Wall clock time and date at job start Tue Mar 31 2020 22:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 120.00103 * 2 1 4 4 H 1.48502 * 109.47166 * 239.99672 * 3 2 1 5 5 H 1.48502 * 109.46961 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47031 * 119.99468 * 3 2 1 7 7 C 1.38815 * 119.99819 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99671 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00051 * 359.97438 * 7 2 1 10 10 C 1.46509 * 119.99741 * 179.72283 * 9 7 2 11 11 C 1.53001 * 109.47040 * 174.82740 * 10 9 7 12 12 H 1.09008 * 109.58174 * 308.37217 * 11 10 9 13 13 C 1.53189 * 109.58523 * 187.94797 * 11 10 9 14 14 C 1.53039 * 109.31193 * 185.57597 * 13 11 10 15 15 C 1.53046 * 109.53785 * 61.36036 * 14 13 11 16 16 C 1.53189 * 109.31154 * 298.63738 * 15 14 13 17 17 N 1.46918 * 109.58668 * 68.65261 * 11 10 9 18 18 C 1.34778 * 120.63302 * 353.41963 * 17 11 10 19 19 O 1.21599 * 119.99855 * 5.93366 * 18 17 11 20 20 C 1.47456 * 120.00074 * 185.93456 * 18 17 11 21 21 C 1.38860 * 120.46001 * 49.60174 * 20 18 17 22 22 C 1.38895 * 120.67694 * 180.02562 * 21 20 18 23 23 C 1.36373 * 121.27387 * 359.97438 * 22 21 20 24 24 C 1.40402 * 119.98101 * 0.02562 * 23 22 21 25 25 C 1.40465 * 121.94609 * 179.97438 * 24 23 22 26 26 N 1.31283 * 119.88218 * 180.02562 * 25 24 23 27 27 C 1.32550 * 122.73268 * 359.97438 * 26 25 24 28 28 C 1.36337 * 121.81820 * 359.97438 * 27 26 25 29 29 C 1.40288 * 118.70236 * 359.76183 * 28 27 26 30 30 H 0.96997 * 120.00241 * 0.02562 * 1 2 3 31 31 H 0.96991 * 120.00157 * 0.02562 * 9 7 2 32 32 H 1.08996 * 109.47168 * 294.82976 * 10 9 7 33 33 H 1.09000 * 109.46839 * 54.82978 * 10 9 7 34 34 H 1.09005 * 109.49338 * 305.52530 * 13 11 10 35 35 H 1.08994 * 109.50470 * 65.62253 * 13 11 10 36 36 H 1.08999 * 109.45794 * 301.34190 * 14 13 11 37 37 H 1.08993 * 109.45131 * 181.37586 * 14 13 11 38 38 H 1.08997 * 109.49580 * 178.68349 * 15 14 13 39 39 H 1.09005 * 109.49611 * 58.59004 * 15 14 13 40 40 H 1.09003 * 109.58632 * 294.84308 * 16 15 14 41 41 H 1.09003 * 109.70484 * 174.49472 * 16 15 14 42 42 H 1.08003 * 119.66159 * 359.97438 * 21 20 18 43 43 H 1.08002 * 119.36696 * 180.02562 * 22 21 20 44 44 H 1.07999 * 120.01040 * 180.02562 * 23 22 21 45 45 H 1.08003 * 120.06165 * 0.03534 * 25 24 23 46 46 H 1.07998 * 119.09015 * 180.02562 * 27 26 25 47 47 H 1.07999 * 120.64766 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 2.0581 -3.6568 -0.0040 11 6 1.0696 -4.8171 0.1286 12 1 0.4163 -4.6445 0.9840 13 6 1.8389 -6.1276 0.3222 14 6 0.8536 -7.2986 0.3147 15 6 0.1357 -7.3548 -1.0358 16 6 -0.6528 -6.0582 -1.2447 17 7 0.2625 -4.9187 -1.0949 18 6 0.3602 -3.9847 -2.0616 19 8 1.1973 -3.1068 -1.9764 20 6 -0.5479 -4.0273 -3.2225 21 6 -1.9184 -4.1564 -3.0398 22 6 -2.7779 -4.1976 -4.1302 23 6 -2.3063 -4.1126 -5.4069 24 6 -0.9278 -3.9812 -5.6384 25 6 -0.3973 -3.8908 -6.9359 26 7 0.8988 -3.7694 -7.1057 27 6 1.7533 -3.7261 -6.0933 28 6 1.3370 -3.8051 -4.7974 29 6 -0.0358 -3.9307 -4.5372 30 1 -0.4850 0.8400 -0.0004 31 1 0.3557 -2.3881 0.0016 32 1 2.6092 -3.7541 -0.9393 33 1 2.7562 -3.6769 0.8329 34 1 2.5570 -6.2510 -0.4885 35 1 2.3666 -6.1023 1.2755 36 1 0.1210 -7.1619 1.1100 37 1 1.3958 -8.2302 0.4767 38 1 -0.5487 -8.2030 -1.0489 39 1 0.8699 -7.4668 -1.8337 40 1 -1.4467 -5.9895 -0.5010 41 1 -1.0870 -6.0491 -2.2445 42 1 -2.3200 -4.2263 -2.0397 43 1 -3.8402 -4.2980 -3.9636 44 1 -2.9931 -4.1464 -6.2398 45 1 -1.0545 -3.9210 -7.7924 46 1 2.8083 -3.6245 -6.3006 47 1 2.0498 -3.7675 -3.9869 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001505411532.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:39 Heat of formation + Delta-G solvation = 52.649319 kcal Electronic energy + Delta-G solvation = -30619.777769 eV Core-core repulsion = 26768.293043 eV Total energy + Delta-G solvation = -3851.484726 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.18421 -41.06393 -38.39909 -38.04888 -36.35470 -34.27051 -33.70783 -33.47486 -32.11163 -31.51954 -30.62851 -27.76334 -26.11056 -25.30218 -24.70365 -24.35625 -24.19611 -22.65375 -21.56331 -20.29334 -19.30980 -18.92311 -18.14176 -17.66574 -17.22525 -16.84859 -16.68032 -16.12061 -15.74275 -15.59320 -15.45376 -15.29820 -15.12629 -15.02730 -14.83029 -14.64843 -14.34069 -14.12222 -13.72999 -13.57750 -13.51602 -13.20197 -13.02737 -12.88488 -12.80583 -12.67634 -12.36581 -12.20475 -12.10624 -11.88921 -11.74586 -11.51368 -11.38447 -11.19022 -10.90171 -10.57809 -10.08084 -9.90766 -9.50213 -9.03162 -8.64703 -7.87505 -5.05732 -0.75760 -0.12818 0.73780 1.38880 1.43788 1.48764 1.86426 2.04868 2.20776 2.58103 3.05959 3.43184 3.46411 3.48381 3.67876 3.79943 3.81984 3.85309 3.89089 3.95257 4.05735 4.10097 4.21801 4.31696 4.36886 4.38477 4.46364 4.55566 4.61398 4.72769 4.76242 4.77666 4.85046 4.92111 4.97802 5.02923 5.06810 5.10056 5.12280 5.22064 5.29325 5.34444 5.39101 5.47283 5.50711 5.62433 5.79291 5.84777 6.33789 6.58915 6.93124 7.39588 7.48288 8.19548 8.42776 9.37035 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008194 B = 0.005328 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3416.286346 B = 5253.808038 C = 7184.273174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.083 4.083 3 Si 0.964 3.036 4 H -0.291 1.291 5 H -0.294 1.294 6 H -0.275 1.275 7 C -0.211 4.211 8 H 0.060 0.940 9 N -0.702 5.702 10 C 0.162 3.838 11 C 0.148 3.852 12 H 0.066 0.934 13 C -0.120 4.120 14 C -0.111 4.111 15 C -0.127 4.127 16 C 0.100 3.900 17 N -0.606 5.606 18 C 0.516 3.484 19 O -0.496 6.496 20 C -0.137 4.137 21 C -0.060 4.060 22 C -0.123 4.123 23 C -0.056 4.056 24 C -0.131 4.131 25 C 0.153 3.847 26 N -0.510 5.510 27 C 0.071 3.929 28 C -0.168 4.168 29 C -0.013 4.013 30 H 0.245 0.755 31 H 0.367 0.633 32 H 0.019 0.981 33 H 0.015 0.985 34 H 0.056 0.944 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.102 0.898 39 H 0.053 0.947 40 H 0.080 0.920 41 H 0.089 0.911 42 H 0.137 0.863 43 H 0.172 0.828 44 H 0.184 0.816 45 H 0.209 0.791 46 H 0.163 0.837 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.345 -20.549 -9.088 23.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.274 4.274 3 Si 0.794 3.206 4 H -0.219 1.219 5 H -0.220 1.220 6 H -0.202 1.202 7 C -0.344 4.344 8 H 0.078 0.922 9 N -0.342 5.342 10 C 0.036 3.964 11 C 0.044 3.956 12 H 0.084 0.916 13 C -0.158 4.158 14 C -0.149 4.149 15 C -0.165 4.165 16 C -0.022 4.022 17 N -0.342 5.342 18 C 0.303 3.697 19 O -0.369 6.369 20 C -0.140 4.140 21 C -0.080 4.080 22 C -0.141 4.141 23 C -0.075 4.075 24 C -0.133 4.133 25 C -0.018 4.018 26 N -0.219 5.219 27 C -0.071 4.071 28 C -0.188 4.188 29 C -0.018 4.018 30 H 0.053 0.947 31 H 0.199 0.801 32 H 0.037 0.963 33 H 0.033 0.967 34 H 0.075 0.925 35 H 0.102 0.898 36 H 0.092 0.908 37 H 0.103 0.897 38 H 0.121 0.879 39 H 0.072 0.928 40 H 0.098 0.902 41 H 0.107 0.893 42 H 0.155 0.845 43 H 0.189 0.811 44 H 0.201 0.799 45 H 0.226 0.774 46 H 0.180 0.820 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -7.189 -19.894 -9.803 23.314 hybrid contribution 0.363 1.555 1.199 1.996 sum -6.826 -18.339 -8.604 21.377 Atomic orbital electron populations 1.69797 1.06257 1.25180 1.61227 1.25339 0.96360 1.00334 1.05351 0.85329 0.77263 0.80191 0.77768 1.21851 1.21972 1.20159 1.19416 0.90715 0.85857 1.38418 0.92228 1.42297 1.04687 1.00554 1.86680 1.20930 0.93884 0.84976 0.96616 1.21393 0.92310 0.95640 0.86225 0.91587 1.21862 0.98283 0.93130 1.02560 1.21494 0.98188 0.97634 0.97566 1.21898 0.99929 0.97036 0.97683 1.22073 0.92055 0.84783 1.03241 1.47886 1.43380 1.25030 1.17926 1.18602 0.85545 0.82049 0.83527 1.91192 1.35248 1.35150 1.75359 1.20040 0.95401 1.06234 0.92343 1.21741 0.91107 0.93802 1.01303 1.21259 1.01616 0.99821 0.91390 1.21604 0.92599 0.94136 0.99178 1.19304 0.95732 1.04331 0.93936 1.23942 0.91418 0.90699 0.95768 1.67487 1.05058 1.13656 1.35665 1.22337 1.00402 0.96608 0.87766 1.21949 0.95942 1.01986 0.98907 1.18141 0.93836 0.96971 0.92896 0.94675 0.80136 0.96338 0.96740 0.92548 0.89810 0.90844 0.89724 0.87916 0.92830 0.90200 0.89257 0.84480 0.81051 0.79919 0.77437 0.81981 0.86701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -64.15 13.06 21.65 0.28 -63.87 16 2 C -0.08 -5.23 5.50 84.86 0.47 -4.76 16 3 Si 0.96 51.01 29.55 68.60 2.03 53.04 16 4 H -0.29 -15.33 7.11 99.48 0.71 -14.62 16 5 H -0.29 -15.39 7.11 99.48 0.71 -14.68 16 6 H -0.28 -13.81 7.11 99.48 0.71 -13.10 16 7 C -0.21 -13.15 9.70 84.03 0.82 -12.33 16 8 H 0.06 3.66 7.83 -2.91 -0.02 3.64 16 9 N -0.70 -39.45 3.22 -343.43 -1.10 -40.56 16 10 C 0.16 7.38 4.87 86.38 0.42 7.81 16 11 C 0.15 5.02 2.93 44.98 0.13 5.15 16 12 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 13 C -0.12 -2.97 5.36 30.67 0.16 -2.80 16 14 C -0.11 -1.94 5.88 30.62 0.18 -1.76 16 15 C -0.13 -2.18 6.08 30.67 0.19 -1.99 16 16 C 0.10 2.18 5.33 86.36 0.46 2.64 16 17 N -0.61 -19.66 2.97 -798.85 -2.37 -22.04 16 18 C 0.52 20.82 6.00 86.67 0.52 21.34 16 19 O -0.50 -25.63 9.23 -4.03 -0.04 -25.67 16 20 C -0.14 -4.67 4.80 -19.91 -0.10 -4.77 16 21 C -0.06 -1.54 7.59 22.58 0.17 -1.37 16 22 C -0.12 -2.20 9.92 21.99 0.22 -1.98 16 23 C -0.06 -0.94 9.79 22.36 0.22 -0.72 16 24 C -0.13 -3.27 5.74 -21.33 -0.12 -3.40 16 25 C 0.15 3.44 11.05 85.32 0.94 4.38 16 26 N -0.51 -14.53 10.30 -195.39 -2.01 -16.54 16 27 C 0.07 2.21 11.07 84.14 0.93 3.14 16 28 C -0.17 -6.05 9.26 22.32 0.21 -5.84 16 29 C -0.01 -0.43 5.76 -21.11 -0.12 -0.55 16 30 H 0.24 15.70 8.31 -92.71 -0.77 14.93 16 31 H 0.37 21.94 6.98 -92.72 -0.65 21.29 16 32 H 0.02 0.94 6.36 -2.39 -0.02 0.93 16 33 H 0.01 0.66 8.13 -2.39 -0.02 0.65 16 34 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 35 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 40 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.09 1.85 5.21 -2.39 -0.01 1.84 16 42 H 0.14 3.30 7.43 -2.91 -0.02 3.27 16 43 H 0.17 1.68 8.06 -2.91 -0.02 1.66 16 44 H 0.18 1.28 8.06 -2.91 -0.02 1.26 16 45 H 0.21 2.51 8.06 -2.91 -0.02 2.48 16 46 H 0.16 4.40 8.06 -2.91 -0.02 4.38 16 47 H 0.11 4.75 6.41 -2.91 -0.02 4.73 16 Total: -1.00 -85.99 370.31 2.82 -83.17 By element: Atomic # 1 Polarization: 29.93 SS G_CDS: 0.34 Total: 30.28 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: 5.70 Total: 2.18 kcal Atomic # 7 Polarization: -137.80 SS G_CDS: -5.21 Total: -143.00 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: -0.04 Total: -25.67 kcal Atomic # 14 Polarization: 51.01 SS G_CDS: 2.03 Total: 53.04 kcal Total: -85.99 2.82 -83.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505411532.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.823 kcal (2) G-P(sol) polarization free energy of solvation -85.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds