Wall clock time and date at job start Tue Mar 31 2020 22:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86805 * 119.99806 * 2 1 4 4 H 1.48498 * 109.47190 * 240.00180 * 3 2 1 5 5 H 1.48502 * 109.47376 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46904 * 120.00262 * 3 2 1 7 7 C 1.38807 * 120.00483 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00406 * 179.97438 * 7 2 1 9 9 N 1.36946 * 119.99753 * 359.97438 * 7 2 1 10 10 C 1.46497 * 119.99770 * 173.76777 * 9 7 2 11 11 C 1.53001 * 112.85282 * 294.86555 * 10 9 7 12 12 N 1.46500 * 109.46992 * 292.10372 * 11 10 9 13 13 C 1.34779 * 119.99557 * 180.19260 * 12 11 10 14 14 O 1.21274 * 120.00401 * 0.02562 * 13 12 11 15 15 C 1.50699 * 119.99795 * 180.02562 * 13 12 11 16 16 C 1.50705 * 109.47200 * 180.02562 * 15 13 12 17 17 C 1.36109 * 120.12298 * 264.97818 * 16 15 13 18 18 C 1.39316 * 121.06505 * 179.97438 * 17 16 15 19 19 C 1.36177 * 120.86822 * 0.06573 * 18 17 16 20 20 C 1.40383 * 119.61184 * 359.91138 * 19 18 17 21 21 C 1.40785 * 121.38185 * 179.78442 * 20 19 18 22 22 C 1.36569 * 118.15015 * 179.80560 * 21 20 19 23 23 C 1.39334 * 119.94299 * 0.50307 * 22 21 20 24 24 N 1.31087 * 121.74798 * 359.71458 * 23 22 21 25 25 C 1.33683 * 121.32622 * 0.02562 * 24 23 22 26 26 C 1.53782 * 113.69128 * 66.14059 * 10 9 7 27 27 C 1.53776 * 87.08303 * 89.12354 * 26 10 9 28 28 C 1.53784 * 87.08446 * 25.42936 * 27 26 10 29 29 H 0.96998 * 119.99855 * 359.97438 * 1 2 3 30 30 H 0.96998 * 119.99400 * 353.77269 * 9 7 2 31 31 H 1.09002 * 109.47071 * 172.10555 * 11 10 9 32 32 H 1.08998 * 109.46676 * 52.10092 * 11 10 9 33 33 H 0.96999 * 120.00156 * 0.20153 * 12 11 10 34 34 H 1.09004 * 109.47120 * 60.00145 * 15 13 12 35 35 H 1.09006 * 109.47405 * 299.99987 * 15 13 12 36 36 H 1.08000 * 119.47222 * 0.02562 * 17 16 15 37 37 H 1.08001 * 119.56674 * 180.02562 * 18 17 16 38 38 H 1.08000 * 120.19076 * 179.97438 * 19 18 17 39 39 H 1.08001 * 120.91974 * 0.28056 * 21 20 19 40 40 H 1.08006 * 120.02894 * 180.23133 * 22 21 20 41 41 H 1.07999 * 119.12874 * 179.73685 * 23 22 21 42 42 H 1.08996 * 113.61085 * 203.67547 * 26 10 9 43 43 H 1.08999 * 113.60994 * 334.57319 * 26 10 9 44 44 H 1.09005 * 113.61331 * 270.88514 * 27 26 10 45 45 H 1.08996 * 113.61828 * 139.97969 * 27 26 10 46 46 H 1.08992 * 113.62024 * 220.01704 * 28 27 26 47 47 H 1.09005 * 113.60573 * 89.11530 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7466 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 7 1.3257 -2.3881 -0.0005 10 6 2.0517 -3.6529 -0.1388 11 6 2.7373 -3.7989 -1.4988 12 7 1.7215 -3.9324 -2.5459 13 6 2.0952 -4.0783 -3.8326 14 8 3.2724 -4.0994 -4.1235 15 6 1.0503 -4.2150 -4.9099 16 6 1.7257 -4.3643 -6.2488 17 6 1.9275 -3.2735 -7.0375 18 6 2.5502 -3.3889 -8.2784 19 6 2.9737 -4.5988 -8.7378 20 6 2.7825 -5.7454 -7.9506 21 6 3.2017 -7.0152 -8.3908 22 6 2.9863 -8.0852 -7.5699 23 6 2.3577 -7.9027 -6.3399 24 7 1.9646 -6.7196 -5.9350 25 6 2.1496 -5.6304 -6.6878 26 6 2.9713 -3.9709 1.0520 27 6 1.7641 -4.6729 1.6958 28 6 1.2267 -4.8845 0.2705 29 1 -0.4850 0.8400 0.0004 30 1 0.3600 -2.3905 0.0910 31 1 3.3715 -4.6854 -1.4927 32 1 3.3472 -2.9170 -1.6947 33 1 0.7800 -3.9158 -2.3132 34 1 0.4186 -3.3268 -4.9182 35 1 0.4377 -5.0948 -4.7123 36 1 1.6003 -2.3027 -6.6955 37 1 2.6984 -2.5072 -8.8843 38 1 3.4548 -4.6757 -9.7016 39 1 3.6870 -7.1385 -9.3477 40 1 3.2991 -9.0727 -7.8758 41 1 2.1902 -8.7587 -5.7030 42 1 3.7888 -4.6478 0.8037 43 1 3.3031 -3.0864 1.5957 44 1 1.1458 -4.0105 2.3016 45 1 2.0203 -5.6003 2.2079 46 1 0.1503 -4.7377 0.1834 47 1 1.5673 -5.8113 -0.1913 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501986924.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:31 Heat of formation + Delta-G solvation = 27.022596 kcal Electronic energy + Delta-G solvation = -28831.895296 eV Core-core repulsion = 24979.299312 eV Total energy + Delta-G solvation = -3852.595984 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.87812 -40.84328 -39.80638 -38.01558 -35.30121 -35.18634 -35.00738 -32.38783 -31.89198 -31.44002 -29.55716 -27.67530 -26.73255 -25.67347 -25.07133 -24.49935 -23.29514 -22.28082 -21.13634 -19.72409 -19.17345 -19.11349 -18.13265 -17.87896 -17.72931 -16.99619 -16.60272 -16.27397 -15.92329 -15.68102 -15.53841 -15.30480 -15.08132 -15.03373 -14.82891 -14.50188 -14.23225 -13.93445 -13.80819 -13.71799 -13.12237 -12.98978 -12.90494 -12.82083 -12.66172 -12.61000 -12.50264 -12.21231 -12.13465 -11.94022 -11.60352 -11.49196 -11.43517 -11.01637 -10.87908 -10.69054 -10.37626 -9.92384 -9.68382 -9.11240 -8.98091 -7.93951 -5.20871 -0.51398 -0.08266 1.04784 1.44770 1.46010 1.51564 1.75717 2.01294 2.42243 2.54775 3.18144 3.37695 3.41605 3.55202 3.73887 3.80937 3.82670 3.90679 3.96321 4.02905 4.09041 4.10438 4.16055 4.24428 4.28329 4.39376 4.47435 4.57830 4.63008 4.65954 4.83174 4.87481 4.89617 4.91360 4.99565 5.09282 5.12256 5.15802 5.17515 5.29781 5.41935 5.46668 5.49266 5.53464 5.64234 5.65127 5.70266 5.97346 6.30269 6.68169 7.02834 7.35518 7.36576 8.09787 8.34578 9.28241 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012913 B = 0.003017 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.759563 B = 9279.592734 C =10849.234260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.961 5.961 2 C -0.064 4.064 3 Si 0.957 3.043 4 H -0.288 1.288 5 H -0.294 1.294 6 H -0.281 1.281 7 C -0.224 4.224 8 H 0.063 0.937 9 N -0.704 5.704 10 C 0.160 3.840 11 C 0.133 3.867 12 N -0.703 5.703 13 C 0.518 3.482 14 O -0.589 6.589 15 C -0.089 4.089 16 C -0.064 4.064 17 C -0.106 4.106 18 C -0.120 4.120 19 C -0.098 4.098 20 C -0.126 4.126 21 C -0.060 4.060 22 C -0.176 4.176 23 C 0.117 3.883 24 N -0.504 5.504 25 C 0.112 3.888 26 C -0.150 4.150 27 C -0.119 4.119 28 C -0.126 4.126 29 H 0.250 0.750 30 H 0.378 0.622 31 H 0.061 0.939 32 H 0.026 0.974 33 H 0.407 0.593 34 H 0.115 0.885 35 H 0.117 0.883 36 H 0.133 0.867 37 H 0.154 0.846 38 H 0.163 0.837 39 H 0.172 0.828 40 H 0.173 0.827 41 H 0.180 0.820 42 H 0.091 0.909 43 H 0.047 0.953 44 H 0.063 0.937 45 H 0.085 0.915 46 H 0.068 0.932 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.652 -17.764 -16.755 24.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.611 5.611 2 C -0.257 4.257 3 Si 0.787 3.213 4 H -0.215 1.215 5 H -0.220 1.220 6 H -0.207 1.207 7 C -0.356 4.356 8 H 0.081 0.919 9 N -0.343 5.343 10 C 0.069 3.931 11 C 0.006 3.994 12 N -0.352 5.352 13 C 0.305 3.695 14 O -0.470 6.470 15 C -0.128 4.128 16 C -0.065 4.065 17 C -0.126 4.126 18 C -0.138 4.138 19 C -0.117 4.117 20 C -0.128 4.128 21 C -0.085 4.085 22 C -0.195 4.195 23 C -0.055 4.055 24 N -0.213 5.213 25 C -0.008 4.008 26 C -0.191 4.191 27 C -0.156 4.156 28 C -0.164 4.164 29 H 0.059 0.941 30 H 0.211 0.789 31 H 0.079 0.921 32 H 0.045 0.955 33 H 0.242 0.758 34 H 0.133 0.867 35 H 0.135 0.865 36 H 0.151 0.849 37 H 0.172 0.828 38 H 0.181 0.819 39 H 0.190 0.810 40 H 0.190 0.810 41 H 0.197 0.803 42 H 0.109 0.891 43 H 0.066 0.934 44 H 0.081 0.919 45 H 0.104 0.896 46 H 0.087 0.913 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 3.166 -17.415 -16.128 23.946 hybrid contribution 0.108 1.481 -0.242 1.504 sum 3.274 -15.934 -16.370 23.078 Atomic orbital electron populations 1.69760 1.06005 1.25828 1.59534 1.25315 0.96210 1.00169 1.04034 0.85464 0.77439 0.80601 0.77778 1.21458 1.21979 1.20699 1.19247 0.90892 0.85013 1.40490 0.91878 1.42078 1.05751 0.99806 1.86710 1.21087 0.94232 0.87055 0.90776 1.21600 0.90651 0.98857 0.88245 1.45721 1.10828 1.72693 1.05978 1.20849 0.89849 0.74994 0.83786 1.90624 1.20767 1.52623 1.82995 1.20507 0.96802 1.05932 0.89571 1.19138 0.99852 0.92104 0.95375 1.21091 0.98217 0.98176 0.95073 1.21208 0.97770 0.99236 0.95600 1.21359 0.98947 0.91066 1.00291 1.19195 1.01302 0.96798 0.95523 1.21890 0.95439 0.90403 1.00792 1.22256 1.00441 1.01757 0.95066 1.23548 0.92189 0.94681 0.95103 1.67946 1.19813 0.99513 1.34007 1.18869 0.97488 0.92760 0.91721 1.23331 0.97555 1.00071 0.98093 1.22553 0.96911 1.00192 0.95955 1.23086 0.99656 0.96857 0.96823 0.94112 0.78868 0.92058 0.95522 0.75807 0.86733 0.86461 0.84896 0.82791 0.81925 0.81045 0.80953 0.80266 0.89087 0.93373 0.91858 0.89596 0.91332 0.88073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.80 13.07 21.65 0.28 -56.51 16 2 C -0.06 -3.64 5.50 84.86 0.47 -3.17 16 3 Si 0.96 46.60 29.55 68.60 2.03 48.63 16 4 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 5 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 6 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 7 C -0.22 -12.14 9.05 84.03 0.76 -11.38 16 8 H 0.06 3.44 7.83 -2.91 -0.02 3.42 16 9 N -0.70 -33.14 5.19 -300.96 -1.56 -34.71 16 10 C 0.16 5.99 0.80 4.13 0.00 5.99 16 11 C 0.13 5.18 5.08 86.38 0.44 5.62 16 12 N -0.70 -25.29 5.42 -463.06 -2.51 -27.80 16 13 C 0.52 19.31 7.82 87.66 0.69 19.99 16 14 O -0.59 -26.59 16.03 -3.01 -0.05 -26.64 16 15 C -0.09 -2.63 5.56 29.10 0.16 -2.47 16 16 C -0.06 -1.92 4.38 -19.79 -0.09 -2.01 16 17 C -0.11 -2.81 9.57 22.03 0.21 -2.60 16 18 C -0.12 -2.53 9.95 22.05 0.22 -2.31 16 19 C -0.10 -1.91 9.78 22.31 0.22 -1.69 16 20 C -0.13 -2.98 5.74 -21.28 -0.12 -3.10 16 21 C -0.06 -0.98 9.90 22.50 0.22 -0.76 16 22 C -0.18 -2.67 10.03 22.14 0.22 -2.45 16 23 C 0.12 2.41 11.15 85.07 0.95 3.36 16 24 N -0.50 -14.48 9.51 -188.64 -1.79 -16.28 16 25 C 0.11 3.33 6.58 40.28 0.27 3.60 16 26 C -0.15 -5.14 7.28 31.12 0.23 -4.91 16 27 C -0.12 -3.52 7.99 31.12 0.25 -3.27 16 28 C -0.13 -3.73 7.04 31.12 0.22 -3.51 16 29 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 30 H 0.38 18.93 7.87 -92.71 -0.73 18.20 16 31 H 0.06 2.26 8.01 -2.39 -0.02 2.24 16 32 H 0.03 1.24 7.80 -2.39 -0.02 1.22 16 33 H 0.41 13.40 8.30 -92.71 -0.77 12.64 16 34 H 0.11 2.98 8.04 -2.39 -0.02 2.96 16 35 H 0.12 3.19 7.71 -2.38 -0.02 3.17 16 36 H 0.13 3.24 8.04 -2.91 -0.02 3.21 16 37 H 0.15 2.26 8.06 -2.91 -0.02 2.23 16 38 H 0.16 1.86 8.06 -2.91 -0.02 1.83 16 39 H 0.17 1.46 8.06 -2.91 -0.02 1.43 16 40 H 0.17 1.20 8.06 -2.91 -0.02 1.18 16 41 H 0.18 2.52 8.06 -2.91 -0.02 2.49 16 42 H 0.09 2.69 8.01 -2.39 -0.02 2.67 16 43 H 0.05 1.89 7.87 -2.39 -0.02 1.87 16 44 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 45 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 46 H 0.07 2.01 8.09 -2.39 -0.02 1.99 16 47 H 0.10 2.56 8.10 -2.38 -0.02 2.54 16 Total: -1.00 -75.83 393.86 1.20 -74.62 By element: Atomic # 1 Polarization: 44.26 SS G_CDS: -0.50 Total: 43.75 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: 5.31 Total: -5.07 kcal Atomic # 7 Polarization: -129.71 SS G_CDS: -5.58 Total: -135.30 kcal Atomic # 8 Polarization: -26.59 SS G_CDS: -0.05 Total: -26.64 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Total: -75.83 1.20 -74.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501986924.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.646 kcal (2) G-P(sol) polarization free energy of solvation -75.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds