Wall clock time and date at job start Tue Mar 31 2020 22:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 120.00133 * 2 1 4 4 H 1.48506 * 109.47143 * 270.00262 * 3 2 1 5 5 H 1.48491 * 109.47062 * 30.00237 * 3 2 1 6 6 H 1.48503 * 109.47175 * 150.00450 * 3 2 1 7 7 C 1.38818 * 119.99668 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00244 * 359.97438 * 7 2 1 9 9 N 1.36937 * 119.99737 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99971 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47252 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47173 * 179.97438 * 11 10 9 13 13 H 1.09003 * 110.88304 * 57.43374 * 12 11 10 14 14 C 1.55161 * 111.00591 * 181.35442 * 12 11 10 15 15 C 1.54331 * 103.02154 * 153.38571 * 14 12 11 16 16 N 1.47021 * 107.26471 * 338.13475 * 15 14 12 17 17 C 1.34779 * 125.64751 * 178.84825 * 16 15 14 18 18 O 1.21606 * 119.99791 * 184.99191 * 17 16 15 19 19 C 1.47429 * 119.99753 * 4.99675 * 17 16 15 20 20 C 1.38747 * 120.33568 * 44.43724 * 19 17 16 21 21 C 1.38863 * 120.72684 * 179.97438 * 20 19 17 22 22 C 1.36354 * 121.05738 * 0.02562 * 21 20 19 23 23 C 1.40439 * 120.08577 * 0.02562 * 22 21 20 24 24 C 1.40807 * 121.26219 * 179.97438 * 23 22 21 25 25 C 1.36631 * 118.15408 * 179.97438 * 24 23 22 26 26 C 1.39233 * 119.90675 * 359.97438 * 25 24 23 27 27 N 1.31227 * 121.70074 * 0.02562 * 26 25 24 28 28 C 1.33360 * 121.34780 * 359.96165 * 27 26 25 29 29 C 1.47428 * 108.70258 * 358.59172 * 16 15 14 30 30 H 0.97005 * 119.99930 * 359.97438 * 1 2 3 31 31 H 0.97005 * 120.00331 * 359.97438 * 9 7 2 32 32 H 1.09008 * 109.46762 * 60.00282 * 10 9 7 33 33 H 1.08990 * 109.47400 * 300.00067 * 10 9 7 34 34 H 1.08998 * 109.46884 * 60.00296 * 11 10 9 35 35 H 1.08999 * 109.47532 * 300.00685 * 11 10 9 36 36 H 1.09009 * 110.71744 * 271.94051 * 14 12 11 37 37 H 1.09002 * 110.71840 * 35.03581 * 14 12 11 38 38 H 1.09007 * 109.98652 * 218.66442 * 15 14 12 39 39 H 1.08994 * 109.78549 * 97.49768 * 15 14 12 40 40 H 1.07992 * 119.63533 * 359.97438 * 20 19 17 41 41 H 1.07992 * 119.47427 * 179.74370 * 21 20 19 42 42 H 1.08005 * 119.95548 * 180.02562 * 22 21 20 43 43 H 1.08000 * 120.92318 * 359.97438 * 24 23 22 44 44 H 1.07995 * 120.04948 * 180.02562 * 25 24 23 45 45 H 1.08004 * 119.15291 * 180.02562 * 26 25 24 46 46 H 1.09005 * 110.36394 * 143.18982 * 29 16 15 47 47 H 1.08996 * 110.36532 * 265.40120 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3795 -1.2023 -0.0011 10 6 4.1120 -2.4710 -0.0011 11 6 5.6163 -2.1915 -0.0024 12 6 6.3812 -3.5165 -0.0017 13 1 6.1001 -4.1278 -0.8593 14 6 7.9134 -3.2741 0.0312 15 6 8.4537 -4.5549 0.7017 16 7 7.3454 -5.1497 1.4629 17 6 7.4054 -6.2932 2.1739 18 8 6.4003 -6.7404 2.6920 19 6 8.6897 -7.0016 2.3234 20 6 9.8482 -6.2974 2.6185 21 6 11.0621 -6.9565 2.7617 22 6 11.1494 -8.3095 2.6163 23 6 10.0014 -9.0608 2.3164 24 6 10.0633 -10.4588 2.1603 25 6 8.9074 -11.1268 1.8695 26 6 7.7135 -10.4230 1.7365 27 7 7.6612 -9.1199 1.8829 28 6 8.7533 -8.4094 2.1674 29 6 6.1594 -4.2851 1.3248 30 1 -0.4850 0.8401 0.0004 31 1 3.8646 -0.3622 -0.0014 32 1 3.8483 -3.0427 -0.8909 33 1 3.8491 -3.0423 0.8890 34 1 5.8803 -1.6196 0.8872 35 1 5.8790 -1.6202 -0.8927 36 1 8.3090 -3.1687 -0.9790 37 1 8.1521 -2.3958 0.6310 38 1 9.2740 -4.3054 1.3749 39 1 8.7969 -5.2539 -0.0609 40 1 9.8054 -5.2250 2.7382 41 1 11.9520 -6.3879 2.9874 42 1 12.1026 -8.8039 2.7319 43 1 10.9984 -10.9884 2.2676 44 1 8.9196 -12.1994 1.7438 45 1 6.8070 -10.9633 1.5068 46 1 5.2541 -4.8894 1.2662 47 1 6.0971 -3.5900 2.1621 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501589279.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:45 Heat of formation + Delta-G solvation = 14.036562 kcal Electronic energy + Delta-G solvation = -28129.389175 eV Core-core repulsion = 24276.230075 eV Total energy + Delta-G solvation = -3853.159100 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.06200 -40.86906 -38.87402 -37.94332 -37.00589 -34.73355 -34.33813 -33.06801 -31.58262 -31.26394 -30.86940 -28.68701 -26.35956 -25.39160 -24.56338 -24.44500 -23.50041 -22.69589 -21.33063 -20.55342 -19.66269 -19.37950 -18.51055 -17.95370 -17.40622 -17.09161 -16.61710 -16.42068 -15.96938 -15.77002 -15.61621 -15.43886 -15.16105 -14.83089 -14.77501 -14.41811 -14.40397 -14.09832 -13.93151 -13.77932 -13.60518 -13.21301 -13.09693 -12.97401 -12.87228 -12.76204 -12.40182 -12.22222 -12.11552 -11.89959 -11.82099 -11.56816 -11.53776 -11.46043 -11.15303 -10.98282 -10.33896 -9.82758 -9.73547 -9.33080 -9.28353 -8.04884 -5.39883 -0.80014 -0.19424 0.76180 1.36703 1.42742 1.50182 1.64369 1.85567 2.07135 2.47880 3.08268 3.23391 3.25640 3.31000 3.51766 3.60077 3.68439 3.75048 3.83152 3.95352 3.98920 4.02461 4.12138 4.27137 4.29513 4.39680 4.44149 4.46000 4.53025 4.58950 4.66483 4.71302 4.79653 4.88264 4.89477 4.93021 4.99286 5.07291 5.11892 5.15881 5.21692 5.27731 5.33519 5.36952 5.43685 5.55571 5.72432 5.82281 6.18919 6.42850 6.98741 7.05623 7.08262 7.80390 8.02772 9.16937 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022485 B = 0.002074 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.959392 B =13498.175455 C =14338.083421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.070 4.070 3 Si 0.966 3.034 4 H -0.273 1.273 5 H -0.295 1.295 6 H -0.246 1.246 7 C -0.243 4.243 8 H 0.047 0.953 9 N -0.758 5.758 10 C 0.149 3.851 11 C -0.102 4.102 12 C -0.087 4.087 13 H 0.081 0.919 14 C -0.114 4.114 15 C 0.094 3.906 16 N -0.617 5.617 17 C 0.571 3.429 18 O -0.573 6.573 19 C -0.143 4.143 20 C -0.050 4.050 21 C -0.124 4.124 22 C -0.059 4.059 23 C -0.127 4.127 24 C -0.047 4.047 25 C -0.177 4.177 26 C 0.121 3.879 27 N -0.521 5.521 28 C 0.129 3.871 29 C 0.108 3.892 30 H 0.259 0.741 31 H 0.369 0.631 32 H 0.018 0.982 33 H 0.012 0.988 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.108 0.892 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.072 0.928 40 H 0.155 0.845 41 H 0.176 0.824 42 H 0.177 0.823 43 H 0.185 0.815 44 H 0.175 0.825 45 H 0.169 0.831 46 H 0.044 0.956 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 38.006 -19.402 3.079 42.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.261 4.261 3 Si 0.792 3.208 4 H -0.199 1.199 5 H -0.222 1.222 6 H -0.170 1.170 7 C -0.374 4.374 8 H 0.065 0.935 9 N -0.404 5.404 10 C 0.023 3.977 11 C -0.140 4.140 12 C -0.106 4.106 13 H 0.100 0.900 14 C -0.152 4.152 15 C -0.027 4.027 16 N -0.351 5.351 17 C 0.361 3.639 18 O -0.452 6.452 19 C -0.147 4.147 20 C -0.070 4.070 21 C -0.142 4.142 22 C -0.077 4.077 23 C -0.129 4.129 24 C -0.072 4.072 25 C -0.196 4.196 26 C -0.051 4.051 27 N -0.229 5.229 28 C 0.007 3.993 29 C -0.015 4.015 30 H 0.068 0.932 31 H 0.203 0.797 32 H 0.036 0.964 33 H 0.030 0.970 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.127 0.873 37 H 0.115 0.885 38 H 0.117 0.883 39 H 0.091 0.909 40 H 0.172 0.828 41 H 0.194 0.806 42 H 0.194 0.806 43 H 0.202 0.798 44 H 0.192 0.808 45 H 0.186 0.814 46 H 0.063 0.937 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 36.514 -19.271 3.316 41.420 hybrid contribution -0.656 0.317 0.168 0.747 sum 35.858 -18.954 3.483 40.709 Atomic orbital electron populations 1.69920 1.07398 1.26917 1.59395 1.25689 0.96333 1.01895 1.02225 0.85246 0.78655 0.78487 0.78397 1.19866 1.22153 1.17049 1.19040 0.83022 0.93373 1.41998 0.93503 1.42680 1.02383 1.04311 1.91006 1.20846 0.92106 0.87261 0.97517 1.21588 0.92031 0.96690 1.03680 1.22199 0.96921 0.95638 0.95878 0.90045 1.22748 0.92238 0.96963 1.03252 1.22471 0.89343 0.95392 0.95473 1.48526 1.14495 1.22501 1.49554 1.18193 0.88669 0.79147 0.77938 1.90780 1.38019 1.66515 1.49918 1.19725 0.93709 0.92311 1.08963 1.21804 0.90686 1.01236 0.93278 1.21287 0.97953 0.95064 0.99863 1.21684 0.97807 0.94363 0.93836 1.19161 0.93989 0.96114 1.03665 1.22024 1.00751 0.91613 0.92834 1.22274 0.92665 1.03421 1.01244 1.23538 0.99908 0.89330 0.92278 1.68067 1.31222 1.10007 1.13619 1.18901 0.89869 0.92804 0.97740 1.22315 0.88046 0.92376 0.98753 0.93225 0.79690 0.96402 0.96976 0.90631 0.89491 0.87332 0.88533 0.88325 0.90937 0.82783 0.80645 0.80564 0.79791 0.80775 0.81407 0.93687 0.91231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -65.69 13.97 21.65 0.30 -65.39 16 2 C -0.07 -4.32 5.50 84.86 0.47 -3.85 16 3 Si 0.97 46.24 27.73 68.60 1.90 48.15 16 4 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 5 H -0.29 -14.24 7.11 99.48 0.71 -13.54 16 6 H -0.25 -10.42 6.52 99.48 0.65 -9.77 16 7 C -0.24 -14.77 10.47 84.03 0.88 -13.89 16 8 H 0.05 3.16 8.06 -2.91 -0.02 3.14 16 9 N -0.76 -37.11 5.41 -343.46 -1.86 -38.96 16 10 C 0.15 5.98 6.11 86.38 0.53 6.51 16 11 C -0.10 -2.77 4.84 30.59 0.15 -2.62 16 12 C -0.09 -2.00 3.08 -9.40 -0.03 -2.03 16 13 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 14 C -0.11 -1.62 6.42 31.79 0.20 -1.42 16 15 C 0.09 1.49 5.90 86.73 0.51 2.00 16 16 N -0.62 -16.40 3.33 -815.64 -2.71 -19.11 16 17 C 0.57 18.68 7.18 86.66 0.62 19.30 16 18 O -0.57 -24.96 16.58 -4.05 -0.07 -25.03 16 19 C -0.14 -3.61 5.42 -19.86 -0.11 -3.72 16 20 C -0.05 -0.73 8.41 22.54 0.19 -0.54 16 21 C -0.12 -0.98 9.93 21.98 0.22 -0.76 16 22 C -0.06 -0.48 9.75 22.37 0.22 -0.26 16 23 C -0.13 -2.01 5.74 -21.29 -0.12 -2.13 16 24 C -0.05 -0.47 9.90 22.52 0.22 -0.25 16 25 C -0.18 -2.08 10.03 22.13 0.22 -1.86 16 26 C 0.12 2.47 11.15 85.02 0.95 3.41 16 27 N -0.52 -15.57 9.26 -187.96 -1.74 -17.31 16 28 C 0.13 3.32 6.59 40.61 0.27 3.59 16 29 C 0.11 3.15 5.59 86.85 0.49 3.63 16 30 H 0.26 16.29 8.31 -92.70 -0.77 15.52 16 31 H 0.37 16.60 5.53 -92.70 -0.51 16.08 16 32 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 33 H 0.01 0.53 7.45 -2.39 -0.02 0.51 16 34 H 0.08 1.95 8.10 -2.39 -0.02 1.93 16 35 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.11 1.08 8.14 -2.38 -0.02 1.06 16 37 H 0.10 1.12 8.04 -2.39 -0.02 1.10 16 38 H 0.10 0.98 5.72 -2.38 -0.01 0.97 16 39 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.15 1.58 6.08 -2.91 -0.02 1.56 16 41 H 0.18 -0.01 8.06 -2.91 -0.02 -0.04 16 42 H 0.18 -0.07 8.06 -2.91 -0.02 -0.10 16 43 H 0.18 0.14 8.06 -2.91 -0.02 0.12 16 44 H 0.17 0.69 8.06 -2.91 -0.02 0.66 16 45 H 0.17 2.72 8.06 -2.91 -0.02 2.70 16 46 H 0.04 1.63 7.92 -2.38 -0.02 1.61 16 47 H 0.07 2.03 8.01 -2.39 -0.02 2.01 16 Total: -1.00 -95.08 383.23 2.12 -92.97 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: 0.42 Total: 19.58 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: 5.87 Total: 5.11 kcal Atomic # 7 Polarization: -134.77 SS G_CDS: -6.01 Total: -140.78 kcal Atomic # 8 Polarization: -24.96 SS G_CDS: -0.07 Total: -25.03 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 1.90 Total: 48.15 kcal Total: -95.08 2.12 -92.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501589279.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.005 kcal (2) G-P(sol) polarization free energy of solvation -95.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds