Wall clock time and date at job start Tue Mar 31 2020 22:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86799 * 120.00000 * 2 1 4 4 H 1.48503 * 109.46979 * 270.00201 * 3 2 1 5 5 H 1.48501 * 109.47270 * 29.99830 * 3 2 1 6 6 H 1.48494 * 109.47551 * 150.00026 * 3 2 1 7 7 C 1.38814 * 119.99984 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99401 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00203 * 359.97438 * 7 2 1 10 10 C 1.46498 * 120.00104 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47198 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.47340 * 180.02562 * 11 10 9 13 13 H 1.09005 * 110.87787 * 302.56922 * 12 11 10 14 14 C 1.55158 * 111.00560 * 178.64920 * 12 11 10 15 15 C 1.54314 * 102.86099 * 206.22380 * 14 12 11 16 16 N 1.47026 * 107.27532 * 22.52635 * 15 14 12 17 17 C 1.34777 * 125.64388 * 180.96270 * 16 15 14 18 18 O 1.21588 * 119.99234 * 184.54852 * 17 16 15 19 19 C 1.47568 * 120.00145 * 4.55920 * 17 16 15 20 20 C 1.38702 * 120.43357 * 311.40520 * 19 17 16 21 21 C 1.38999 * 120.75684 * 180.02562 * 20 19 17 22 22 C 1.36337 * 121.18770 * 0.02562 * 21 20 19 23 23 C 1.40356 * 119.92664 * 0.02562 * 22 21 20 24 24 C 1.40689 * 122.09167 * 180.02562 * 23 22 21 25 25 C 1.36267 * 118.66356 * 179.97438 * 24 23 22 26 26 N 1.32512 * 121.83671 * 359.74765 * 25 24 23 27 27 C 1.31318 * 122.72442 * 0.53839 * 26 25 24 28 28 C 1.40141 * 119.91507 * 359.46940 * 27 26 25 29 29 C 1.47427 * 108.70178 * 0.70538 * 16 15 14 30 30 H 0.96998 * 120.00580 * 0.02562 * 1 2 3 31 31 H 0.96997 * 119.99953 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.47052 * 60.00555 * 10 9 7 33 33 H 1.08998 * 109.47242 * 300.00219 * 10 9 7 34 34 H 1.08997 * 109.47623 * 60.00095 * 11 10 9 35 35 H 1.09008 * 109.46994 * 300.00035 * 11 10 9 36 36 H 1.08999 * 110.71928 * 324.78546 * 14 12 11 37 37 H 1.09001 * 110.71656 * 87.88252 * 14 12 11 38 38 H 1.08996 * 109.98729 * 263.04575 * 15 14 12 39 39 H 1.09000 * 109.77120 * 141.88112 * 15 14 12 40 40 H 1.08009 * 119.62311 * 0.02825 * 20 19 17 41 41 H 1.08000 * 119.40319 * 179.97438 * 21 20 19 42 42 H 1.07995 * 120.03345 * 180.02562 * 22 21 20 43 43 H 1.07995 * 120.66792 * 359.96102 * 24 23 22 44 44 H 1.07996 * 119.08010 * 180.02562 * 25 24 23 45 45 H 1.07994 * 120.04111 * 179.75394 * 27 26 25 46 46 H 1.08992 * 110.36860 * 94.93844 * 29 16 15 47 47 H 1.09008 * 110.35911 * 217.15068 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 2.0581 -3.6567 0.0016 11 6 1.0639 -4.8197 0.0022 12 6 1.8289 -6.1448 0.0029 13 1 2.4979 -6.2075 -0.8554 14 6 0.8529 -7.3504 0.0377 15 6 1.6993 -8.4585 0.6990 16 7 2.7630 -7.7954 1.4674 17 6 3.7248 -8.4188 2.1766 18 8 4.5067 -7.7684 2.8429 19 6 3.8289 -9.8904 2.1441 20 6 2.7049 -10.6788 2.3414 21 6 2.7954 -12.0655 2.3128 22 6 3.9865 -12.6909 2.0914 23 6 5.1491 -11.9312 1.8880 24 6 6.4013 -12.5289 1.6553 25 6 7.4846 -11.7241 1.4662 26 7 7.3867 -10.4029 1.4911 27 6 6.2517 -9.7791 1.7080 28 6 5.0775 -10.5159 1.9142 29 6 2.6070 -6.3360 1.3286 30 1 -0.4851 0.8400 -0.0004 31 1 0.3556 -2.3881 0.0016 32 1 2.6854 -3.7141 0.8912 33 1 2.6841 -3.7149 -0.8888 34 1 0.4369 -4.7622 -0.8875 35 1 0.4375 -4.7617 0.8925 36 1 -0.0249 -7.1187 0.6409 37 1 0.5603 -7.6389 -0.9719 38 1 2.1385 -9.0985 -0.0662 39 1 1.0739 -9.0511 1.3667 40 1 1.7484 -10.2098 2.5192 41 1 1.9063 -12.6583 2.4695 42 1 4.0354 -13.7696 2.0726 43 1 6.5020 -13.6038 1.6274 44 1 8.4490 -12.1758 1.2866 45 1 6.2223 -8.6996 1.7229 46 1 2.0355 -5.9343 2.1653 47 1 3.5830 -5.8541 1.2706 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484545360.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:06 Heat of formation + Delta-G solvation = 10.417797 kcal Electronic energy + Delta-G solvation = -28106.733431 eV Core-core repulsion = 24253.417409 eV Total energy + Delta-G solvation = -3853.316022 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.18667 -40.92515 -38.98204 -38.21216 -36.87191 -34.69061 -33.98409 -32.71253 -32.28092 -30.86333 -30.74735 -28.52807 -26.42192 -25.45284 -24.76100 -24.53307 -23.62667 -22.68386 -21.27795 -20.65432 -19.27125 -19.10072 -18.49966 -17.99195 -17.57170 -17.11004 -16.69830 -16.59502 -15.99327 -15.64287 -15.42268 -15.31118 -15.23746 -15.18544 -15.00657 -14.57998 -14.39033 -14.10863 -13.91403 -13.55040 -13.36296 -13.13594 -13.06379 -12.99606 -12.92430 -12.83111 -12.52823 -12.28209 -12.18786 -12.02575 -11.73233 -11.55131 -11.43205 -11.29730 -11.07148 -10.94580 -10.53924 -10.20305 -9.79710 -9.12084 -9.02187 -7.97943 -5.26664 -0.88511 -0.16154 0.57567 1.45274 1.46979 1.48410 1.55717 1.80156 2.05814 2.53904 2.98817 3.19958 3.35295 3.41033 3.50905 3.59126 3.69704 3.71202 3.74998 3.82398 3.91609 4.13095 4.15027 4.28631 4.31407 4.37498 4.46779 4.49817 4.59902 4.60351 4.62472 4.74642 4.76418 4.81737 4.83342 4.89386 4.94021 5.00816 5.10639 5.14934 5.21149 5.27409 5.33645 5.36981 5.45238 5.47598 5.58685 5.75316 6.25397 6.34567 6.88191 6.94134 7.31361 8.07494 8.31367 9.25430 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019592 B = 0.002057 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.842196 B =13611.610891 C =14626.743671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.075 4.075 3 Si 0.973 3.027 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.273 1.273 7 C -0.249 4.249 8 H 0.070 0.930 9 N -0.747 5.747 10 C 0.147 3.853 11 C -0.099 4.099 12 C -0.086 4.086 13 H 0.087 0.913 14 C -0.118 4.118 15 C 0.094 3.906 16 N -0.608 5.608 17 C 0.566 3.434 18 O -0.579 6.579 19 C -0.121 4.121 20 C -0.066 4.066 21 C -0.100 4.100 22 C -0.077 4.077 23 C -0.046 4.046 24 C -0.135 4.135 25 C 0.051 3.949 26 N -0.512 5.512 27 C 0.120 3.880 28 C -0.093 4.093 29 C 0.108 3.892 30 H 0.253 0.747 31 H 0.376 0.624 32 H 0.012 0.988 33 H 0.016 0.984 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.090 0.910 37 H 0.108 0.892 38 H 0.083 0.917 39 H 0.099 0.901 40 H 0.155 0.845 41 H 0.177 0.823 42 H 0.176 0.824 43 H 0.184 0.816 44 H 0.179 0.821 45 H 0.140 0.860 46 H 0.066 0.934 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.912 -37.062 1.770 37.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.268 4.268 3 Si 0.802 3.198 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.199 1.199 7 C -0.381 4.381 8 H 0.088 0.912 9 N -0.390 5.390 10 C 0.021 3.979 11 C -0.137 4.137 12 C -0.105 4.105 13 H 0.105 0.895 14 C -0.155 4.155 15 C -0.028 4.028 16 N -0.340 5.340 17 C 0.356 3.644 18 O -0.460 6.460 19 C -0.126 4.126 20 C -0.084 4.084 21 C -0.119 4.119 22 C -0.095 4.095 23 C -0.051 4.051 24 C -0.154 4.154 25 C -0.092 4.092 26 N -0.220 5.220 27 C -0.050 4.050 28 C -0.095 4.095 29 C -0.014 4.014 30 H 0.061 0.939 31 H 0.208 0.792 32 H 0.030 0.970 33 H 0.034 0.966 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.108 0.892 37 H 0.126 0.874 38 H 0.102 0.898 39 H 0.117 0.883 40 H 0.173 0.827 41 H 0.194 0.806 42 H 0.194 0.806 43 H 0.201 0.799 44 H 0.196 0.804 45 H 0.157 0.843 46 H 0.085 0.915 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.376 -36.294 2.004 36.611 hybrid contribution -0.241 1.527 0.296 1.574 sum 4.136 -34.767 2.300 35.088 Atomic orbital electron populations 1.69797 1.06446 1.26173 1.59334 1.25574 0.96516 1.01082 1.03587 0.85144 0.77616 0.79460 0.77577 1.21107 1.21809 1.19859 1.19614 0.91380 0.85635 1.41492 0.91182 1.42576 1.05726 1.01257 1.89421 1.20869 0.94506 0.85390 0.97166 1.21518 0.97471 0.91859 1.02838 1.22212 0.97359 0.94855 0.96120 0.89513 1.22751 0.97330 0.92170 1.03288 1.22509 0.88295 0.96303 0.95643 1.48546 1.28968 1.07872 1.48635 1.18289 0.79506 0.87910 0.78678 1.90807 1.43879 1.68151 1.43187 1.19664 0.94740 0.91431 1.06771 1.21833 0.97262 0.94853 0.94496 1.21376 0.99827 0.93290 0.97360 1.21626 0.90320 1.01871 0.95670 1.18507 0.96567 0.91137 0.98896 1.22385 0.91104 1.03146 0.98719 1.22795 1.01015 0.88100 0.97306 1.67428 1.28413 1.13398 1.12766 1.23135 0.87824 1.00133 0.93915 1.18822 0.93724 0.94830 1.02173 1.22340 1.00357 0.80172 0.98564 0.93859 0.79219 0.96992 0.96603 0.90578 0.91573 0.89158 0.87367 0.89844 0.88314 0.82721 0.80575 0.80641 0.79893 0.80354 0.84269 0.91539 0.92688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.96 13.06 21.65 0.28 -59.68 16 2 C -0.08 -4.44 5.50 84.86 0.47 -3.98 16 3 Si 0.97 47.46 29.55 68.60 2.03 49.48 16 4 H -0.28 -13.50 7.11 99.48 0.71 -12.80 16 5 H -0.29 -14.14 7.11 99.48 0.71 -13.44 16 6 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 7 C -0.25 -14.51 9.99 84.04 0.84 -13.67 16 8 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 9 N -0.75 -39.15 5.60 -343.46 -1.92 -41.07 16 10 C 0.15 6.00 6.11 86.38 0.53 6.52 16 11 C -0.10 -2.90 4.85 30.60 0.15 -2.75 16 12 C -0.09 -1.93 3.07 -9.40 -0.03 -1.96 16 13 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 14 C -0.12 -1.65 6.42 31.78 0.20 -1.45 16 15 C 0.09 1.27 5.68 86.73 0.49 1.76 16 16 N -0.61 -14.06 3.33 -815.52 -2.71 -16.77 16 17 C 0.57 15.64 6.84 86.70 0.59 16.23 16 18 O -0.58 -21.46 15.68 -3.99 -0.06 -21.52 16 19 C -0.12 -2.55 5.41 -19.89 -0.11 -2.66 16 20 C -0.07 -0.79 8.50 22.56 0.19 -0.60 16 21 C -0.10 -0.63 9.93 22.01 0.22 -0.41 16 22 C -0.08 -0.57 9.79 22.34 0.22 -0.35 16 23 C -0.05 -0.70 5.74 -21.30 -0.12 -0.82 16 24 C -0.13 -1.65 9.88 22.41 0.22 -1.43 16 25 C 0.05 0.90 11.07 84.13 0.93 1.83 16 26 N -0.51 -13.44 10.30 -195.72 -2.02 -15.46 16 27 C 0.12 3.35 10.45 85.23 0.89 4.25 16 28 C -0.09 -2.10 5.76 -21.14 -0.12 -2.23 16 29 C 0.11 2.91 5.55 86.85 0.48 3.39 16 30 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 31 H 0.38 20.47 7.67 -92.71 -0.71 19.76 16 32 H 0.01 0.51 7.46 -2.39 -0.02 0.50 16 33 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.07 1.96 8.10 -2.38 -0.02 1.94 16 36 H 0.09 1.17 8.04 -2.39 -0.02 1.15 16 37 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.10 0.81 6.06 -2.39 -0.01 0.79 16 40 H 0.16 1.18 6.05 -2.91 -0.02 1.17 16 41 H 0.18 -0.26 8.06 -2.91 -0.02 -0.28 16 42 H 0.18 -0.08 8.06 -2.91 -0.02 -0.10 16 43 H 0.18 0.57 8.06 -2.91 -0.02 0.55 16 44 H 0.18 1.97 8.06 -2.91 -0.02 1.95 16 45 H 0.14 4.52 6.29 -2.91 -0.02 4.50 16 46 H 0.07 1.89 8.00 -2.39 -0.02 1.87 16 47 H 0.05 1.77 8.01 -2.38 -0.02 1.75 16 Total: -1.00 -83.03 384.16 1.92 -81.11 By element: Atomic # 1 Polarization: 21.93 SS G_CDS: 0.28 Total: 22.21 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: 6.05 Total: 1.69 kcal Atomic # 7 Polarization: -126.61 SS G_CDS: -6.37 Total: -132.98 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.06 Total: -21.52 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 2.03 Total: 49.48 kcal Total: -83.03 1.92 -81.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484545360.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.527 kcal (2) G-P(sol) polarization free energy of solvation -83.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds