Wall clock time and date at job start Tue Mar 31 2020 22:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 120.00133 * 2 1 4 4 H 1.48506 * 109.47143 * 270.00262 * 3 2 1 5 5 H 1.48491 * 109.47062 * 30.00237 * 3 2 1 6 6 H 1.48503 * 109.47175 * 150.00450 * 3 2 1 7 7 C 1.38818 * 119.99668 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00244 * 359.97438 * 7 2 1 9 9 N 1.36937 * 119.99737 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99971 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47252 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47173 * 179.97438 * 11 10 9 13 13 H 1.09003 * 110.88304 * 57.43374 * 12 11 10 14 14 C 1.55161 * 111.00591 * 181.35442 * 12 11 10 15 15 C 1.54331 * 103.02154 * 153.38571 * 14 12 11 16 16 N 1.47021 * 107.26471 * 338.13475 * 15 14 12 17 17 C 1.34779 * 125.64751 * 178.84825 * 16 15 14 18 18 O 1.21606 * 119.99791 * 184.99191 * 17 16 15 19 19 C 1.47429 * 119.99753 * 4.99675 * 17 16 15 20 20 C 1.38747 * 120.33568 * 44.43724 * 19 17 16 21 21 C 1.38863 * 120.72684 * 179.97438 * 20 19 17 22 22 C 1.36354 * 121.05738 * 0.02562 * 21 20 19 23 23 C 1.40439 * 120.08577 * 0.02562 * 22 21 20 24 24 C 1.40807 * 121.26219 * 179.97438 * 23 22 21 25 25 C 1.36631 * 118.15408 * 179.97438 * 24 23 22 26 26 C 1.39233 * 119.90675 * 359.97438 * 25 24 23 27 27 N 1.31227 * 121.70074 * 0.02562 * 26 25 24 28 28 C 1.33360 * 121.34780 * 359.96165 * 27 26 25 29 29 C 1.47428 * 108.70258 * 358.59172 * 16 15 14 30 30 H 0.97005 * 119.99930 * 359.97438 * 1 2 3 31 31 H 0.97005 * 120.00331 * 359.97438 * 9 7 2 32 32 H 1.09008 * 109.46762 * 60.00282 * 10 9 7 33 33 H 1.08990 * 109.47400 * 300.00067 * 10 9 7 34 34 H 1.08998 * 109.46884 * 60.00296 * 11 10 9 35 35 H 1.08999 * 109.47532 * 300.00685 * 11 10 9 36 36 H 1.09009 * 110.71744 * 271.94051 * 14 12 11 37 37 H 1.09002 * 110.71840 * 35.03581 * 14 12 11 38 38 H 1.09007 * 109.98652 * 218.66442 * 15 14 12 39 39 H 1.08994 * 109.78549 * 97.49768 * 15 14 12 40 40 H 1.07992 * 119.63533 * 359.97438 * 20 19 17 41 41 H 1.07992 * 119.47427 * 179.74370 * 21 20 19 42 42 H 1.08005 * 119.95548 * 180.02562 * 22 21 20 43 43 H 1.08000 * 120.92318 * 359.97438 * 24 23 22 44 44 H 1.07995 * 120.04948 * 180.02562 * 25 24 23 45 45 H 1.08004 * 119.15291 * 180.02562 * 26 25 24 46 46 H 1.09005 * 110.36394 * 143.18982 * 29 16 15 47 47 H 1.08996 * 110.36532 * 265.40120 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3795 -1.2023 -0.0011 10 6 4.1120 -2.4710 -0.0011 11 6 5.6163 -2.1915 -0.0024 12 6 6.3812 -3.5165 -0.0017 13 1 6.1001 -4.1278 -0.8593 14 6 7.9134 -3.2741 0.0312 15 6 8.4537 -4.5549 0.7017 16 7 7.3454 -5.1497 1.4629 17 6 7.4054 -6.2932 2.1739 18 8 6.4003 -6.7404 2.6920 19 6 8.6897 -7.0016 2.3234 20 6 9.8482 -6.2974 2.6185 21 6 11.0621 -6.9565 2.7617 22 6 11.1494 -8.3095 2.6163 23 6 10.0014 -9.0608 2.3164 24 6 10.0633 -10.4588 2.1603 25 6 8.9074 -11.1268 1.8695 26 6 7.7135 -10.4230 1.7365 27 7 7.6612 -9.1199 1.8829 28 6 8.7533 -8.4094 2.1674 29 6 6.1594 -4.2851 1.3248 30 1 -0.4850 0.8401 0.0004 31 1 3.8646 -0.3622 -0.0014 32 1 3.8483 -3.0427 -0.8909 33 1 3.8491 -3.0423 0.8890 34 1 5.8803 -1.6196 0.8872 35 1 5.8790 -1.6202 -0.8927 36 1 8.3090 -3.1687 -0.9790 37 1 8.1521 -2.3958 0.6310 38 1 9.2740 -4.3054 1.3749 39 1 8.7969 -5.2539 -0.0609 40 1 9.8054 -5.2250 2.7382 41 1 11.9520 -6.3879 2.9874 42 1 12.1026 -8.8039 2.7319 43 1 10.9984 -10.9884 2.2676 44 1 8.9196 -12.1994 1.7438 45 1 6.8070 -10.9633 1.5068 46 1 5.2541 -4.8894 1.2662 47 1 6.0971 -3.5900 2.1621 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501589279.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:46 Heat of formation + Delta-G solvation = 40.961730 kcal Electronic energy + Delta-G solvation = -28128.221612 eV Core-core repulsion = 24276.230075 eV Total energy + Delta-G solvation = -3851.991538 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.38150 -39.94809 -37.81905 -37.27579 -35.27942 -33.88863 -32.96428 -31.32515 -30.98543 -30.49118 -29.74819 -27.37083 -25.30962 -24.44592 -23.94462 -23.11903 -22.55013 -21.18062 -20.25258 -19.67942 -18.82393 -17.71453 -17.51217 -17.29579 -16.57208 -16.16799 -15.58164 -15.11035 -14.91826 -14.63690 -14.58194 -14.35319 -13.97690 -13.90663 -13.72520 -13.41514 -13.34500 -13.00635 -12.89228 -12.63576 -12.41411 -12.25627 -12.15478 -11.84227 -11.77386 -11.59150 -11.20618 -10.96013 -10.87022 -10.66681 -10.49943 -10.34059 -10.12688 -10.05144 -9.61246 -9.54186 -9.24007 -8.84592 -8.76454 -8.61494 -7.18148 -5.71872 -3.07241 -0.21533 0.38468 1.39126 2.37089 2.71856 2.94244 3.40139 3.42366 3.47815 3.72602 3.86669 4.03521 4.27401 4.28352 4.42793 4.45062 4.45740 4.58524 4.63059 4.65525 4.74702 4.84938 4.98306 5.06010 5.20456 5.24609 5.36033 5.42141 5.43683 5.51186 5.55043 5.57695 5.63969 5.73892 5.75512 5.78480 5.85509 5.89195 5.98474 6.03568 6.05153 6.17282 6.24386 6.33559 6.34657 6.78981 6.81983 7.40617 7.61965 8.05392 8.12482 8.47215 9.26563 9.98741 10.18686 11.46689 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022485 B = 0.002074 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.959392 B =13498.175455 C =14338.083421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.001 3.999 3 Si 0.886 3.114 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.242 4.242 8 H 0.090 0.910 9 N -0.758 5.758 10 C 0.154 3.846 11 C -0.118 4.118 12 C -0.094 4.094 13 H 0.087 0.913 14 C -0.128 4.128 15 C 0.098 3.902 16 N -0.618 5.618 17 C 0.578 3.422 18 O -0.506 6.506 19 C -0.097 4.097 20 C -0.068 4.068 21 C -0.123 4.123 22 C -0.076 4.076 23 C -0.109 4.109 24 C -0.057 4.057 25 C -0.174 4.174 26 C 0.136 3.864 27 N -0.454 5.454 28 C 0.160 3.840 29 C 0.111 3.889 30 H 0.259 0.741 31 H 0.360 0.640 32 H 0.027 0.973 33 H 0.028 0.972 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.139 0.861 41 H 0.135 0.865 42 H 0.134 0.866 43 H 0.141 0.859 44 H 0.140 0.860 45 H 0.162 0.838 46 H 0.084 0.916 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.447 -20.112 3.285 37.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.194 4.194 3 Si 0.717 3.283 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.372 4.372 8 H 0.108 0.892 9 N -0.403 5.403 10 C 0.027 3.973 11 C -0.156 4.156 12 C -0.114 4.114 13 H 0.105 0.895 14 C -0.166 4.166 15 C -0.025 4.025 16 N -0.353 5.353 17 C 0.365 3.635 18 O -0.380 6.380 19 C -0.100 4.100 20 C -0.089 4.089 21 C -0.140 4.140 22 C -0.095 4.095 23 C -0.111 4.111 24 C -0.083 4.083 25 C -0.194 4.194 26 C -0.036 4.036 27 N -0.161 5.161 28 C 0.038 3.962 29 C -0.011 4.011 30 H 0.069 0.931 31 H 0.192 0.808 32 H 0.045 0.955 33 H 0.046 0.954 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.157 0.843 41 H 0.153 0.847 42 H 0.152 0.848 43 H 0.158 0.842 44 H 0.157 0.843 45 H 0.179 0.821 46 H 0.103 0.897 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 29.875 -19.969 3.551 36.110 hybrid contribution 1.407 0.721 0.092 1.583 sum 31.282 -19.249 3.643 36.910 Atomic orbital electron populations 1.69709 1.05095 1.25743 1.57776 1.24698 0.95279 0.97240 1.02215 0.86511 0.79173 0.84941 0.77693 1.21125 1.21769 1.20365 1.19090 0.80696 0.94774 1.42679 0.89212 1.42719 1.04082 1.02288 1.91219 1.20671 0.88537 0.89295 0.98787 1.21728 0.96315 0.95218 1.02367 1.22322 0.94188 0.97330 0.97524 0.89484 1.22730 0.95842 0.96650 1.01399 1.22186 0.89883 0.95383 0.95047 1.48414 1.13818 1.23085 1.49984 1.17507 0.87979 0.79087 0.78916 1.90845 1.35460 1.64734 1.47007 1.19801 0.94095 0.91865 1.04272 1.21522 0.91094 1.00514 0.95721 1.20843 0.97818 0.94681 1.00704 1.21149 0.97301 0.94214 0.96863 1.18803 0.94463 0.94669 1.03195 1.21481 0.99241 0.92474 0.95151 1.21965 0.93748 1.01867 1.01846 1.23149 0.97936 0.89916 0.92598 1.68152 1.29166 1.08034 1.10766 1.18558 0.88597 0.92508 0.96582 1.22403 0.88577 0.92588 0.97495 0.93113 0.80751 0.95529 0.95368 0.91645 0.91340 0.89889 0.90232 0.91367 0.91565 0.84339 0.84704 0.84813 0.84153 0.84254 0.82099 0.89719 0.90917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -30.10 13.97 55.49 0.78 -29.32 16 2 C 0.00 0.03 5.50 -17.43 -0.10 -0.06 16 3 Si 0.89 22.48 27.73 -169.99 -4.71 17.77 16 4 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 6 H -0.28 -6.58 6.52 56.52 0.37 -6.21 16 7 C -0.24 -7.10 10.47 -15.06 -0.16 -7.26 16 8 H 0.09 2.82 8.06 -52.49 -0.42 2.40 16 9 N -0.76 -18.50 5.41 -59.91 -0.32 -18.83 16 10 C 0.15 3.01 6.11 -4.04 -0.02 2.99 16 11 C -0.12 -1.70 4.84 -26.73 -0.13 -1.83 16 12 C -0.09 -1.12 3.08 -88.47 -0.27 -1.39 16 13 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 14 C -0.13 -1.13 6.42 -24.89 -0.16 -1.29 16 15 C 0.10 0.88 5.90 -3.06 -0.02 0.86 16 16 N -0.62 -7.88 3.33 -171.78 -0.57 -8.46 16 17 C 0.58 8.68 7.18 -12.52 -0.09 8.59 16 18 O -0.51 -9.76 16.58 5.27 0.09 -9.67 16 19 C -0.10 -1.18 5.42 -104.61 -0.57 -1.74 16 20 C -0.07 -0.57 8.41 -39.16 -0.33 -0.90 16 21 C -0.12 -0.75 9.93 -40.03 -0.40 -1.15 16 22 C -0.08 -0.48 9.75 -39.43 -0.38 -0.86 16 23 C -0.11 -0.97 5.74 -106.83 -0.61 -1.58 16 24 C -0.06 -0.37 9.90 -39.19 -0.39 -0.76 16 25 C -0.17 -1.15 10.03 -39.79 -0.40 -1.55 16 26 C 0.14 1.29 11.15 -17.44 -0.19 1.09 16 27 N -0.45 -6.16 9.26 -10.76 -0.10 -6.26 16 28 C 0.16 1.98 6.59 -84.58 -0.56 1.42 16 29 C 0.11 1.52 5.59 -2.53 -0.01 1.50 16 30 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 31 H 0.36 8.46 5.53 -40.82 -0.23 8.23 16 32 H 0.03 0.53 8.14 -51.92 -0.42 0.11 16 33 H 0.03 0.57 7.45 -51.93 -0.39 0.19 16 34 H 0.06 0.93 8.10 -51.93 -0.42 0.51 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.08 0.61 8.14 -51.92 -0.42 0.19 16 37 H 0.08 0.65 8.04 -51.93 -0.42 0.23 16 38 H 0.07 0.46 5.72 -51.93 -0.30 0.17 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.14 0.92 6.08 -52.49 -0.32 0.60 16 41 H 0.14 0.42 8.06 -52.49 -0.42 0.00 16 42 H 0.13 0.42 8.06 -52.48 -0.42 0.00 16 43 H 0.14 0.44 8.06 -52.49 -0.42 0.02 16 44 H 0.14 0.47 8.06 -52.49 -0.42 0.04 16 45 H 0.16 1.11 8.06 -52.48 -0.42 0.69 16 46 H 0.08 1.34 7.92 -51.93 -0.41 0.93 16 47 H 0.07 1.00 8.01 -51.93 -0.42 0.59 16 LS Contribution 383.23 15.07 5.78 5.78 Total: -1.00 -38.57 383.23 -10.58 -49.15 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -6.71 Total: 3.75 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: -4.79 Total: -3.91 kcal Atomic # 7 Polarization: -62.64 SS G_CDS: -0.22 Total: -62.86 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.09 Total: -9.67 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -4.71 Total: 17.77 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -38.57 -10.58 -49.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501589279.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.113 kcal (2) G-P(sol) polarization free energy of solvation -38.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds