Wall clock time and date at job start Tue Mar 31 2020 22:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 119.99520 * 2 1 4 4 H 1.48504 * 109.47330 * 269.99939 * 3 2 1 5 5 H 1.48501 * 109.47557 * 30.00206 * 3 2 1 6 6 H 1.48503 * 109.46914 * 150.00182 * 3 2 1 7 7 C 1.38806 * 120.00112 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00124 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00362 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00330 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47160 * 179.97438 * 10 9 7 12 12 H 1.08996 * 110.01961 * 306.39075 * 11 10 9 13 13 C 1.53870 * 110.03232 * 67.83454 * 11 10 9 14 14 C 1.54465 * 106.68827 * 119.44038 * 13 11 10 15 15 C 1.54891 * 104.10031 * 23.34365 * 14 13 11 16 16 H 1.09003 * 110.75610 * 80.70091 * 15 14 13 17 17 N 1.46492 * 110.75848 * 203.89579 * 15 14 13 18 18 C 1.34777 * 119.99959 * 271.06195 * 17 15 14 19 19 O 1.21551 * 119.99831 * 0.02562 * 18 17 15 20 20 C 1.47879 * 120.00263 * 179.97438 * 18 17 15 21 21 C 1.40575 * 119.70858 * 359.97438 * 20 18 17 22 22 C 1.35813 * 120.74099 * 179.97438 * 21 20 18 23 23 C 1.40545 * 119.98144 * 0.08736 * 22 21 20 24 24 C 1.40823 * 121.13955 * 179.97438 * 23 22 21 25 25 C 1.36552 * 118.19808 * 179.97438 * 24 23 22 26 26 C 1.39419 * 119.94283 * 0.02562 * 25 24 23 27 27 N 1.31017 * 121.70778 * 0.27867 * 26 25 24 28 28 C 1.33747 * 121.34937 * 359.43360 * 27 26 25 29 29 C 1.38407 * 119.71230 * 179.97438 * 20 18 17 30 30 C 1.54269 * 110.03062 * 185.00151 * 11 10 9 31 31 H 0.96997 * 120.00676 * 359.97438 * 1 2 3 32 32 H 0.97002 * 120.00052 * 359.97438 * 9 7 2 33 33 H 1.09004 * 109.46598 * 59.99614 * 10 9 7 34 34 H 1.08998 * 109.47051 * 299.99672 * 10 9 7 35 35 H 1.09001 * 110.03617 * 238.56747 * 13 11 10 36 36 H 1.09000 * 110.03526 * 359.94692 * 13 11 10 37 37 H 1.08999 * 110.40590 * 264.75892 * 14 13 11 38 38 H 1.09003 * 110.65991 * 142.04884 * 14 13 11 39 39 H 0.96999 * 120.00359 * 91.06327 * 17 15 14 40 40 H 1.08000 * 119.62947 * 0.02562 * 21 20 18 41 41 H 1.08000 * 120.00507 * 180.02562 * 22 21 20 42 42 H 1.08007 * 120.89949 * 359.94968 * 24 23 22 43 43 H 1.08003 * 120.03065 * 179.97438 * 25 24 23 44 44 H 1.08002 * 119.14190 * 179.97438 * 26 25 24 45 45 H 1.08007 * 120.23154 * 359.97438 * 29 20 18 46 46 H 1.09001 * 110.48683 * 98.43162 * 30 11 10 47 47 H 1.08998 * 110.48352 * 335.78041 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0016 10 6 2.0582 -3.6568 -0.0027 11 6 1.0641 -4.8197 -0.0031 12 1 0.3601 -4.7091 0.8216 13 6 0.3065 -4.8650 -1.3416 14 6 0.6225 -6.2337 -1.9840 15 6 1.0218 -7.1299 -0.7855 16 1 0.1367 -7.5023 -0.2698 17 7 1.8687 -8.2406 -1.2272 18 6 1.3071 -9.3997 -1.6242 19 8 0.0979 -9.5232 -1.6162 20 6 2.1619 -10.5208 -2.0707 21 6 3.5596 -10.3707 -2.0790 22 6 4.3645 -11.3868 -2.4844 23 6 3.8015 -12.6044 -2.9035 24 6 4.6130 -13.6737 -3.3292 25 6 4.0025 -14.8298 -3.7232 26 6 2.6120 -14.9264 -3.6971 27 7 1.8595 -13.9277 -3.3061 28 6 2.3943 -12.7701 -2.9023 29 6 1.5789 -11.7086 -2.4766 30 6 1.8182 -6.1596 0.1220 31 1 -0.4851 0.8400 0.0004 32 1 0.3557 -2.3881 -0.0016 33 1 2.6849 -3.7152 0.8872 34 1 2.6848 -3.7137 -0.8928 35 1 -0.7658 -4.7767 -1.1670 36 1 0.6464 -4.0580 -1.9906 37 1 1.4522 -6.1421 -2.6850 38 1 -0.2583 -6.6362 -2.4845 39 1 2.8336 -8.1420 -1.2339 40 1 3.9983 -9.4373 -1.7586 41 1 5.4369 -11.2587 -2.4856 42 1 5.6890 -13.5816 -3.3439 43 1 4.5964 -15.6685 -4.0556 44 1 2.1427 -15.8468 -4.0120 45 1 0.5044 -11.8179 -2.4676 46 1 1.8080 -6.5082 1.1548 47 1 2.8423 -6.0559 -0.2365 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486216887.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:19 Heat of formation + Delta-G solvation = 19.627240 kcal Electronic energy + Delta-G solvation = -27388.249306 eV Core-core repulsion = 23535.332636 eV Total energy + Delta-G solvation = -3852.916670 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.36905 -40.07193 -38.22326 -37.06243 -34.90705 -33.96753 -33.51226 -31.45227 -30.78834 -30.49493 -28.75103 -27.80376 -25.30802 -24.37276 -24.19384 -22.62517 -22.20257 -21.47683 -20.69076 -19.29146 -18.73882 -17.95412 -17.36452 -17.04415 -16.52572 -16.18311 -15.57489 -15.16925 -14.97174 -14.69943 -14.58372 -14.44631 -14.37486 -14.02852 -13.55819 -13.41306 -13.39296 -13.10418 -12.78217 -12.34462 -12.19042 -12.07710 -12.00561 -11.82094 -11.47782 -11.09346 -11.04998 -10.86129 -10.77636 -10.51210 -10.36884 -10.19325 -10.08361 -9.98818 -9.87175 -9.65501 -9.35097 -9.10776 -8.85105 -8.77684 -6.89310 -5.74523 -3.02983 -0.21678 0.15109 1.41233 2.05008 2.87372 2.98647 3.44251 3.49157 3.51089 3.65712 3.78808 4.04470 4.18707 4.33804 4.36608 4.44912 4.59274 4.61680 4.64911 4.76077 4.84975 4.97418 5.04296 5.26507 5.35834 5.40202 5.51753 5.53792 5.56618 5.60699 5.64531 5.69820 5.75138 5.82127 5.85051 5.92140 5.99233 6.12519 6.16514 6.24197 6.29240 6.34431 6.44045 6.57242 6.69205 6.84185 6.95585 7.30068 7.40427 7.71088 7.99515 8.44563 9.55593 10.14746 10.49352 11.48336 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.031558 B = 0.001664 C = 0.001609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.035265 B =16824.966776 C =17401.040617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.240 4.240 8 H 0.069 0.931 9 N -0.732 5.732 10 C 0.161 3.839 11 C -0.095 4.095 12 H 0.075 0.925 13 C -0.115 4.115 14 C -0.132 4.132 15 C 0.138 3.862 16 H 0.097 0.903 17 N -0.714 5.714 18 C 0.556 3.444 19 O -0.531 6.531 20 C -0.116 4.116 21 C -0.090 4.090 22 C -0.100 4.100 23 C -0.088 4.088 24 C -0.061 4.061 25 C -0.168 4.168 26 C 0.130 3.870 27 N -0.466 5.466 28 C 0.116 3.884 29 C -0.023 4.023 30 C -0.120 4.120 31 H 0.255 0.745 32 H 0.384 0.616 33 H 0.016 0.984 34 H 0.018 0.982 35 H 0.062 0.938 36 H 0.078 0.922 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.399 0.601 40 H 0.133 0.867 41 H 0.137 0.863 42 H 0.142 0.858 43 H 0.140 0.860 44 H 0.162 0.838 45 H 0.151 0.849 46 H 0.070 0.930 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.791 -31.839 -6.657 34.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.371 4.371 8 H 0.087 0.913 9 N -0.376 5.376 10 C 0.033 3.967 11 C -0.115 4.115 12 H 0.093 0.907 13 C -0.153 4.153 14 C -0.170 4.170 15 C 0.034 3.966 16 H 0.115 0.885 17 N -0.365 5.365 18 C 0.343 3.657 19 O -0.408 6.408 20 C -0.121 4.121 21 C -0.109 4.109 22 C -0.118 4.118 23 C -0.090 4.090 24 C -0.087 4.087 25 C -0.188 4.188 26 C -0.044 4.044 27 N -0.174 5.174 28 C -0.004 4.004 29 C -0.042 4.042 30 C -0.159 4.159 31 H 0.065 0.935 32 H 0.218 0.782 33 H 0.034 0.966 34 H 0.036 0.964 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.235 0.765 40 H 0.151 0.849 41 H 0.155 0.845 42 H 0.159 0.841 43 H 0.158 0.842 44 H 0.179 0.821 45 H 0.169 0.831 46 H 0.089 0.911 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.100 -31.739 -6.579 33.667 hybrid contribution 1.660 1.067 -0.067 1.975 sum 10.760 -30.672 -6.646 33.178 Atomic orbital electron populations 1.69660 1.05083 1.25603 1.57813 1.24736 0.95516 0.97658 1.03124 0.86198 0.78627 0.83929 0.77479 1.21773 1.21783 1.20822 1.19230 0.91002 0.84266 1.42584 0.91278 1.42369 1.05921 0.99940 1.89399 1.20734 0.93030 0.85388 0.97526 1.21867 0.97809 0.93735 0.98063 0.90654 1.22161 1.00290 0.96311 0.96538 1.22773 1.01433 0.95559 0.97281 1.22143 0.94007 0.85021 0.95460 0.88499 1.45962 1.10537 1.13440 1.66539 1.18173 0.87674 0.82312 0.77533 1.90802 1.14109 1.82248 1.53676 1.19956 0.93684 0.94978 1.03438 1.20991 0.92181 0.99470 0.98242 1.20887 1.00311 0.91791 0.98836 1.18972 0.94042 0.95658 1.00340 1.21540 1.00371 0.92059 0.94716 1.21995 0.96435 0.99119 1.01285 1.23050 0.90745 0.97025 0.93532 1.68048 1.39789 0.99618 1.09912 1.18775 0.90194 0.92791 0.98672 1.21270 1.01084 0.89423 0.92444 1.22612 0.99345 0.94676 0.99248 0.93540 0.78200 0.96586 0.96376 0.91879 0.90285 0.91577 0.91509 0.76535 0.84904 0.84494 0.84058 0.84219 0.82073 0.83089 0.91123 0.90926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.36 13.06 55.49 0.72 -27.64 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.47 29.55 -169.99 -5.02 17.45 16 4 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.73 -18.47 5.39 -59.91 -0.32 -18.80 16 10 C 0.16 3.16 5.27 -4.04 -0.02 3.14 16 11 C -0.10 -1.49 2.96 -89.50 -0.27 -1.76 16 12 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 13 C -0.11 -1.79 6.19 -25.51 -0.16 -1.94 16 14 C -0.13 -1.75 6.53 -24.97 -0.16 -1.91 16 15 C 0.14 1.66 3.21 -65.94 -0.21 1.45 16 16 H 0.10 1.31 7.62 -51.93 -0.40 0.91 16 17 N -0.71 -7.29 5.14 -52.81 -0.27 -7.57 16 18 C 0.56 6.74 7.77 -12.31 -0.10 6.65 16 19 O -0.53 -8.42 15.98 5.32 0.09 -8.34 16 20 C -0.12 -1.16 5.87 -105.01 -0.62 -1.78 16 21 C -0.09 -0.65 9.44 -39.57 -0.37 -1.02 16 22 C -0.10 -0.64 9.74 -39.58 -0.39 -1.02 16 23 C -0.09 -0.69 5.75 -106.73 -0.61 -1.31 16 24 C -0.06 -0.33 9.89 -39.21 -0.39 -0.72 16 25 C -0.17 -0.81 10.03 -39.75 -0.40 -1.21 16 26 C 0.13 0.85 11.15 -17.46 -0.19 0.66 16 27 N -0.47 -4.68 10.34 -10.98 -0.11 -4.79 16 28 C 0.12 1.18 6.60 -84.88 -0.56 0.62 16 29 C -0.02 -0.25 9.56 -38.68 -0.37 -0.62 16 30 C -0.12 -1.44 5.98 -25.07 -0.15 -1.59 16 31 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 32 H 0.38 10.22 7.55 -40.82 -0.31 9.91 16 33 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.08 1.41 7.61 -51.93 -0.40 1.01 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.40 2.93 6.53 -40.82 -0.27 2.66 16 40 H 0.13 0.61 6.34 -52.49 -0.33 0.28 16 41 H 0.14 0.48 8.06 -52.49 -0.42 0.05 16 42 H 0.14 0.36 8.06 -52.48 -0.42 -0.07 16 43 H 0.14 0.24 8.06 -52.48 -0.42 -0.18 16 44 H 0.16 0.56 8.06 -52.49 -0.42 0.14 16 45 H 0.15 1.77 7.61 -52.48 -0.40 1.37 16 46 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 47 H 0.07 0.79 7.73 -51.93 -0.40 0.39 16 LS Contribution 388.54 15.07 5.86 5.86 Total: -1.00 -35.02 388.54 -10.97 -46.00 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -6.70 Total: 7.58 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: -5.21 Total: -9.75 kcal Atomic # 7 Polarization: -58.81 SS G_CDS: 0.02 Total: -58.79 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: 0.09 Total: -8.34 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.02 -10.97 -46.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486216887.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.624 kcal (2) G-P(sol) polarization free energy of solvation -35.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds