Wall clock time and date at job start Tue Mar 31 2020 22:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86805 * 119.99806 * 2 1 4 4 H 1.48498 * 109.47190 * 240.00180 * 3 2 1 5 5 H 1.48502 * 109.47376 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46904 * 120.00262 * 3 2 1 7 7 C 1.38807 * 120.00483 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00406 * 179.97438 * 7 2 1 9 9 N 1.36946 * 119.99753 * 359.97438 * 7 2 1 10 10 C 1.46497 * 119.99770 * 173.76777 * 9 7 2 11 11 C 1.53001 * 112.85282 * 294.86555 * 10 9 7 12 12 N 1.46500 * 109.46992 * 292.10372 * 11 10 9 13 13 C 1.34779 * 119.99557 * 180.19260 * 12 11 10 14 14 O 1.21274 * 120.00401 * 0.02562 * 13 12 11 15 15 C 1.50699 * 119.99795 * 180.02562 * 13 12 11 16 16 C 1.50705 * 109.47200 * 180.02562 * 15 13 12 17 17 C 1.36109 * 120.12298 * 264.97818 * 16 15 13 18 18 C 1.39316 * 121.06505 * 179.97438 * 17 16 15 19 19 C 1.36177 * 120.86822 * 0.06573 * 18 17 16 20 20 C 1.40383 * 119.61184 * 359.91138 * 19 18 17 21 21 C 1.40785 * 121.38185 * 179.78442 * 20 19 18 22 22 C 1.36569 * 118.15015 * 179.80560 * 21 20 19 23 23 C 1.39334 * 119.94299 * 0.50307 * 22 21 20 24 24 N 1.31087 * 121.74798 * 359.71458 * 23 22 21 25 25 C 1.33683 * 121.32622 * 0.02562 * 24 23 22 26 26 C 1.53782 * 113.69128 * 66.14059 * 10 9 7 27 27 C 1.53776 * 87.08303 * 89.12354 * 26 10 9 28 28 C 1.53784 * 87.08446 * 25.42936 * 27 26 10 29 29 H 0.96998 * 119.99855 * 359.97438 * 1 2 3 30 30 H 0.96998 * 119.99400 * 353.77269 * 9 7 2 31 31 H 1.09002 * 109.47071 * 172.10555 * 11 10 9 32 32 H 1.08998 * 109.46676 * 52.10092 * 11 10 9 33 33 H 0.96999 * 120.00156 * 0.20153 * 12 11 10 34 34 H 1.09004 * 109.47120 * 60.00145 * 15 13 12 35 35 H 1.09006 * 109.47405 * 299.99987 * 15 13 12 36 36 H 1.08000 * 119.47222 * 0.02562 * 17 16 15 37 37 H 1.08001 * 119.56674 * 180.02562 * 18 17 16 38 38 H 1.08000 * 120.19076 * 179.97438 * 19 18 17 39 39 H 1.08001 * 120.91974 * 0.28056 * 21 20 19 40 40 H 1.08006 * 120.02894 * 180.23133 * 22 21 20 41 41 H 1.07999 * 119.12874 * 179.73685 * 23 22 21 42 42 H 1.08996 * 113.61085 * 203.67547 * 26 10 9 43 43 H 1.08999 * 113.60994 * 334.57319 * 26 10 9 44 44 H 1.09005 * 113.61331 * 270.88514 * 27 26 10 45 45 H 1.08996 * 113.61828 * 139.97969 * 27 26 10 46 46 H 1.08992 * 113.62024 * 220.01704 * 28 27 26 47 47 H 1.09005 * 113.60573 * 89.11530 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7466 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 7 1.3257 -2.3881 -0.0005 10 6 2.0517 -3.6529 -0.1388 11 6 2.7373 -3.7989 -1.4988 12 7 1.7215 -3.9324 -2.5459 13 6 2.0952 -4.0783 -3.8326 14 8 3.2724 -4.0994 -4.1235 15 6 1.0503 -4.2150 -4.9099 16 6 1.7257 -4.3643 -6.2488 17 6 1.9275 -3.2735 -7.0375 18 6 2.5502 -3.3889 -8.2784 19 6 2.9737 -4.5988 -8.7378 20 6 2.7825 -5.7454 -7.9506 21 6 3.2017 -7.0152 -8.3908 22 6 2.9863 -8.0852 -7.5699 23 6 2.3577 -7.9027 -6.3399 24 7 1.9646 -6.7196 -5.9350 25 6 2.1496 -5.6304 -6.6878 26 6 2.9713 -3.9709 1.0520 27 6 1.7641 -4.6729 1.6958 28 6 1.2267 -4.8845 0.2705 29 1 -0.4850 0.8400 0.0004 30 1 0.3600 -2.3905 0.0910 31 1 3.3715 -4.6854 -1.4927 32 1 3.3472 -2.9170 -1.6947 33 1 0.7800 -3.9158 -2.3132 34 1 0.4186 -3.3268 -4.9182 35 1 0.4377 -5.0948 -4.7123 36 1 1.6003 -2.3027 -6.6955 37 1 2.6984 -2.5072 -8.8843 38 1 3.4548 -4.6757 -9.7016 39 1 3.6870 -7.1385 -9.3477 40 1 3.2991 -9.0727 -7.8758 41 1 2.1902 -8.7587 -5.7030 42 1 3.7888 -4.6478 0.8037 43 1 3.3031 -3.0864 1.5957 44 1 1.1458 -4.0105 2.3016 45 1 2.0203 -5.6003 2.2079 46 1 0.1503 -4.7377 0.1834 47 1 1.5673 -5.8113 -0.1913 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501986924.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:32 Heat of formation + Delta-G solvation = 48.268508 kcal Electronic energy + Delta-G solvation = -28830.974004 eV Core-core repulsion = 24979.299312 eV Total energy + Delta-G solvation = -3851.674692 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.99714 -39.39870 -38.37723 -37.13134 -34.15648 -33.71489 -33.23442 -31.42938 -30.62062 -30.01442 -28.27867 -26.35410 -25.25207 -24.28366 -23.75743 -23.66363 -21.95528 -21.14065 -19.78825 -18.36324 -18.18335 -17.16303 -17.02885 -16.90436 -16.61390 -15.52227 -15.16970 -14.94379 -14.58536 -14.47558 -14.26854 -14.16712 -13.89650 -13.86870 -13.24904 -13.18695 -13.07479 -12.95070 -12.67794 -12.18033 -11.80794 -11.78965 -11.71683 -11.55398 -11.24487 -11.18487 -10.99312 -10.81833 -10.56926 -10.35211 -10.23368 -10.06369 -9.70818 -9.54880 -9.47347 -9.35854 -8.85921 -8.83240 -8.36916 -8.21783 -7.02138 -5.81242 -3.10654 0.30426 0.75952 1.90149 2.85441 3.19682 3.43042 3.47480 3.49023 3.74285 4.09800 4.25118 4.40912 4.55358 4.59839 4.70453 4.77679 4.96454 5.06017 5.21186 5.23024 5.25404 5.28270 5.31677 5.40473 5.41946 5.50529 5.58652 5.62661 5.74168 5.82163 5.86012 5.94652 6.00487 6.12437 6.18249 6.22876 6.30886 6.36051 6.39105 6.43332 6.45018 6.59985 6.75757 6.79643 6.96345 7.02969 7.14876 7.70985 7.86159 8.11754 8.37922 8.79542 9.48967 10.03042 10.38525 11.40796 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012913 B = 0.003017 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.759563 B = 9279.592734 C =10849.234260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.009 4.009 3 Si 0.904 3.096 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.234 4.234 8 H 0.070 0.930 9 N -0.699 5.699 10 C 0.174 3.826 11 C 0.123 3.877 12 N -0.706 5.706 13 C 0.520 3.480 14 O -0.550 6.550 15 C -0.100 4.100 16 C -0.028 4.028 17 C -0.095 4.095 18 C -0.107 4.107 19 C -0.106 4.106 20 C -0.102 4.102 21 C -0.060 4.060 22 C -0.179 4.179 23 C 0.126 3.874 24 N -0.464 5.464 25 C 0.142 3.858 26 C -0.151 4.151 27 C -0.128 4.128 28 C -0.144 4.144 29 H 0.255 0.745 30 H 0.386 0.614 31 H 0.051 0.949 32 H 0.066 0.934 33 H 0.400 0.600 34 H 0.102 0.898 35 H 0.108 0.892 36 H 0.131 0.869 37 H 0.128 0.872 38 H 0.128 0.872 39 H 0.136 0.864 40 H 0.134 0.866 41 H 0.157 0.843 42 H 0.068 0.932 43 H 0.073 0.927 44 H 0.081 0.919 45 H 0.053 0.947 46 H 0.065 0.935 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.855 -15.477 -15.205 21.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.205 4.205 3 Si 0.735 3.265 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.365 4.365 8 H 0.088 0.912 9 N -0.340 5.340 10 C 0.081 3.919 11 C -0.003 4.003 12 N -0.356 5.356 13 C 0.306 3.694 14 O -0.428 6.428 15 C -0.140 4.140 16 C -0.030 4.030 17 C -0.115 4.115 18 C -0.125 4.125 19 C -0.125 4.125 20 C -0.104 4.104 21 C -0.086 4.086 22 C -0.199 4.199 23 C -0.047 4.047 24 N -0.171 5.171 25 C 0.020 3.980 26 C -0.191 4.191 27 C -0.166 4.166 28 C -0.182 4.182 29 H 0.065 0.935 30 H 0.221 0.779 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.233 0.767 34 H 0.120 0.880 35 H 0.127 0.873 36 H 0.149 0.851 37 H 0.146 0.854 38 H 0.145 0.855 39 H 0.153 0.847 40 H 0.152 0.848 41 H 0.174 0.826 42 H 0.086 0.914 43 H 0.092 0.908 44 H 0.099 0.901 45 H 0.072 0.928 46 H 0.083 0.917 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.362 -15.098 -14.587 21.126 hybrid contribution 0.261 0.923 -0.674 1.172 sum 2.623 -14.176 -15.260 20.993 Atomic orbital electron populations 1.69643 1.05036 1.25800 1.57500 1.24709 0.95461 0.97569 1.02734 0.86317 0.78605 0.83638 0.77943 1.21233 1.21739 1.21259 1.19060 0.91030 0.83670 1.42749 0.91248 1.42051 1.06095 0.99050 1.86789 1.20809 0.92968 0.87379 0.90717 1.21798 0.90546 1.00306 0.87677 1.45717 1.10757 1.73007 1.06081 1.20186 0.89608 0.76337 0.83302 1.90661 1.18851 1.50856 1.82411 1.20578 0.97856 1.05068 0.90476 1.18994 0.97835 0.91068 0.95054 1.20847 0.98117 0.98439 0.94107 1.20889 0.97811 0.97753 0.96011 1.20915 1.00318 0.91878 0.99403 1.18797 1.00929 0.94798 0.95845 1.21423 0.96267 0.91528 0.99398 1.21849 1.01785 1.00060 0.96205 1.22937 0.93001 0.94929 0.93822 1.67983 1.17823 0.98498 1.32806 1.18611 0.96347 0.92639 0.90359 1.23310 0.96383 1.00326 0.99126 1.22632 0.98525 0.99482 0.95948 1.23138 0.99873 0.97902 0.97248 0.93480 0.77928 0.93029 0.91554 0.76651 0.87995 0.87349 0.85103 0.85440 0.85454 0.84652 0.84772 0.82612 0.91377 0.90787 0.90070 0.92789 0.91671 0.90435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.98 13.07 55.49 0.73 -26.26 16 2 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 3 Si 0.90 22.23 29.55 -169.99 -5.02 17.21 16 4 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 6 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.23 -6.20 9.05 -15.06 -0.14 -6.33 16 8 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 9 N -0.70 -16.20 5.19 -46.48 -0.24 -16.44 16 10 C 0.17 3.28 0.80 -131.00 -0.11 3.17 16 11 C 0.12 2.36 5.08 -4.04 -0.02 2.34 16 12 N -0.71 -12.51 5.42 -60.29 -0.33 -12.83 16 13 C 0.52 9.43 7.82 -10.98 -0.09 9.34 16 14 O -0.55 -11.98 16.03 5.56 0.09 -11.89 16 15 C -0.10 -1.44 5.56 -29.03 -0.16 -1.60 16 16 C -0.03 -0.42 4.38 -104.51 -0.46 -0.88 16 17 C -0.10 -1.24 9.57 -39.95 -0.38 -1.62 16 18 C -0.11 -1.17 9.95 -39.92 -0.40 -1.57 16 19 C -0.11 -1.14 9.78 -39.52 -0.39 -1.52 16 20 C -0.10 -1.27 5.74 -106.80 -0.61 -1.88 16 21 C -0.06 -0.58 9.90 -39.22 -0.39 -0.97 16 22 C -0.18 -1.62 10.03 -39.78 -0.40 -2.02 16 23 C 0.13 1.39 11.15 -17.46 -0.19 1.19 16 24 N -0.46 -6.67 9.51 -10.98 -0.10 -6.77 16 25 C 0.14 2.09 6.58 -84.86 -0.56 1.53 16 26 C -0.15 -2.65 7.28 -25.92 -0.19 -2.84 16 27 C -0.13 -2.03 7.99 -25.92 -0.21 -2.24 16 28 C -0.14 -2.26 7.04 -25.91 -0.18 -2.44 16 29 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 30 H 0.39 9.50 7.87 -40.82 -0.32 9.18 16 31 H 0.05 0.96 8.01 -51.93 -0.42 0.54 16 32 H 0.07 1.49 7.80 -51.93 -0.41 1.08 16 33 H 0.40 6.53 8.30 -40.82 -0.34 6.20 16 34 H 0.10 1.28 8.04 -51.93 -0.42 0.86 16 35 H 0.11 1.43 7.71 -51.93 -0.40 1.03 16 36 H 0.13 1.53 8.04 -52.49 -0.42 1.10 16 37 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 38 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 39 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 40 H 0.13 0.77 8.06 -52.48 -0.42 0.34 16 41 H 0.16 1.24 8.06 -52.49 -0.42 0.82 16 42 H 0.07 1.07 8.01 -51.93 -0.42 0.65 16 43 H 0.07 1.45 7.87 -51.93 -0.41 1.04 16 44 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 45 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 46 H 0.06 1.01 8.09 -51.93 -0.42 0.59 16 47 H 0.08 1.11 8.10 -51.93 -0.42 0.68 16 LS Contribution 393.86 15.07 5.94 5.94 Total: -1.00 -33.54 393.86 -10.80 -44.34 By element: Atomic # 1 Polarization: 22.27 SS G_CDS: -6.89 Total: 15.37 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: -4.96 Total: -8.67 kcal Atomic # 7 Polarization: -62.35 SS G_CDS: 0.05 Total: -62.30 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: 0.09 Total: -11.89 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.54 -10.80 -44.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501986924.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.611 kcal (2) G-P(sol) polarization free energy of solvation -33.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds