Wall clock time and date at job start Tue Mar 31 2020 22:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86799 * 120.00000 * 2 1 4 4 H 1.48503 * 109.46979 * 270.00201 * 3 2 1 5 5 H 1.48501 * 109.47270 * 29.99830 * 3 2 1 6 6 H 1.48494 * 109.47551 * 150.00026 * 3 2 1 7 7 C 1.38814 * 119.99984 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99401 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00203 * 359.97438 * 7 2 1 10 10 C 1.46498 * 120.00104 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47198 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.47340 * 180.02562 * 11 10 9 13 13 H 1.09005 * 110.87787 * 302.56922 * 12 11 10 14 14 C 1.55158 * 111.00560 * 178.64920 * 12 11 10 15 15 C 1.54314 * 102.86099 * 206.22380 * 14 12 11 16 16 N 1.47026 * 107.27532 * 22.52635 * 15 14 12 17 17 C 1.34777 * 125.64388 * 180.96270 * 16 15 14 18 18 O 1.21588 * 119.99234 * 184.54852 * 17 16 15 19 19 C 1.47568 * 120.00145 * 4.55920 * 17 16 15 20 20 C 1.38702 * 120.43357 * 311.40520 * 19 17 16 21 21 C 1.38999 * 120.75684 * 180.02562 * 20 19 17 22 22 C 1.36337 * 121.18770 * 0.02562 * 21 20 19 23 23 C 1.40356 * 119.92664 * 0.02562 * 22 21 20 24 24 C 1.40689 * 122.09167 * 180.02562 * 23 22 21 25 25 C 1.36267 * 118.66356 * 179.97438 * 24 23 22 26 26 N 1.32512 * 121.83671 * 359.74765 * 25 24 23 27 27 C 1.31318 * 122.72442 * 0.53839 * 26 25 24 28 28 C 1.40141 * 119.91507 * 359.46940 * 27 26 25 29 29 C 1.47427 * 108.70178 * 0.70538 * 16 15 14 30 30 H 0.96998 * 120.00580 * 0.02562 * 1 2 3 31 31 H 0.96997 * 119.99953 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.47052 * 60.00555 * 10 9 7 33 33 H 1.08998 * 109.47242 * 300.00219 * 10 9 7 34 34 H 1.08997 * 109.47623 * 60.00095 * 11 10 9 35 35 H 1.09008 * 109.46994 * 300.00035 * 11 10 9 36 36 H 1.08999 * 110.71928 * 324.78546 * 14 12 11 37 37 H 1.09001 * 110.71656 * 87.88252 * 14 12 11 38 38 H 1.08996 * 109.98729 * 263.04575 * 15 14 12 39 39 H 1.09000 * 109.77120 * 141.88112 * 15 14 12 40 40 H 1.08009 * 119.62311 * 0.02825 * 20 19 17 41 41 H 1.08000 * 119.40319 * 179.97438 * 21 20 19 42 42 H 1.07995 * 120.03345 * 180.02562 * 22 21 20 43 43 H 1.07995 * 120.66792 * 359.96102 * 24 23 22 44 44 H 1.07996 * 119.08010 * 180.02562 * 25 24 23 45 45 H 1.07994 * 120.04111 * 179.75394 * 27 26 25 46 46 H 1.08992 * 110.36860 * 94.93844 * 29 16 15 47 47 H 1.09008 * 110.35911 * 217.15068 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 2.0581 -3.6567 0.0016 11 6 1.0639 -4.8197 0.0022 12 6 1.8289 -6.1448 0.0029 13 1 2.4979 -6.2075 -0.8554 14 6 0.8529 -7.3504 0.0377 15 6 1.6993 -8.4585 0.6990 16 7 2.7630 -7.7954 1.4674 17 6 3.7248 -8.4188 2.1766 18 8 4.5067 -7.7684 2.8429 19 6 3.8289 -9.8904 2.1441 20 6 2.7049 -10.6788 2.3414 21 6 2.7954 -12.0655 2.3128 22 6 3.9865 -12.6909 2.0914 23 6 5.1491 -11.9312 1.8880 24 6 6.4013 -12.5289 1.6553 25 6 7.4846 -11.7241 1.4662 26 7 7.3867 -10.4029 1.4911 27 6 6.2517 -9.7791 1.7080 28 6 5.0775 -10.5159 1.9142 29 6 2.6070 -6.3360 1.3286 30 1 -0.4851 0.8400 -0.0004 31 1 0.3556 -2.3881 0.0016 32 1 2.6854 -3.7141 0.8912 33 1 2.6841 -3.7149 -0.8888 34 1 0.4369 -4.7622 -0.8875 35 1 0.4375 -4.7617 0.8925 36 1 -0.0249 -7.1187 0.6409 37 1 0.5603 -7.6389 -0.9719 38 1 2.1385 -9.0985 -0.0662 39 1 1.0739 -9.0511 1.3667 40 1 1.7484 -10.2098 2.5192 41 1 1.9063 -12.6583 2.4695 42 1 4.0354 -13.7696 2.0726 43 1 6.5020 -13.6038 1.6274 44 1 8.4490 -12.1758 1.2866 45 1 6.2223 -8.6996 1.7229 46 1 2.0355 -5.9343 2.1653 47 1 3.5830 -5.8541 1.2706 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484545360.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:08 Heat of formation + Delta-G solvation = 33.109896 kcal Electronic energy + Delta-G solvation = -28105.749427 eV Core-core repulsion = 24253.417409 eV Total energy + Delta-G solvation = -3852.332019 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.47661 -40.06570 -38.01357 -37.52087 -35.17949 -33.54307 -32.89401 -31.66165 -31.13507 -30.17542 -29.56019 -27.22604 -25.33187 -24.39146 -23.98853 -23.32784 -22.74090 -21.31729 -20.22955 -19.81866 -18.56298 -17.76800 -17.29413 -17.03550 -16.79931 -16.16167 -15.82822 -15.17795 -14.92590 -14.63836 -14.57700 -14.45095 -14.30990 -13.87511 -13.56822 -13.39920 -13.24847 -13.11410 -12.95393 -12.66576 -12.46764 -12.42467 -12.26731 -11.93968 -11.69848 -11.35241 -11.08960 -10.83294 -10.71656 -10.60351 -10.46920 -10.37219 -10.14776 -9.98185 -9.80144 -9.66123 -9.58462 -8.87478 -8.84775 -8.50583 -6.90040 -5.74550 -3.03004 -0.24766 0.44979 1.27257 2.31267 2.56971 2.79535 3.45987 3.51186 3.53081 3.65942 3.92533 4.08702 4.19860 4.26951 4.34188 4.39280 4.47539 4.55362 4.63301 4.64479 4.73711 4.84606 5.03181 5.11952 5.18417 5.24576 5.29807 5.34338 5.47167 5.50720 5.57279 5.58822 5.63140 5.72294 5.76086 5.78399 5.86619 5.87451 6.01974 6.06944 6.17949 6.22203 6.30934 6.35823 6.36847 6.84323 6.88296 7.22407 7.63831 7.72966 7.83250 8.44713 9.55747 10.13780 10.48158 11.48469 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019592 B = 0.002057 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.842196 B =13611.610891 C =14626.743671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.016 4.016 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.734 5.734 10 C 0.150 3.850 11 C -0.114 4.114 12 C -0.094 4.094 13 H 0.086 0.914 14 C -0.129 4.129 15 C 0.096 3.904 16 N -0.609 5.609 17 C 0.571 3.429 18 O -0.525 6.525 19 C -0.086 4.086 20 C -0.087 4.087 21 C -0.101 4.101 22 C -0.094 4.094 23 C -0.026 4.026 24 C -0.159 4.159 25 C 0.079 3.921 26 N -0.485 5.485 27 C 0.157 3.843 28 C -0.081 4.081 29 C 0.110 3.890 30 H 0.255 0.745 31 H 0.383 0.617 32 H 0.020 0.980 33 H 0.018 0.982 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.137 0.863 41 H 0.135 0.865 42 H 0.136 0.864 43 H 0.140 0.860 44 H 0.155 0.845 45 H 0.171 0.829 46 H 0.076 0.924 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.420 -32.745 2.189 33.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.212 4.212 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.378 5.378 10 C 0.023 3.977 11 C -0.153 4.153 12 C -0.114 4.114 13 H 0.104 0.896 14 C -0.167 4.167 15 C -0.026 4.026 16 N -0.343 5.343 17 C 0.359 3.641 18 O -0.402 6.402 19 C -0.091 4.091 20 C -0.106 4.106 21 C -0.121 4.121 22 C -0.112 4.112 23 C -0.031 4.031 24 C -0.179 4.179 25 C -0.064 4.064 26 N -0.192 5.192 27 C -0.014 4.014 28 C -0.083 4.083 29 C -0.012 4.012 30 H 0.064 0.936 31 H 0.217 0.783 32 H 0.038 0.962 33 H 0.036 0.964 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.154 0.846 41 H 0.153 0.847 42 H 0.154 0.846 43 H 0.158 0.842 44 H 0.172 0.828 45 H 0.188 0.812 46 H 0.094 0.906 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.889 -31.940 2.447 32.571 hybrid contribution -0.726 0.326 0.152 0.811 sum 5.162 -31.614 2.599 32.138 Atomic orbital electron populations 1.69654 1.05107 1.25618 1.57989 1.24747 0.95555 0.97732 1.03126 0.86180 0.78697 0.83782 0.77510 1.21731 1.21773 1.20719 1.19245 0.91072 0.84198 1.42409 0.91175 1.42360 1.05859 1.00093 1.89520 1.20687 0.93564 0.85572 0.97886 1.21687 0.98571 0.92401 1.02604 1.22358 0.96875 0.95040 0.97116 0.89571 1.22742 0.98114 0.94220 1.01589 1.22242 0.89046 0.96271 0.95083 1.48473 1.28443 1.08477 1.48877 1.17761 0.80234 0.86629 0.79523 1.90854 1.41896 1.66697 1.40718 1.19850 0.93492 0.93060 1.02673 1.21490 0.97824 0.93846 0.97400 1.20917 0.98358 0.94169 0.98608 1.21134 0.91554 1.00103 0.98426 1.18119 0.94692 0.92097 0.98205 1.21915 0.92382 1.01319 1.02277 1.22317 0.98991 0.89063 0.96025 1.67555 1.28105 1.11261 1.12321 1.23497 0.86324 1.01013 0.90567 1.18732 0.94312 0.93419 1.01881 1.22485 1.01845 0.78864 0.97989 0.93555 0.78336 0.96225 0.96436 0.91219 0.91537 0.90011 0.89741 0.91190 0.91192 0.84577 0.84700 0.84637 0.84193 0.82774 0.81226 0.90560 0.89747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.52 13.06 55.49 0.72 -27.79 16 2 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 3 Si 0.91 22.77 29.55 -169.99 -5.02 17.75 16 4 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 9 N -0.73 -18.75 5.60 -59.91 -0.34 -19.09 16 10 C 0.15 2.97 6.11 -4.04 -0.02 2.94 16 11 C -0.11 -1.68 4.85 -26.73 -0.13 -1.81 16 12 C -0.09 -1.08 3.07 -88.47 -0.27 -1.35 16 13 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 14 C -0.13 -1.08 6.42 -24.90 -0.16 -1.24 16 15 C 0.10 0.77 5.68 -3.07 -0.02 0.75 16 16 N -0.61 -6.89 3.33 -171.74 -0.57 -7.46 16 17 C 0.57 7.35 6.84 -12.46 -0.09 7.27 16 18 O -0.52 -8.64 15.68 5.29 0.08 -8.56 16 19 C -0.09 -0.91 5.41 -104.67 -0.57 -1.47 16 20 C -0.09 -0.66 8.50 -39.13 -0.33 -0.99 16 21 C -0.10 -0.58 9.93 -39.98 -0.40 -0.98 16 22 C -0.09 -0.59 9.79 -39.47 -0.39 -0.97 16 23 C -0.03 -0.23 5.74 -106.84 -0.61 -0.84 16 24 C -0.16 -1.20 9.88 -39.37 -0.39 -1.59 16 25 C 0.08 0.71 11.07 -17.97 -0.20 0.52 16 26 N -0.48 -5.88 10.30 -13.21 -0.14 -6.01 16 27 C 0.16 1.95 10.45 -17.06 -0.18 1.77 16 28 C -0.08 -0.89 5.76 -106.59 -0.61 -1.51 16 29 C 0.11 1.39 5.55 -2.53 -0.01 1.37 16 30 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 31 H 0.38 10.18 7.67 -40.82 -0.31 9.86 16 32 H 0.02 0.40 7.46 -51.93 -0.39 0.01 16 33 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.07 0.99 8.10 -51.92 -0.42 0.57 16 36 H 0.08 0.66 8.04 -51.93 -0.42 0.25 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.43 6.06 -51.93 -0.31 0.11 16 40 H 0.14 0.80 6.05 -52.48 -0.32 0.48 16 41 H 0.14 0.39 8.06 -52.49 -0.42 -0.04 16 42 H 0.14 0.46 8.06 -52.49 -0.42 0.03 16 43 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 44 H 0.15 0.94 8.06 -52.49 -0.42 0.52 16 45 H 0.17 2.26 6.29 -52.49 -0.33 1.93 16 46 H 0.08 1.01 8.00 -51.93 -0.42 0.60 16 47 H 0.08 1.20 8.01 -51.92 -0.42 0.78 16 LS Contribution 384.16 15.07 5.79 5.79 Total: -1.00 -35.15 384.16 -10.78 -45.93 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -6.68 Total: 5.07 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: -4.63 Total: -5.61 kcal Atomic # 7 Polarization: -60.04 SS G_CDS: -0.32 Total: -60.36 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: 0.08 Total: -8.56 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.15 -10.78 -45.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484545360.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.040 kcal (2) G-P(sol) polarization free energy of solvation -35.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds