 H 1.09003 * 109.47051 * 64.99909 * 15 14 13 17 17 N 1.46508 * 109.46938 * 305.00288 * 15 14 13 18 18 C 1.34772 * 119.99859 * 154.99897 * 17 15 14 19 19 O 1.21287 * 120.00145 * 359.97438 * 18 17 15 20 20 C 1.50705 * 119.99819 * 179.97438 * 18 17 15 21 21 H 1.09001 * 110.59857 * 38.68199 * 20 18 17 22 22 C 1.54098 * 110.55162 * 275.89677 * 20 18 17 23 23 N 1.47056 * 103.86429 * 241.40615 * 22 20 18 24 24 C 1.33942 * 109.17751 * 0.02562 * 23 22 20 25 25 O 1.21584 * 123.04287 * 179.97438 * 24 23 22 26 26 N 1.33954 * 113.91886 * 359.97438 * 24 23 22 27 27 C 1.52999 * 109.47370 * 185.00172 * 15 14 13 28 28 C 1.53001 * 117.49721 * 248.62349 * 27 15 14 29 29 C 1.52991 * 117.50015 * 180.02562 * 27 15 14 30 30 H 0.96998 * 120.00326 * 0.02562 * 1 2 3 31 31 H 0.96998 * 119.99439 * 359.97438 * 9 7 2 32 32 H 1.08999 * 109.47068 * 59.99363 * 12 10 9 33 33 H 1.09005 * 109.47152 * 300.00237 * 12 10 9 34 34 H 1.00905 * 110.99809 * 56.04619 * 13 12 10 35 35 H 1.08996 * 109.47121 * 60.00041 * 14 13 12 36 36 H 1.08995 * 109.47371 * 299.99499 * 14 13 12 37 37 H 0.96998 * 119.99576 * 334.99619 * 17 15 14 38 38 H 1.09004 * 110.54330 * 122.81129 * 22 20 18 39 39 H 1.08997 * 110.67092 * 0.06499 * 22 20 18 40 40 H 0.97000 * 125.40814 * 180.02562 * 23 22 20 41 41 H 0.96996 * 125.41013 * 179.73223 * 26 24 23 42 42 H 1.09000 * 115.54490 * 34.32596 * 27 15 14 43 43 H 1.09000 * 117.49810 * 359.97438 * 28 27 15 44 44 H 1.09000 * 117.49918 * 145.02090 * 28 27 15 45 45 H 1.09003 * 117.50049 * 214.97734 * 29 27 15 46 46 H 1.09004 * 117.49979 * 359.97438 * 29 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1017 1.6965 -1.2125 5 1 1.2830 2.7465 -0.0006 6 1 3.1017 1.6966 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0001 9 7 1.3235 -2.3907 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2103 -3.5577 0.0010 12 6 1.2440 -4.8629 0.0011 13 7 2.1986 -5.9794 0.0016 14 6 1.4983 -7.2708 0.0028 15 6 2.5233 -8.4068 0.0027 16 1 3.0899 -8.3851 0.9336 17 7 3.4379 -8.2391 -1.1296 18 6 4.6769 -8.7670 -1.0788 19 8 5.0350 -9.3804 -0.0957 20 6 5.6174 -8.5950 -2.2437 21 1 5.5180 -7.5980 -2.6729 22 6 5.3565 -9.6731 -3.3134 23 7 6.6257 -10.4124 -3.3856 24 6 7.4954 -9.8793 -2.5175 25 8 8.6268 -10.2993 -2.3702 26 7 7.0058 -8.8415 -1.8264 27 6 1.7980 -9.7481 -0.1219 28 6 1.8167 -10.6768 1.0939 29 6 2.6548 -11.0155 -0.1399 30 1 -0.4850 0.8400 -0.0004 31 1 0.3535 -2.3906 0.0005 32 1 0.6169 -4.9209 -0.8885 33 1 0.6176 -4.9205 0.8914 34 1 2.8335 -5.9120 0.7830 35 1 0.8732 -7.3459 -0.8869 36 1 0.8738 -7.3446 0.8931 37 1 3.1516 -7.7482 -1.9156 38 1 5.1275 -9.2114 -4.2739 39 1 4.5461 -10.3334 -3.0046 40 1 6.8045 -11.1663 -3.9691 41 1 7.4889 -8.3359 -1.1542 42 1 0.8975 -9.7403 -0.7359 43 1 2.3460 -10.3323 1.9823 44 1 0.9282 -11.2803 1.2800 45 1 2.3180 -11.8419 -0.7658 46 1 3.7353 -10.8937 -0.0634 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483583321.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:28 Heat of formation + Delta-G solvation = -54.836322 kcal Electronic energy + Delta-G solvation = -29382.130989 eV Core-core repulsion = 25115.136073 eV Total energy + Delta-G solvation = -4266.994916 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.56922 -39.90488 -38.37792 -37.65476 -36.32906 -35.69800 -34.14088 -33.68562 -33.25830 -31.30170 -30.33613 -28.80954 -26.37979 -24.48959 -24.02409 -22.53499 -22.27131 -22.01191 -21.10665 -20.54027 -19.32398 -18.25455 -17.96566 -17.82580 -16.79908 -16.47657 -16.36923 -15.88007 -15.61018 -15.34542 -15.11129 -14.63363 -14.55720 -14.50047 -14.17753 -14.08562 -13.77268 -13.46103 -13.35625 -13.24719 -13.05366 -12.61222 -12.13938 -12.03119 -11.63772 -11.57779 -11.55019 -11.47604 -11.06569 -10.61122 -10.53827 -10.48839 -10.44567 -10.28312 -10.25959 -9.66685 -9.55733 -9.16296 -9.11279 -8.56956 -8.20504 -8.02586 -6.47447 -3.88596 2.20201 2.52078 2.72819 3.05035 3.16021 3.22406 3.26469 3.61211 3.76176 3.83502 3.90417 3.96404 4.18398 4.36945 4.54991 4.57912 4.69917 4.82945 4.86926 4.89425 5.04057 5.12027 5.15374 5.20370 5.23728 5.30911 5.46039 5.49451 5.69017 5.70447 5.75475 5.86794 5.95153 6.09450 6.17321 6.31068 6.71142 6.88117 7.02768 7.09593 7.34331 7.47676 7.49543 7.99761 8.00764 8.38287 8.54542 9.11874 9.47713 9.98695 10.70056 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012245 B = 0.002402 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.115596 B =11653.898402 C =13452.299534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.931 3.069 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.301 4.301 8 H 0.102 0.898 9 N -0.562 5.562 10 C 0.439 3.561 11 O -0.584 6.584 12 C 0.051 3.949 13 N -0.666 5.666 14 C 0.051 3.949 15 C 0.180 3.820 16 H 0.088 0.912 17 N -0.696 5.696 18 C 0.507 3.493 19 O -0.527 6.527 20 C 0.102 3.898 21 H 0.121 0.879 22 C 0.106 3.894 23 N -0.740 5.740 24 C 0.706 3.294 25 O -0.586 6.586 26 N -0.712 5.712 27 C -0.169 4.169 28 C -0.171 4.171 29 C -0.182 4.182 30 H 0.272 0.728 31 H 0.392 0.608 32 H 0.086 0.914 33 H 0.044 0.956 34 H 0.351 0.649 35 H 0.079 0.921 36 H 0.046 0.954 37 H 0.408 0.592 38 H 0.096 0.904 39 H 0.086 0.914 40 H 0.431 0.569 41 H 0.436 0.564 42 H 0.106 0.894 43 H 0.094 0.906 44 H 0.092 0.908 45 H 0.086 0.914 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.809 -20.514 -6.092 21.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.178 4.178 3 Si 0.757 3.243 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.430 4.430 8 H 0.120 0.880 9 N -0.199 5.199 10 C 0.224 3.776 11 O -0.468 6.468 12 C -0.082 4.082 13 N -0.299 5.299 14 C -0.079 4.079 15 C 0.075 3.925 16 H 0.106 0.894 17 N -0.347 5.347 18 C 0.291 3.709 19 O -0.403 6.403 20 C -0.009 4.009 21 H 0.138 0.862 22 C -0.020 4.020 23 N -0.403 5.403 24 C 0.405 3.595 25 O -0.464 6.464 26 N -0.374 5.374 27 C -0.189 4.189 28 C -0.208 4.208 29 C -0.219 4.219 30 H 0.082 0.918 31 H 0.225 0.775 32 H 0.105 0.895 33 H 0.062 0.938 34 H 0.170 0.830 35 H 0.097 0.903 36 H 0.064 0.936 37 H 0.243 0.757 38 H 0.114 0.886 39 H 0.104 0.896 40 H 0.273 0.727 41 H 0.278 0.722 42 H 0.124 0.876 43 H 0.113 0.887 44 H 0.111 0.889 45 H 0.104 0.896 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.785 -20.946 -5.981 21.797 hybrid contribution -0.869 1.101 0.602 1.526 sum -0.085 -19.845 -5.379 20.561 Atomic orbital electron populations 1.69596 1.05948 1.28347 1.50375 1.25262 0.95632 0.99754 0.97202 0.85920 0.78785 0.80424 0.79123 1.19848 1.20953 1.19888 1.19648 0.93338 0.82223 1.47834 0.87970 1.41859 1.09201 1.04625 1.64197 1.19779 0.88388 0.84691 0.84695 1.90530 1.13715 1.87038 1.55514 1.21676 0.94295 0.90935 1.01293 1.60088 1.18677 0.99616 1.51523 1.22244 0.95138 0.88733 1.01787 1.20520 0.89732 0.91760 0.90476 0.89409 1.45773 1.13024 1.55248 1.20622 1.20608 0.82534 0.79149 0.88649 1.90682 1.75775 1.40708 1.33179 1.21876 0.83515 1.01936 0.93524 0.86186 1.22236 0.88213 0.92975 0.98589 1.45036 1.13588 1.37204 1.44509 1.15855 0.84250 0.79997 0.79402 1.91002 1.18121 1.65954 1.71325 1.44832 1.12543 1.35454 1.44604 1.22647 1.01674 0.91271 1.03267 1.22909 1.02358 1.02856 0.92688 1.23248 1.00347 0.97414 1.00886 0.91767 0.77468 0.89533 0.93799 0.82988 0.90273 0.93626 0.75690 0.88628 0.89558 0.72688 0.72176 0.87592 0.88713 0.88942 0.89577 0.86541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.83 13.05 55.50 0.72 -23.11 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 20.54 29.55 -169.99 -5.02 15.52 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.30 -8.12 9.68 -14.93 -0.14 -8.26 16 8 H 0.10 2.90 7.16 -52.48 -0.38 2.52 16 9 N -0.56 -13.57 5.29 -10.96 -0.06 -13.62 16 10 C 0.44 9.65 7.82 -10.99 -0.09 9.56 16 11 O -0.58 -14.92 15.78 5.54 0.09 -14.83 16 12 C 0.05 0.78 6.17 -4.98 -0.03 0.75 16 13 N -0.67 -8.85 5.85 -115.06 -0.67 -9.53 16 14 C 0.05 0.48 5.22 -3.82 -0.02 0.46 16 15 C 0.18 1.64 2.51 -67.92 -0.17 1.47 16 16 H 0.09 1.00 7.33 -51.93 -0.38 0.62 16 17 N -0.70 -5.79 4.78 -53.80 -0.26 -6.05 16 18 C 0.51 4.96 6.27 -10.99 -0.07 4.89 16 19 O -0.53 -7.09 13.63 5.55 0.08 -7.01 16 20 C 0.10 0.79 4.17 -68.20 -0.28 0.50 16 21 H 0.12 0.72 8.14 -51.93 -0.42 0.29 16 22 C 0.11 0.58 7.69 -3.17 -0.02 0.55 16 23 N -0.74 -5.92 6.37 -64.70 -0.41 -6.33 16 24 C 0.71 8.65 8.92 -88.40 -0.79 7.86 16 25 O -0.59 -9.77 18.05 5.29 0.10 -9.68 16 26 N -0.71 -7.45 5.63 -59.33 -0.33 -7.78 16 27 C -0.17 -1.35 5.36 -90.62 -0.49 -1.83 16 28 C -0.17 -1.44 10.17 -26.76 -0.27 -1.71 16 29 C -0.18 -1.63 9.73 -26.76 -0.26 -1.89 16 30 H 0.27 6.84 8.31 -40.82 -0.34 6.51 16 31 H 0.39 9.03 7.90 -40.82 -0.32 8.71 16 32 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.35 5.25 8.43 -39.29 -0.33 4.92 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.41 2.79 8.60 -40.82 -0.35 2.44 16 38 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.09 0.41 7.73 -51.93 -0.40 0.01 16 40 H 0.43 2.61 8.96 -40.82 -0.37 2.25 16 41 H 0.44 4.54 8.96 -40.82 -0.37 4.18 16 42 H 0.11 0.72 8.11 -51.93 -0.42 0.30 16 43 H 0.09 0.87 8.05 -51.93 -0.42 0.46 16 44 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.12 1.34 5.02 -51.93 -0.26 1.08 16 LS Contribution 388.22 15.07 5.85 5.85 Total: -1.00 -35.68 388.22 -9.17 -44.85 By element: Atomic # 1 Polarization: 25.37 SS G_CDS: -6.51 Total: 18.86 kcal Atomic # 6 Polarization: 15.60 SS G_CDS: -2.73 Total: 12.86 kcal Atomic # 7 Polarization: -65.41 SS G_CDS: -1.01 Total: -66.42 kcal Atomic # 8 Polarization: -31.78 SS G_CDS: 0.26 Total: -31.52 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.68 -9.17 -44.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483583321.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.990 kcal (2) G-P(sol) polarization free energy of solvation -35.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds