Wall clock time and date at job start Tue Mar 31 2020 22:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99753 * 2 1 4 4 H 1.48507 * 109.47059 * 270.00084 * 3 2 1 5 5 H 1.48497 * 109.47504 * 29.99882 * 3 2 1 6 6 H 1.48507 * 109.47165 * 150.00288 * 3 2 1 7 7 C 1.38809 * 120.00211 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00142 * 359.97438 * 7 2 1 9 9 N 1.36943 * 120.00114 * 179.97438 * 7 2 1 10 10 C 1.46490 * 119.99858 * 179.72511 * 9 7 2 11 11 C 1.53006 * 109.47314 * 174.81210 * 10 9 7 12 12 H 1.08997 * 109.58408 * 308.56929 * 11 10 9 13 13 C 1.53187 * 109.58915 * 188.27931 * 11 10 9 14 14 C 1.53039 * 109.31239 * 185.57812 * 13 11 10 15 15 C 1.53034 * 109.53838 * 61.36644 * 14 13 11 16 16 C 1.53188 * 109.31668 * 298.63721 * 15 14 13 17 17 N 1.46931 * 109.58327 * 68.84848 * 11 10 9 18 18 C 1.34778 * 120.63040 * 353.39904 * 17 11 10 19 19 O 1.21536 * 119.99902 * 5.91249 * 18 17 11 20 20 C 1.47903 * 119.99570 * 185.91145 * 18 17 11 21 21 C 1.38897 * 121.11802 * 48.79827 * 20 18 17 22 22 C 1.39263 * 119.58266 * 179.97438 * 21 20 18 23 23 N 1.30991 * 121.88407 * 0.02562 * 22 21 20 24 24 C 1.33533 * 121.82862 * 359.97438 * 23 22 21 25 25 C 1.40716 * 120.97257 * 179.97438 * 24 23 22 26 26 C 1.36063 * 119.74254 * 180.02562 * 25 24 23 27 27 C 1.39348 * 121.05328 * 0.02562 * 26 25 24 28 28 C 1.36248 * 120.84167 * 359.97438 * 27 26 25 29 29 C 1.40108 * 119.63928 * 359.72284 * 28 27 26 30 30 H 0.97004 * 119.99919 * 359.97438 * 1 2 3 31 31 H 0.97001 * 119.99494 * 359.97438 * 9 7 2 32 32 H 1.09005 * 109.47354 * 294.80772 * 10 9 7 33 33 H 1.09001 * 109.47945 * 54.81349 * 10 9 7 34 34 H 1.09002 * 109.50046 * 305.53154 * 13 11 10 35 35 H 1.09000 * 109.49798 * 65.59585 * 13 11 10 36 36 H 1.08999 * 109.46449 * 181.38982 * 14 13 11 37 37 H 1.09009 * 109.46125 * 301.35983 * 14 13 11 38 38 H 1.09003 * 109.49702 * 58.59124 * 15 14 13 39 39 H 1.09007 * 109.50012 * 178.68401 * 15 14 13 40 40 H 1.08998 * 109.59459 * 174.42444 * 16 15 14 41 41 H 1.09000 * 109.58593 * 294.70673 * 16 15 14 42 42 H 1.08005 * 120.20362 * 0.02562 * 21 20 18 43 43 H 1.07999 * 119.05548 * 180.02562 * 22 21 20 44 44 H 1.08000 * 120.13348 * 359.97438 * 25 24 23 45 45 H 1.08000 * 119.47271 * 180.02562 * 26 25 24 46 46 H 1.07999 * 119.58356 * 179.97438 * 27 26 25 47 47 H 1.07996 * 120.18059 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3797 -1.2021 -0.0011 10 6 4.1121 -2.4707 0.0045 11 6 5.6113 -2.1947 -0.1278 12 1 5.7883 -1.5399 -0.9810 13 6 6.3608 -3.5154 -0.3298 14 6 7.8677 -3.2485 -0.3220 15 6 8.2767 -2.6631 1.0315 16 6 7.5490 -1.3328 1.2491 17 7 6.1035 -1.5510 1.0978 18 6 5.2462 -1.1713 2.0660 19 8 4.0678 -1.4558 1.9799 20 6 5.7396 -0.4085 3.2331 21 6 6.5521 0.7062 3.0707 22 6 6.9981 1.4011 4.1921 23 7 6.6742 1.0347 5.4073 24 6 5.8971 -0.0262 5.6393 25 6 5.5607 -0.4041 6.9524 26 6 4.7675 -1.4899 7.1601 27 6 4.2799 -2.2390 6.0909 28 6 4.5847 -1.9030 4.8062 29 6 5.3938 -0.7871 4.5551 30 1 -0.4850 0.8401 0.0004 31 1 3.8646 -0.3620 -0.0014 32 1 3.9208 -2.9967 0.9398 33 1 3.7807 -3.0854 -0.8325 34 1 6.1090 -4.2037 0.4770 35 1 6.0735 -3.9543 -1.2853 36 1 8.4029 -4.1830 -0.4901 37 1 8.1153 -2.5408 -1.1132 38 1 8.0070 -3.3594 1.8256 39 1 9.3537 -2.4950 1.0448 40 1 7.7595 -0.9606 2.2517 41 1 7.8879 -0.6059 0.5109 42 1 6.8355 1.0325 2.0809 43 1 7.6292 2.2670 4.0560 44 1 5.9314 0.1649 7.7922 45 1 4.5117 -1.7759 8.1696 46 1 3.6525 -3.0967 6.2831 47 1 4.2006 -2.4908 3.9856 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566942708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:16 Heat of formation + Delta-G solvation = 80.640748 kcal Electronic energy + Delta-G solvation = -30756.645564 eV Core-core repulsion = 26906.374638 eV Total energy + Delta-G solvation = -3850.270926 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.19745 -39.92936 -37.17425 -37.08001 -34.94653 -33.43644 -32.58730 -31.94452 -30.60291 -30.30306 -29.92721 -26.68048 -25.04702 -24.32893 -23.62477 -22.99284 -22.38368 -21.29699 -20.60960 -19.30821 -18.26422 -17.57949 -17.30045 -16.77917 -15.75877 -15.72486 -15.16746 -14.73245 -14.65787 -14.41884 -14.35208 -14.19236 -13.98226 -13.90928 -13.70918 -13.36803 -13.25084 -12.86716 -12.64262 -12.45727 -12.36368 -11.93678 -11.80415 -11.59608 -11.39819 -11.33221 -11.14052 -10.94639 -10.81159 -10.75786 -10.40355 -10.29862 -10.05467 -9.75742 -9.45996 -8.84913 -8.81327 -8.60304 -8.31736 -8.22121 -6.89021 -5.62755 -2.88235 0.20959 0.76970 1.81653 2.84329 3.02804 3.18852 3.43820 3.46745 3.51533 4.08408 4.20723 4.40152 4.63058 4.69088 4.70838 4.71769 4.77798 4.83291 4.84501 4.97343 5.08363 5.15898 5.24541 5.29641 5.33787 5.45039 5.47739 5.58524 5.62294 5.68003 5.70279 5.78357 5.83808 5.86387 5.95645 5.96358 5.99542 6.03120 6.07427 6.28587 6.29851 6.44796 6.47771 6.50074 6.74806 6.81214 7.07487 7.63245 7.82504 8.12528 8.53467 8.57817 9.35581 10.08836 10.28611 11.56751 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008430 B = 0.005703 C = 0.004310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3320.592384 B = 4908.884696 C = 6494.549320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.002 4.002 3 Si 0.882 3.118 4 H -0.288 1.288 5 H -0.294 1.294 6 H -0.282 1.282 7 C -0.211 4.211 8 H 0.088 0.912 9 N -0.721 5.721 10 C 0.163 3.837 11 C 0.139 3.861 12 H 0.071 0.929 13 C -0.127 4.127 14 C -0.118 4.118 15 C -0.133 4.133 16 C 0.104 3.896 17 N -0.609 5.609 18 C 0.510 3.490 19 O -0.428 6.428 20 C -0.042 4.042 21 C -0.158 4.158 22 C 0.129 3.871 23 N -0.472 5.472 24 C 0.128 3.872 25 C -0.102 4.102 26 C -0.096 4.096 27 C -0.120 4.120 28 C -0.080 4.080 29 C -0.072 4.072 30 H 0.256 0.744 31 H 0.355 0.645 32 H 0.048 0.952 33 H 0.028 0.972 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.083 0.917 41 H 0.065 0.935 42 H 0.140 0.860 43 H 0.162 0.838 44 H 0.134 0.866 45 H 0.129 0.871 46 H 0.129 0.871 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.133 -4.734 8.046 23.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.196 4.196 3 Si 0.714 3.286 4 H -0.215 1.215 5 H -0.220 1.220 6 H -0.209 1.209 7 C -0.341 4.341 8 H 0.105 0.895 9 N -0.365 5.365 10 C 0.036 3.964 11 C 0.036 3.964 12 H 0.089 0.911 13 C -0.166 4.166 14 C -0.155 4.155 15 C -0.172 4.172 16 C -0.019 4.019 17 N -0.347 5.347 18 C 0.295 3.705 19 O -0.295 6.295 20 C -0.054 4.054 21 C -0.179 4.179 22 C -0.043 4.043 23 N -0.180 5.180 24 C 0.006 3.994 25 C -0.120 4.120 26 C -0.116 4.116 27 C -0.138 4.138 28 C -0.098 4.098 29 C -0.074 4.074 30 H 0.066 0.934 31 H 0.188 0.812 32 H 0.066 0.934 33 H 0.046 0.954 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.101 0.899 41 H 0.084 0.916 42 H 0.158 0.842 43 H 0.179 0.821 44 H 0.152 0.848 45 H 0.147 0.853 46 H 0.147 0.853 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 20.440 -4.570 8.780 22.711 hybrid contribution 0.336 1.082 -0.730 1.348 sum 20.777 -3.488 8.050 22.553 Atomic orbital electron populations 1.69691 1.04975 1.25360 1.58871 1.24564 0.95119 0.96800 1.03116 0.86558 0.79227 0.85615 0.77220 1.21531 1.22033 1.20879 1.19007 0.80709 0.94403 1.39985 0.89455 1.42672 1.03902 1.01719 1.88177 1.20904 0.86162 0.90256 0.99060 1.21608 0.95990 0.93154 0.85651 0.91105 1.21898 0.94685 0.97235 1.02738 1.21504 0.96104 1.00884 0.97046 1.21907 0.99719 0.97230 0.98319 1.21809 0.80460 0.97245 1.02369 1.47790 1.06106 1.61978 1.18816 1.18139 0.86580 0.82910 0.82918 1.91252 1.14501 1.50206 1.73591 1.20670 0.94890 0.96067 0.93725 1.22392 0.98369 0.96043 1.01068 1.22830 0.96347 0.98013 0.87081 1.67780 1.12208 1.13727 1.24309 1.18826 0.95298 0.91810 0.93439 1.20746 0.99066 0.97525 0.94696 1.20933 0.96481 0.94756 0.99454 1.20991 1.00060 1.00389 0.92374 1.21258 0.95182 0.95256 0.98130 1.18646 0.99245 0.97371 0.92161 0.93395 0.81206 0.93427 0.95442 0.91334 0.90530 0.91808 0.91812 0.91572 0.91025 0.89905 0.91640 0.84209 0.82111 0.84779 0.85306 0.85332 0.84135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -30.94 13.97 55.49 0.78 -30.16 16 2 C 0.00 -0.05 5.50 -17.43 -0.10 -0.14 16 3 Si 0.88 23.77 27.73 -169.99 -4.71 19.06 16 4 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 5 H -0.29 -8.07 7.11 56.52 0.40 -7.67 16 6 H -0.28 -7.33 6.52 56.52 0.37 -6.96 16 7 C -0.21 -6.24 10.19 -15.06 -0.15 -6.40 16 8 H 0.09 2.78 8.06 -52.49 -0.42 2.35 16 9 N -0.72 -17.88 3.02 -59.91 -0.18 -18.06 16 10 C 0.16 3.26 4.87 -4.04 -0.02 3.24 16 11 C 0.14 2.09 2.93 -67.60 -0.20 1.90 16 12 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 13 C -0.13 -1.45 5.37 -26.61 -0.14 -1.59 16 14 C -0.12 -1.06 5.88 -26.69 -0.16 -1.22 16 15 C -0.13 -1.19 6.08 -26.62 -0.16 -1.35 16 16 C 0.10 1.11 5.34 -3.69 -0.02 1.09 16 17 N -0.61 -8.93 2.98 -166.28 -0.50 -9.43 16 18 C 0.51 9.14 6.07 -12.30 -0.07 9.07 16 19 O -0.43 -9.58 9.20 5.33 0.05 -9.53 16 20 C -0.04 -0.68 4.84 -104.34 -0.51 -1.18 16 21 C -0.16 -2.12 7.69 -38.96 -0.30 -2.42 16 22 C 0.13 1.59 11.14 -17.53 -0.20 1.40 16 23 N -0.47 -6.81 10.30 -11.01 -0.11 -6.92 16 24 C 0.13 1.93 6.61 -84.87 -0.56 1.37 16 25 C -0.10 -1.29 9.98 -39.43 -0.39 -1.68 16 26 C -0.10 -1.09 9.94 -39.95 -0.40 -1.49 16 27 C -0.12 -1.54 9.96 -39.88 -0.40 -1.94 16 28 C -0.08 -1.25 9.21 -39.60 -0.36 -1.61 16 29 C -0.07 -1.16 5.76 -106.52 -0.61 -1.78 16 30 H 0.26 8.07 8.31 -40.82 -0.34 7.73 16 31 H 0.36 8.84 4.86 -40.82 -0.20 8.65 16 32 H 0.05 1.03 6.35 -51.93 -0.33 0.70 16 33 H 0.03 0.55 8.13 -51.93 -0.42 0.13 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.08 0.86 5.20 -51.93 -0.27 0.59 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.14 1.60 7.44 -52.48 -0.39 1.21 16 43 H 0.16 1.38 8.06 -52.49 -0.42 0.95 16 44 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 45 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 46 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 47 H 0.14 2.40 6.31 -52.49 -0.33 2.07 16 LS Contribution 367.33 15.07 5.54 5.54 Total: -1.00 -36.50 367.33 -10.50 -47.00 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -6.61 Total: 7.26 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: -4.75 Total: -4.75 kcal Atomic # 7 Polarization: -64.56 SS G_CDS: -0.01 Total: -64.57 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.05 Total: -9.53 kcal Atomic # 14 Polarization: 23.77 SS G_CDS: -4.71 Total: 19.06 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.50 -10.50 -47.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566942708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.638 kcal (2) G-P(sol) polarization free energy of solvation -36.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds