Wall clock time and date at job start Tue Mar 31 2020 22:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99753 * 2 1 4 4 H 1.48507 * 109.47059 * 270.00084 * 3 2 1 5 5 H 1.48497 * 109.47504 * 29.99882 * 3 2 1 6 6 H 1.48507 * 109.47165 * 150.00288 * 3 2 1 7 7 C 1.38809 * 120.00211 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00142 * 359.97438 * 7 2 1 9 9 N 1.36943 * 120.00114 * 179.97438 * 7 2 1 10 10 C 1.46490 * 119.99858 * 179.72511 * 9 7 2 11 11 C 1.53006 * 109.47314 * 174.81210 * 10 9 7 12 12 H 1.08997 * 109.58408 * 308.56929 * 11 10 9 13 13 C 1.53187 * 109.58915 * 188.27931 * 11 10 9 14 14 C 1.53039 * 109.31239 * 185.57812 * 13 11 10 15 15 C 1.53034 * 109.53838 * 61.36644 * 14 13 11 16 16 C 1.53188 * 109.31668 * 298.63721 * 15 14 13 17 17 N 1.46931 * 109.58327 * 68.84848 * 11 10 9 18 18 C 1.34778 * 120.63040 * 353.39904 * 17 11 10 19 19 O 1.21536 * 119.99902 * 5.91249 * 18 17 11 20 20 C 1.47903 * 119.99570 * 185.91145 * 18 17 11 21 21 C 1.38897 * 121.11802 * 48.79827 * 20 18 17 22 22 C 1.39263 * 119.58266 * 179.97438 * 21 20 18 23 23 N 1.30991 * 121.88407 * 0.02562 * 22 21 20 24 24 C 1.33533 * 121.82862 * 359.97438 * 23 22 21 25 25 C 1.40716 * 120.97257 * 179.97438 * 24 23 22 26 26 C 1.36063 * 119.74254 * 180.02562 * 25 24 23 27 27 C 1.39348 * 121.05328 * 0.02562 * 26 25 24 28 28 C 1.36248 * 120.84167 * 359.97438 * 27 26 25 29 29 C 1.40108 * 119.63928 * 359.72284 * 28 27 26 30 30 H 0.97004 * 119.99919 * 359.97438 * 1 2 3 31 31 H 0.97001 * 119.99494 * 359.97438 * 9 7 2 32 32 H 1.09005 * 109.47354 * 294.80772 * 10 9 7 33 33 H 1.09001 * 109.47945 * 54.81349 * 10 9 7 34 34 H 1.09002 * 109.50046 * 305.53154 * 13 11 10 35 35 H 1.09000 * 109.49798 * 65.59585 * 13 11 10 36 36 H 1.08999 * 109.46449 * 181.38982 * 14 13 11 37 37 H 1.09009 * 109.46125 * 301.35983 * 14 13 11 38 38 H 1.09003 * 109.49702 * 58.59124 * 15 14 13 39 39 H 1.09007 * 109.50012 * 178.68401 * 15 14 13 40 40 H 1.08998 * 109.59459 * 174.42444 * 16 15 14 41 41 H 1.09000 * 109.58593 * 294.70673 * 16 15 14 42 42 H 1.08005 * 120.20362 * 0.02562 * 21 20 18 43 43 H 1.07999 * 119.05548 * 180.02562 * 22 21 20 44 44 H 1.08000 * 120.13348 * 359.97438 * 25 24 23 45 45 H 1.08000 * 119.47271 * 180.02562 * 26 25 24 46 46 H 1.07999 * 119.58356 * 179.97438 * 27 26 25 47 47 H 1.07996 * 120.18059 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3797 -1.2021 -0.0011 10 6 4.1121 -2.4707 0.0045 11 6 5.6113 -2.1947 -0.1278 12 1 5.7883 -1.5399 -0.9810 13 6 6.3608 -3.5154 -0.3298 14 6 7.8677 -3.2485 -0.3220 15 6 8.2767 -2.6631 1.0315 16 6 7.5490 -1.3328 1.2491 17 7 6.1035 -1.5510 1.0978 18 6 5.2462 -1.1713 2.0660 19 8 4.0678 -1.4558 1.9799 20 6 5.7396 -0.4085 3.2331 21 6 6.5521 0.7062 3.0707 22 6 6.9981 1.4011 4.1921 23 7 6.6742 1.0347 5.4073 24 6 5.8971 -0.0262 5.6393 25 6 5.5607 -0.4041 6.9524 26 6 4.7675 -1.4899 7.1601 27 6 4.2799 -2.2390 6.0909 28 6 4.5847 -1.9030 4.8062 29 6 5.3938 -0.7871 4.5551 30 1 -0.4850 0.8401 0.0004 31 1 3.8646 -0.3620 -0.0014 32 1 3.9208 -2.9967 0.9398 33 1 3.7807 -3.0854 -0.8325 34 1 6.1090 -4.2037 0.4770 35 1 6.0735 -3.9543 -1.2853 36 1 8.4029 -4.1830 -0.4901 37 1 8.1153 -2.5408 -1.1132 38 1 8.0070 -3.3594 1.8256 39 1 9.3537 -2.4950 1.0448 40 1 7.7595 -0.9606 2.2517 41 1 7.8879 -0.6059 0.5109 42 1 6.8355 1.0325 2.0809 43 1 7.6292 2.2670 4.0560 44 1 5.9314 0.1649 7.7922 45 1 4.5117 -1.7759 8.1696 46 1 3.6525 -3.0967 6.2831 47 1 4.2006 -2.4908 3.9856 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566942708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:16 Heat of formation + Delta-G solvation = 56.741220 kcal Electronic energy + Delta-G solvation = -30757.681925 eV Core-core repulsion = 26906.374638 eV Total energy + Delta-G solvation = -3851.307287 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.33888 -41.10224 -38.33645 -38.10466 -36.66657 -34.79933 -33.79464 -33.49303 -32.01205 -31.59168 -30.97115 -28.07907 -26.41462 -25.41879 -24.68098 -24.12353 -23.97700 -22.72200 -21.64418 -20.49133 -19.75721 -19.07959 -18.44489 -17.97615 -16.96251 -16.86694 -16.70810 -16.16516 -15.82770 -15.66906 -15.52200 -15.40709 -15.17007 -15.03890 -14.88458 -14.63008 -14.56640 -14.20553 -14.06070 -13.83800 -13.68929 -13.43292 -12.92973 -12.88142 -12.74999 -12.59628 -12.37264 -12.30772 -12.08462 -11.89469 -11.80112 -11.65729 -11.50600 -11.34890 -11.02897 -10.85201 -10.01122 -9.83011 -9.66547 -9.29956 -8.95827 -7.99289 -5.22271 -0.86550 -0.26221 0.71306 1.24022 1.31233 1.36705 1.73840 1.86013 2.00800 2.47126 3.01384 3.22309 3.31950 3.34690 3.60963 3.62059 3.67838 3.81842 3.83662 3.91026 4.05040 4.11867 4.16964 4.24694 4.28222 4.32159 4.36463 4.46861 4.52129 4.58761 4.68248 4.79659 4.82691 4.92149 4.98442 4.99538 5.02824 5.07187 5.11260 5.21939 5.26799 5.30413 5.43249 5.44444 5.48152 5.70451 5.76801 5.81840 6.23658 6.40773 6.77912 7.12178 7.25770 7.90893 8.08987 9.24224 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008430 B = 0.005703 C = 0.004310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3320.592384 B = 4908.884696 C = 6494.549320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.993 5.993 2 C -0.075 4.075 3 Si 0.954 3.046 4 H -0.272 1.272 5 H -0.302 1.302 6 H -0.269 1.269 7 C -0.193 4.193 8 H 0.048 0.952 9 N -0.721 5.721 10 C 0.164 3.836 11 C 0.144 3.856 12 H 0.081 0.919 13 C -0.121 4.121 14 C -0.111 4.111 15 C -0.129 4.129 16 C 0.097 3.903 17 N -0.603 5.603 18 C 0.516 3.484 19 O -0.492 6.492 20 C -0.074 4.074 21 C -0.144 4.144 22 C 0.132 3.868 23 N -0.479 5.479 24 C 0.107 3.893 25 C -0.103 4.103 26 C -0.090 4.090 27 C -0.112 4.112 28 C -0.115 4.115 29 C -0.092 4.092 30 H 0.252 0.748 31 H 0.357 0.643 32 H 0.025 0.975 33 H 0.025 0.975 34 H 0.056 0.944 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.052 0.948 39 H 0.102 0.898 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.163 0.837 43 H 0.206 0.794 44 H 0.158 0.842 45 H 0.169 0.831 46 H 0.147 0.853 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.790 -3.363 8.899 27.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.646 5.646 2 C -0.264 4.264 3 Si 0.784 3.216 4 H -0.198 1.198 5 H -0.229 1.229 6 H -0.195 1.195 7 C -0.325 4.325 8 H 0.066 0.934 9 N -0.365 5.365 10 C 0.038 3.962 11 C 0.041 3.959 12 H 0.099 0.901 13 C -0.159 4.159 14 C -0.149 4.149 15 C -0.167 4.167 16 C -0.024 4.024 17 N -0.339 5.339 18 C 0.302 3.698 19 O -0.365 6.365 20 C -0.086 4.086 21 C -0.164 4.164 22 C -0.040 4.040 23 N -0.187 5.187 24 C -0.014 4.014 25 C -0.121 4.121 26 C -0.110 4.110 27 C -0.130 4.130 28 C -0.134 4.134 29 C -0.094 4.094 30 H 0.061 0.939 31 H 0.189 0.811 32 H 0.043 0.957 33 H 0.042 0.958 34 H 0.075 0.925 35 H 0.105 0.895 36 H 0.102 0.898 37 H 0.096 0.904 38 H 0.071 0.929 39 H 0.121 0.879 40 H 0.104 0.896 41 H 0.109 0.891 42 H 0.181 0.819 43 H 0.223 0.777 44 H 0.176 0.824 45 H 0.187 0.813 46 H 0.165 0.835 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 25.215 -3.239 9.627 27.184 hybrid contribution -0.992 0.511 -0.847 1.401 sum 24.223 -2.728 8.780 25.909 Atomic orbital electron populations 1.69884 1.06886 1.25944 1.61908 1.25328 0.96029 1.00672 1.04396 0.85393 0.78004 0.80393 0.77859 1.19784 1.22947 1.19480 1.18944 0.83020 0.92818 1.37748 0.93432 1.42539 1.02029 1.03379 1.88560 1.20933 0.89572 0.88226 0.97491 1.21528 0.92769 0.95492 0.86097 0.90150 1.21871 0.96523 0.94693 1.02854 1.21496 0.93598 1.02323 0.97466 1.21903 1.01231 0.95725 0.97814 1.22162 0.77663 0.99131 1.03467 1.47971 1.07805 1.60477 1.17693 1.18583 0.86197 0.81693 0.83363 1.91235 1.17010 1.52834 1.75400 1.20669 0.97069 0.97742 0.93084 1.22715 0.96496 0.94496 1.02701 1.23528 0.95878 0.98577 0.85984 1.67866 1.12116 1.13382 1.25359 1.19163 0.95930 0.92212 0.94062 1.21130 0.98671 0.97828 0.94460 1.21323 0.95249 0.93742 1.00663 1.21323 0.99176 1.00753 0.91775 1.21165 0.97329 0.96253 0.98647 1.18838 0.99840 0.97899 0.92868 0.93876 0.81068 0.95747 0.95759 0.92525 0.89466 0.89832 0.90438 0.92905 0.87922 0.89560 0.89124 0.81925 0.77748 0.82414 0.81319 0.83485 0.87115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -68.78 13.97 21.65 0.30 -68.48 16 2 C -0.07 -4.81 5.50 84.86 0.47 -4.34 16 3 Si 0.95 50.66 27.73 68.60 1.90 52.57 16 4 H -0.27 -13.57 7.11 99.48 0.71 -12.86 16 5 H -0.30 -16.33 7.11 99.48 0.71 -15.62 16 6 H -0.27 -13.46 6.52 99.48 0.65 -12.81 16 7 C -0.19 -12.13 10.19 84.03 0.86 -11.28 16 8 H 0.05 3.28 8.06 -2.91 -0.02 3.26 16 9 N -0.72 -37.12 3.02 -343.46 -1.04 -38.16 16 10 C 0.16 6.86 4.87 86.38 0.42 7.28 16 11 C 0.14 4.25 2.93 44.97 0.13 4.38 16 12 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 13 C -0.12 -2.58 5.37 30.67 0.16 -2.42 16 14 C -0.11 -1.60 5.88 30.62 0.18 -1.42 16 15 C -0.13 -1.84 6.08 30.67 0.19 -1.66 16 16 C 0.10 1.77 5.34 86.35 0.46 2.23 16 17 N -0.60 -17.15 2.98 -798.27 -2.38 -19.52 16 18 C 0.52 18.89 6.07 86.80 0.53 19.41 16 19 O -0.49 -23.43 9.20 -3.83 -0.04 -23.46 16 20 C -0.07 -2.39 4.84 -19.68 -0.10 -2.49 16 21 C -0.14 -3.50 7.69 22.67 0.17 -3.33 16 22 C 0.13 2.82 11.14 85.06 0.95 3.77 16 23 N -0.48 -12.62 10.30 -188.74 -1.94 -14.57 16 24 C 0.11 3.11 6.61 40.34 0.27 3.38 16 25 C -0.10 -2.38 9.98 22.37 0.22 -2.16 16 26 C -0.09 -1.86 9.94 22.03 0.22 -1.64 16 27 C -0.11 -2.87 9.96 22.07 0.22 -2.65 16 28 C -0.12 -3.82 9.21 22.26 0.21 -3.62 16 29 C -0.09 -3.03 5.76 -21.09 -0.12 -3.15 16 30 H 0.25 16.70 8.31 -92.71 -0.77 15.93 16 31 H 0.36 17.89 4.86 -92.71 -0.45 17.44 16 32 H 0.02 1.16 6.35 -2.38 -0.02 1.14 16 33 H 0.02 1.02 8.13 -2.39 -0.02 1.00 16 34 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 38 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.10 0.92 8.14 -2.38 -0.02 0.90 16 40 H 0.09 1.54 5.20 -2.39 -0.01 1.53 16 41 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.16 3.10 7.44 -2.91 -0.02 3.08 16 43 H 0.21 2.44 8.06 -2.91 -0.02 2.42 16 44 H 0.16 2.84 8.06 -2.91 -0.02 2.81 16 45 H 0.17 2.09 8.06 -2.91 -0.02 2.06 16 46 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 47 H 0.11 4.26 6.31 -2.91 -0.02 4.24 16 Total: -1.00 -87.20 367.33 2.72 -84.47 By element: Atomic # 1 Polarization: 26.37 SS G_CDS: 0.48 Total: 26.85 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: 5.43 Total: 0.30 kcal Atomic # 7 Polarization: -135.67 SS G_CDS: -5.06 Total: -140.73 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: -0.04 Total: -23.46 kcal Atomic # 14 Polarization: 50.66 SS G_CDS: 1.90 Total: 52.57 kcal Total: -87.20 2.72 -84.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566942708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.213 kcal (2) G-P(sol) polarization free energy of solvation -87.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds