Wall clock time and date at job start Tue Mar 31 2020 22:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86799 * 119.99907 * 2 1 4 4 H 1.48506 * 109.47304 * 269.99994 * 3 2 1 5 5 H 1.48503 * 109.47274 * 30.00021 * 3 2 1 6 6 H 1.48502 * 109.47120 * 150.00232 * 3 2 1 7 7 C 1.38810 * 120.00163 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00170 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00011 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99868 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46813 * 179.97438 * 10 9 7 12 12 C 1.53781 * 113.61327 * 174.99822 * 11 10 9 13 13 C 1.53781 * 87.08070 * 139.98497 * 12 11 10 14 14 N 1.46506 * 113.61361 * 89.11956 * 13 12 11 15 15 C 1.34774 * 119.99952 * 156.53041 * 14 13 12 16 16 O 1.21286 * 119.99955 * 359.97438 * 15 14 13 17 17 C 1.50696 * 119.99763 * 179.97438 * 15 14 13 18 18 C 1.52998 * 109.46959 * 179.97438 * 17 15 14 19 19 C 1.53006 * 109.47299 * 180.02562 * 18 17 15 20 20 N 1.46501 * 109.47045 * 180.02562 * 19 18 17 21 21 C 1.36372 * 125.96124 * 269.68344 * 20 19 18 22 22 O 1.35635 * 125.98877 * 0.04275 * 21 20 19 23 23 N 1.30902 * 108.02494 * 179.88884 * 21 20 19 24 24 N 1.40116 * 107.93761 * 0.37921 * 23 21 20 25 25 C 1.30911 * 107.94285 * 359.76029 * 24 23 21 26 26 O 1.35627 * 125.99105 * 179.97438 * 25 24 23 27 27 C 1.53773 * 87.17302 * 334.52628 * 13 12 11 28 28 H 0.97000 * 120.00406 * 359.97438 * 1 2 3 29 29 H 0.97002 * 120.00154 * 359.97438 * 9 7 2 30 30 H 1.09005 * 109.47329 * 60.00005 * 10 9 7 31 31 H 1.08995 * 109.47088 * 299.99169 * 10 9 7 32 32 H 1.09005 * 112.84988 * 43.80903 * 11 10 9 33 33 H 1.09001 * 113.61537 * 25.43951 * 12 11 10 34 34 H 1.08998 * 113.61680 * 254.53105 * 12 11 10 35 35 H 1.09002 * 113.61408 * 219.93560 * 13 12 11 36 36 H 0.96997 * 119.99707 * 336.52824 * 14 13 12 37 37 H 1.09001 * 109.47518 * 299.99952 * 17 15 14 38 38 H 1.09002 * 109.47529 * 60.00274 * 17 15 14 39 39 H 1.08998 * 109.47323 * 299.99905 * 18 17 15 40 40 H 1.08999 * 109.47371 * 60.00084 * 18 17 15 41 41 H 1.08998 * 109.46817 * 300.00168 * 19 18 17 42 42 H 1.08999 * 109.46879 * 59.99736 * 19 18 17 43 43 H 0.96705 * 113.99716 * 89.99881 * 22 21 20 44 44 H 0.96696 * 113.99662 * 270.02259 * 26 25 24 45 45 H 1.09007 * 113.61678 * 140.01927 * 27 13 12 46 46 H 1.09000 * 113.61916 * 270.92600 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0581 -3.6567 -0.0027 11 6 1.0639 -4.8197 -0.0031 12 6 1.7305 -6.1999 -0.1272 13 6 0.7052 -6.7005 0.9040 14 7 -0.5384 -7.1909 0.3046 15 6 -1.3106 -8.0673 0.9770 16 8 -0.9758 -8.4502 2.0780 17 6 -2.5901 -8.5713 0.3607 18 6 -3.2701 -9.5468 1.3234 19 6 -4.5689 -10.0591 0.6975 20 7 -5.2203 -10.9928 1.6196 21 6 -5.0290 -12.3424 1.6606 22 8 -4.2020 -13.0550 0.8556 23 7 -5.7808 -12.8293 2.6151 24 7 -6.4811 -11.7649 3.1982 25 6 -6.1284 -10.6647 2.5826 26 8 -6.5863 -9.4174 2.8546 27 6 0.6166 -5.2500 1.4068 28 1 -0.4851 0.8400 0.0004 29 1 0.3555 -2.3881 -0.0016 30 1 2.6848 -3.7153 0.8872 31 1 2.6846 -3.7137 -0.8928 32 1 0.2376 -4.6699 -0.6981 33 1 2.7589 -6.2222 0.2334 34 1 1.6162 -6.6531 -1.1119 35 1 1.1237 -7.3915 1.6358 36 1 -0.8059 -6.8849 -0.5760 37 1 -3.2553 -7.7302 0.1652 38 1 -2.3658 -9.0824 -0.5756 39 1 -2.6049 -10.3879 1.5185 40 1 -3.4945 -9.0362 2.2599 41 1 -5.2344 -9.2183 0.5020 42 1 -4.3442 -10.5699 -0.2389 43 1 -3.3036 -13.1506 1.2006 44 1 -7.3754 -9.1702 2.3534 45 1 -0.3964 -4.9366 1.6596 46 1 1.3410 -5.0128 2.1860 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485095866.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:36 Heat of formation + Delta-G solvation = 2.187954 kcal Electronic energy + Delta-G solvation = -28183.230130 eV Core-core repulsion = 23918.707972 eV Total energy + Delta-G solvation = -4264.522158 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.72100 -40.39035 -38.65213 -38.58513 -37.56247 -36.15383 -34.60696 -33.35760 -32.71654 -30.88723 -30.03127 -28.01687 -26.65227 -25.58458 -23.83918 -23.23790 -23.05014 -22.21192 -21.48174 -20.79768 -19.32707 -19.18590 -19.16118 -17.61875 -17.18762 -17.07700 -16.68585 -16.28681 -16.00622 -15.83951 -14.93061 -14.81291 -14.55487 -14.45592 -14.08205 -13.81519 -13.45986 -13.41590 -13.12736 -12.98748 -12.88249 -12.66855 -12.43538 -12.36554 -12.18941 -11.73208 -11.70181 -11.53121 -11.08009 -10.96716 -10.86213 -10.56668 -10.51112 -10.40792 -10.14061 -10.08746 -9.89784 -9.88849 -9.65755 -9.12482 -8.88335 -6.94126 -5.79660 -3.07861 1.05065 1.25299 1.77630 2.37436 2.75775 2.87044 3.31515 3.40945 3.46242 3.47947 3.86372 4.10164 4.28918 4.50132 4.54425 4.57194 4.64506 4.71010 4.74736 4.79124 4.82414 4.99454 5.03220 5.06523 5.14020 5.43101 5.54650 5.58474 5.63368 5.66204 5.78066 5.86473 5.93751 6.04168 6.16085 6.23756 6.35961 6.53464 6.55108 6.73019 6.82998 6.87810 7.29460 7.43402 7.67017 7.99720 8.39631 9.50711 10.09420 10.43793 11.43330 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020147 B = 0.001642 C = 0.001554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.469740 B =17052.986780 C =18018.373228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.732 5.732 10 C 0.162 3.838 11 C -0.112 4.112 12 C -0.137 4.137 13 C 0.114 3.886 14 N -0.708 5.708 15 C 0.514 3.486 16 O -0.541 6.541 17 C -0.138 4.138 18 C -0.119 4.119 19 C 0.100 3.900 20 N -0.510 5.510 21 C 0.406 3.594 22 O -0.437 6.437 23 N -0.296 5.296 24 N -0.297 5.297 25 C 0.409 3.591 26 O -0.433 6.433 27 C -0.138 4.138 28 H 0.255 0.745 29 H 0.383 0.617 30 H 0.020 0.980 31 H 0.018 0.982 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.069 0.931 35 H 0.098 0.902 36 H 0.402 0.598 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.100 0.900 42 H 0.103 0.897 43 H 0.414 0.586 44 H 0.412 0.588 45 H 0.068 0.932 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.697 -24.430 -3.011 26.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.034 3.966 11 C -0.131 4.131 12 C -0.176 4.176 13 C 0.009 3.991 14 N -0.359 5.359 15 C 0.301 3.699 16 O -0.418 6.418 17 C -0.179 4.179 18 C -0.158 4.158 19 C -0.023 4.023 20 N -0.230 5.230 21 C 0.096 3.904 22 O -0.237 6.237 23 N -0.141 5.141 24 N -0.142 5.142 25 C 0.099 3.901 26 O -0.233 6.233 27 C -0.177 4.177 28 H 0.064 0.936 29 H 0.216 0.784 30 H 0.038 0.962 31 H 0.036 0.964 32 H 0.106 0.894 33 H 0.113 0.887 34 H 0.087 0.913 35 H 0.116 0.884 36 H 0.237 0.763 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.094 0.906 40 H 0.102 0.898 41 H 0.118 0.882 42 H 0.121 0.879 43 H 0.272 0.728 44 H 0.271 0.729 45 H 0.087 0.913 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -10.022 -25.595 -1.203 27.513 hybrid contribution 0.804 2.380 -1.568 2.961 sum -9.218 -23.215 -2.771 25.131 Atomic orbital electron populations 1.69652 1.05122 1.25623 1.57920 1.24739 0.95540 0.97716 1.03097 0.86185 0.78667 0.83813 0.77499 1.21739 1.21766 1.20766 1.19250 0.91047 0.84268 1.42510 0.91223 1.42339 1.05804 0.99992 1.89429 1.20643 0.93023 0.85233 0.97698 1.22803 0.99077 0.94222 0.97017 1.23304 0.98913 0.96621 0.98765 1.21957 0.84448 0.96045 0.96624 1.45707 1.23400 1.45462 1.21314 1.20490 0.85182 0.78605 0.85673 1.90731 1.72872 1.58156 1.20062 1.21554 0.95438 1.00795 1.00096 1.21668 0.94623 0.99815 0.99688 1.22029 0.95267 0.92947 0.92097 1.47140 1.37391 1.08194 1.30280 1.21330 0.96883 0.79108 0.93058 1.84929 1.26084 1.69227 1.43459 1.78381 1.10939 1.18160 1.06586 1.78395 1.20417 0.93924 1.21415 1.21355 0.92218 0.87995 0.88580 1.85005 1.49342 1.23425 1.65515 1.23452 1.02473 0.94070 0.97703 0.93551 0.78371 0.96208 0.96399 0.89447 0.88695 0.91269 0.88435 0.76329 0.88079 0.88333 0.90607 0.89776 0.88205 0.87913 0.72770 0.72940 0.91350 0.89121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.99 13.06 55.49 0.72 -27.26 16 2 C -0.02 -0.43 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.25 29.55 -169.99 -5.02 17.23 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 8 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 9 N -0.73 -18.17 5.60 -59.90 -0.34 -18.50 16 10 C 0.16 3.10 6.10 -4.04 -0.02 3.08 16 11 C -0.11 -1.62 3.65 -89.67 -0.33 -1.95 16 12 C -0.14 -1.50 7.38 -25.92 -0.19 -1.69 16 13 C 0.11 1.30 4.29 -67.12 -0.29 1.02 16 14 N -0.71 -6.54 5.26 -53.02 -0.28 -6.82 16 15 C 0.51 5.00 7.83 -10.99 -0.09 4.92 16 16 O -0.54 -7.66 15.60 5.55 0.09 -7.57 16 17 C -0.14 -0.68 5.70 -27.89 -0.16 -0.83 16 18 C -0.12 -0.68 4.83 -26.73 -0.13 -0.80 16 19 C 0.10 0.37 6.01 -4.04 -0.02 0.35 16 20 N -0.51 -3.52 2.76 -120.05 -0.33 -3.85 16 21 C 0.41 3.39 9.15 -88.81 -0.81 2.57 16 22 O -0.44 -2.36 13.58 -18.60 -0.25 -2.61 16 23 N -0.30 -3.45 12.72 29.66 0.38 -3.08 16 24 N -0.30 -3.51 12.72 29.66 0.38 -3.13 16 25 C 0.41 3.52 9.15 -88.81 -0.81 2.71 16 26 O -0.43 -2.62 13.58 -18.58 -0.25 -2.87 16 27 C -0.14 -1.94 7.45 -25.78 -0.19 -2.13 16 28 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 29 H 0.38 9.97 7.67 -40.82 -0.31 9.66 16 30 H 0.02 0.39 7.85 -51.93 -0.41 -0.02 16 31 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.09 1.00 8.10 -51.93 -0.42 0.58 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.10 1.21 7.50 -51.93 -0.39 0.82 16 36 H 0.40 2.78 8.70 -40.82 -0.36 2.42 16 37 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.08 0.49 8.10 -51.93 -0.42 0.07 16 40 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 41 H 0.10 0.20 8.14 -51.93 -0.42 -0.22 16 42 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16 43 H 0.41 0.31 9.06 45.56 0.41 0.72 16 44 H 0.41 0.17 9.06 45.56 0.41 0.59 16 45 H 0.07 1.04 8.14 -51.92 -0.42 0.61 16 46 H 0.09 1.32 7.90 -51.93 -0.41 0.91 16 LS Contribution 396.11 15.07 5.97 5.97 Total: -1.00 -39.45 396.11 -7.47 -46.92 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -5.24 Total: 5.69 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: -3.29 Total: -0.11 kcal Atomic # 7 Polarization: -63.17 SS G_CDS: 0.53 Total: -62.64 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: -0.42 Total: -13.05 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -39.45 -7.47 -46.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485095866.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.110 kcal (2) G-P(sol) polarization free energy of solvation -39.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds