Wall clock time and date at job start Tue Mar 31 2020 22:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86799 * 119.99907 * 2 1 4 4 H 1.48506 * 109.47304 * 269.99994 * 3 2 1 5 5 H 1.48503 * 109.47274 * 30.00021 * 3 2 1 6 6 H 1.48502 * 109.47120 * 150.00232 * 3 2 1 7 7 C 1.38810 * 120.00163 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00170 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00011 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99868 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46813 * 179.97438 * 10 9 7 12 12 C 1.53781 * 113.61327 * 174.99822 * 11 10 9 13 13 C 1.53781 * 87.08070 * 139.98497 * 12 11 10 14 14 N 1.46506 * 113.61361 * 89.11956 * 13 12 11 15 15 C 1.34774 * 119.99952 * 156.53041 * 14 13 12 16 16 O 1.21286 * 119.99955 * 359.97438 * 15 14 13 17 17 C 1.50696 * 119.99763 * 179.97438 * 15 14 13 18 18 C 1.52998 * 109.46959 * 179.97438 * 17 15 14 19 19 C 1.53006 * 109.47299 * 180.02562 * 18 17 15 20 20 N 1.46501 * 109.47045 * 180.02562 * 19 18 17 21 21 C 1.36372 * 125.96124 * 269.68344 * 20 19 18 22 22 O 1.35635 * 125.98877 * 0.04275 * 21 20 19 23 23 N 1.30902 * 108.02494 * 179.88884 * 21 20 19 24 24 N 1.40116 * 107.93761 * 0.37921 * 23 21 20 25 25 C 1.30911 * 107.94285 * 359.76029 * 24 23 21 26 26 O 1.35627 * 125.99105 * 179.97438 * 25 24 23 27 27 C 1.53773 * 87.17302 * 334.52628 * 13 12 11 28 28 H 0.97000 * 120.00406 * 359.97438 * 1 2 3 29 29 H 0.97002 * 120.00154 * 359.97438 * 9 7 2 30 30 H 1.09005 * 109.47329 * 60.00005 * 10 9 7 31 31 H 1.08995 * 109.47088 * 299.99169 * 10 9 7 32 32 H 1.09005 * 112.84988 * 43.80903 * 11 10 9 33 33 H 1.09001 * 113.61537 * 25.43951 * 12 11 10 34 34 H 1.08998 * 113.61680 * 254.53105 * 12 11 10 35 35 H 1.09002 * 113.61408 * 219.93560 * 13 12 11 36 36 H 0.96997 * 119.99707 * 336.52824 * 14 13 12 37 37 H 1.09001 * 109.47518 * 299.99952 * 17 15 14 38 38 H 1.09002 * 109.47529 * 60.00274 * 17 15 14 39 39 H 1.08998 * 109.47323 * 299.99905 * 18 17 15 40 40 H 1.08999 * 109.47371 * 60.00084 * 18 17 15 41 41 H 1.08998 * 109.46817 * 300.00168 * 19 18 17 42 42 H 1.08999 * 109.46879 * 59.99736 * 19 18 17 43 43 H 0.96705 * 113.99716 * 89.99881 * 22 21 20 44 44 H 0.96696 * 113.99662 * 270.02259 * 26 25 24 45 45 H 1.09007 * 113.61678 * 140.01927 * 27 13 12 46 46 H 1.09000 * 113.61916 * 270.92600 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0581 -3.6567 -0.0027 11 6 1.0639 -4.8197 -0.0031 12 6 1.7305 -6.1999 -0.1272 13 6 0.7052 -6.7005 0.9040 14 7 -0.5384 -7.1909 0.3046 15 6 -1.3106 -8.0673 0.9770 16 8 -0.9758 -8.4502 2.0780 17 6 -2.5901 -8.5713 0.3607 18 6 -3.2701 -9.5468 1.3234 19 6 -4.5689 -10.0591 0.6975 20 7 -5.2203 -10.9928 1.6196 21 6 -5.0290 -12.3424 1.6606 22 8 -4.2020 -13.0550 0.8556 23 7 -5.7808 -12.8293 2.6151 24 7 -6.4811 -11.7649 3.1982 25 6 -6.1284 -10.6647 2.5826 26 8 -6.5863 -9.4174 2.8546 27 6 0.6166 -5.2500 1.4068 28 1 -0.4851 0.8400 0.0004 29 1 0.3555 -2.3881 -0.0016 30 1 2.6848 -3.7153 0.8872 31 1 2.6846 -3.7137 -0.8928 32 1 0.2376 -4.6699 -0.6981 33 1 2.7589 -6.2222 0.2334 34 1 1.6162 -6.6531 -1.1119 35 1 1.1237 -7.3915 1.6358 36 1 -0.8059 -6.8849 -0.5760 37 1 -3.2553 -7.7302 0.1652 38 1 -2.3658 -9.0824 -0.5756 39 1 -2.6049 -10.3879 1.5185 40 1 -3.4945 -9.0362 2.2599 41 1 -5.2344 -9.2183 0.5020 42 1 -4.3442 -10.5699 -0.2389 43 1 -3.3036 -13.1506 1.2006 44 1 -7.3754 -9.1702 2.3534 45 1 -0.3964 -4.9366 1.6596 46 1 1.3410 -5.0128 2.1860 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485095866.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:36 Heat of formation + Delta-G solvation = -34.900067 kcal Electronic energy + Delta-G solvation = -28184.838387 eV Core-core repulsion = 23918.707972 eV Total energy + Delta-G solvation = -4266.130415 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.30426 -41.27228 -39.56650 -39.12428 -38.04110 -36.68739 -36.30991 -34.44154 -33.41350 -32.68688 -30.68093 -28.91610 -27.87354 -26.62950 -25.28667 -23.99180 -23.82800 -22.92228 -22.66155 -21.47802 -20.29271 -19.82149 -19.66097 -19.06506 -18.26266 -17.70525 -17.32566 -16.93602 -16.79849 -16.66275 -16.37286 -15.79678 -15.72007 -15.26975 -15.14927 -14.97624 -14.68875 -14.43783 -14.00172 -13.82158 -13.48119 -13.42998 -13.35200 -13.17576 -13.08522 -12.90266 -12.86564 -12.67877 -12.34308 -12.18611 -11.95317 -11.93405 -11.74359 -11.50641 -11.34959 -11.15616 -11.10624 -10.89370 -10.83265 -10.55604 -10.01184 -8.98055 -7.95904 -5.23779 0.52131 0.74052 1.15190 1.46889 1.48277 1.56730 1.64381 2.17520 2.22980 2.55588 2.91134 3.37227 3.50992 3.58502 3.60239 3.63791 3.88120 3.94485 3.95515 4.06295 4.16111 4.28776 4.33675 4.39384 4.43135 4.57783 4.67406 4.70581 4.77903 4.84769 4.92534 4.93416 4.99196 5.03350 5.15584 5.15613 5.27918 5.34641 5.38631 5.49288 5.70195 6.24476 6.27276 6.46648 6.59249 6.80998 7.29141 7.33384 8.11430 8.33779 9.27590 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020147 B = 0.001642 C = 0.001554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.469740 B =17052.986780 C =18018.373228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.076 4.076 3 Si 0.973 3.027 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.271 1.271 7 C -0.247 4.247 8 H 0.074 0.926 9 N -0.744 5.744 10 C 0.158 3.842 11 C -0.109 4.109 12 C -0.116 4.116 13 C 0.126 3.874 14 N -0.701 5.701 15 C 0.508 3.492 16 O -0.592 6.592 17 C -0.127 4.127 18 C -0.113 4.113 19 C 0.101 3.899 20 N -0.504 5.504 21 C 0.417 3.583 22 O -0.433 6.433 23 N -0.344 5.344 24 N -0.346 5.346 25 C 0.417 3.583 26 O -0.437 6.437 27 C -0.145 4.145 28 H 0.251 0.749 29 H 0.373 0.627 30 H 0.016 0.984 31 H 0.022 0.978 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.417 0.583 37 H 0.124 0.876 38 H 0.137 0.863 39 H 0.064 0.936 40 H 0.050 0.950 41 H 0.124 0.876 42 H 0.130 0.870 43 H 0.434 0.566 44 H 0.436 0.564 45 H 0.050 0.950 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.145 -24.831 -5.333 26.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.269 4.269 3 Si 0.802 3.198 4 H -0.212 1.212 5 H -0.223 1.223 6 H -0.196 1.196 7 C -0.379 4.379 8 H 0.092 0.908 9 N -0.387 5.387 10 C 0.032 3.968 11 C -0.127 4.127 12 C -0.154 4.154 13 C 0.020 3.980 14 N -0.352 5.352 15 C 0.296 3.704 16 O -0.473 6.473 17 C -0.167 4.167 18 C -0.152 4.152 19 C -0.020 4.020 20 N -0.224 5.224 21 C 0.106 3.894 22 O -0.237 6.237 23 N -0.189 5.189 24 N -0.191 5.191 25 C 0.106 3.894 26 O -0.241 6.241 27 C -0.184 4.184 28 H 0.060 0.940 29 H 0.205 0.795 30 H 0.034 0.966 31 H 0.040 0.960 32 H 0.108 0.892 33 H 0.119 0.881 34 H 0.114 0.886 35 H 0.106 0.894 36 H 0.254 0.746 37 H 0.142 0.858 38 H 0.155 0.845 39 H 0.083 0.917 40 H 0.069 0.931 41 H 0.142 0.858 42 H 0.148 0.852 43 H 0.296 0.704 44 H 0.299 0.701 45 H 0.069 0.931 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.438 -26.008 -3.575 27.897 hybrid contribution 0.705 2.516 -0.847 2.747 sum -8.733 -23.491 -4.422 25.449 Atomic orbital electron populations 1.69801 1.06541 1.26033 1.59584 1.25555 0.96438 1.01078 1.03801 0.85152 0.77657 0.79515 0.77505 1.21203 1.22251 1.19622 1.19662 0.91506 0.85603 1.41107 0.90816 1.42563 1.05591 1.01221 1.89301 1.20847 0.93902 0.84715 0.97378 1.22725 0.98536 0.94184 0.97297 1.23203 0.98785 0.93441 0.99985 1.21696 0.85663 0.94003 0.96619 1.45667 1.22618 1.45138 1.21824 1.21404 0.86225 0.77748 0.85001 1.90718 1.74249 1.59890 1.22443 1.21590 0.92846 1.01535 1.00685 1.21558 0.95563 0.99350 0.98756 1.22276 0.94419 0.93436 0.91878 1.47203 1.36910 1.08080 1.30208 1.21349 0.96233 0.79731 0.92063 1.84906 1.27176 1.68751 1.42835 1.78241 1.12817 1.19188 1.08640 1.78255 1.22396 0.95131 1.23295 1.21375 0.91816 0.88098 0.88096 1.84975 1.50743 1.22000 1.66344 1.23462 1.01096 0.96509 0.97362 0.94027 0.79488 0.96562 0.95983 0.89194 0.88051 0.88586 0.89359 0.74595 0.85777 0.84486 0.91704 0.93116 0.85775 0.85215 0.70377 0.70134 0.93074 0.90310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.61 13.06 21.65 0.28 -58.33 16 2 C -0.08 -4.36 5.50 84.86 0.47 -3.90 16 3 Si 0.97 45.71 29.55 68.60 2.03 47.74 16 4 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 5 H -0.30 -14.01 7.11 99.48 0.71 -13.31 16 6 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 7 C -0.25 -13.71 9.99 84.03 0.84 -12.87 16 8 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 9 N -0.74 -37.05 5.60 -343.44 -1.92 -38.97 16 10 C 0.16 5.95 6.10 86.38 0.53 6.47 16 11 C -0.11 -2.99 3.65 -10.18 -0.04 -3.03 16 12 C -0.12 -2.22 7.38 31.12 0.23 -1.99 16 13 C 0.13 2.70 4.29 45.51 0.20 2.89 16 14 N -0.70 -11.31 5.26 -440.04 -2.32 -13.63 16 15 C 0.51 8.95 7.83 87.66 0.69 9.63 16 16 O -0.59 -16.66 15.60 -3.05 -0.05 -16.70 16 17 C -0.13 -0.80 5.70 29.85 0.17 -0.63 16 18 C -0.11 -1.05 4.83 30.60 0.15 -0.91 16 19 C 0.10 0.43 6.01 86.38 0.52 0.95 16 20 N -0.50 -6.20 2.76 -755.16 -2.08 -8.28 16 21 C 0.42 6.60 9.15 179.72 1.65 8.25 16 22 O -0.43 -3.89 13.58 -89.48 -1.21 -5.10 16 23 N -0.34 -8.22 12.72 -173.65 -2.21 -10.43 16 24 N -0.35 -8.42 12.72 -173.65 -2.21 -10.63 16 25 C 0.42 6.99 9.15 179.71 1.65 8.63 16 26 O -0.44 -4.82 13.58 -89.39 -1.21 -6.03 16 27 C -0.15 -4.05 7.45 31.21 0.23 -3.82 16 28 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 29 H 0.37 19.69 7.67 -92.71 -0.71 18.98 16 30 H 0.02 0.63 7.85 -2.38 -0.02 0.61 16 31 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.09 2.46 8.14 -2.38 -0.02 2.44 16 33 H 0.10 1.87 8.10 -2.39 -0.02 1.85 16 34 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.09 2.12 7.50 -2.39 -0.02 2.10 16 36 H 0.42 4.32 8.70 -92.71 -0.81 3.51 16 37 H 0.12 0.31 8.14 -2.39 -0.02 0.29 16 38 H 0.14 -0.10 8.14 -2.39 -0.02 -0.12 16 39 H 0.06 0.75 8.10 -2.39 -0.02 0.73 16 40 H 0.05 0.83 8.10 -2.39 -0.02 0.81 16 41 H 0.12 -0.02 8.14 -2.39 -0.02 -0.04 16 42 H 0.13 -0.06 8.14 -2.39 -0.02 -0.08 16 43 H 0.43 -0.15 9.06 -74.05 -0.67 -0.82 16 44 H 0.44 -0.35 9.06 -74.06 -0.67 -1.02 16 45 H 0.05 1.57 8.14 -2.38 -0.02 1.56 16 46 H 0.08 2.35 7.90 -2.39 -0.02 2.33 16 Total: -1.00 -89.15 396.11 -5.44 -94.59 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: -1.80 Total: 16.09 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: 7.27 Total: 9.68 kcal Atomic # 7 Polarization: -129.81 SS G_CDS: -10.46 Total: -140.27 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: -2.48 Total: -27.84 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -89.15 -5.44 -94.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485095866.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.694 kcal (2) G-P(sol) polarization free energy of solvation -89.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds