Wall clock time and date at job start Tue Mar 31 2020 23:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 119.99683 * 2 1 4 4 H 1.48509 * 109.47199 * 269.99542 * 3 2 1 5 5 H 1.48498 * 109.47382 * 29.99298 * 3 2 1 6 6 H 1.48501 * 109.47438 * 149.99870 * 3 2 1 7 7 C 1.38806 * 120.00258 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99945 * 157.94302 * 7 2 1 9 9 N 1.36940 * 120.00175 * 337.93917 * 7 2 1 10 10 C 1.46499 * 119.99715 * 324.92569 * 9 7 2 11 11 C 1.53000 * 109.47442 * 269.99852 * 10 9 7 12 12 N 1.46496 * 109.47156 * 180.02562 * 11 10 9 13 13 C 1.34777 * 119.99721 * 180.02562 * 12 11 10 14 14 O 1.21275 * 120.00372 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.99869 * 179.97438 * 13 12 11 16 16 C 1.50696 * 109.47211 * 179.97438 * 15 13 12 17 17 C 1.36211 * 120.67000 * 264.71945 * 16 15 13 18 18 N 1.32575 * 121.87704 * 180.27472 * 17 16 15 19 19 C 1.31272 * 122.77310 * 0.02562 * 18 17 16 20 20 C 1.40388 * 119.88687 * 359.97438 * 19 18 17 21 21 C 1.40378 * 122.08503 * 179.97438 * 20 19 18 22 22 C 1.36160 * 119.52102 * 180.02562 * 21 20 19 23 23 C 1.39389 * 121.08664 * 0.03996 * 22 21 20 24 24 C 1.36214 * 121.02344 * 359.97438 * 23 22 21 25 25 C 1.40238 * 119.48185 * 359.97438 * 24 23 22 26 26 C 1.46496 * 119.99895 * 144.92351 * 9 7 2 27 27 C 1.53004 * 117.50029 * 3.24389 * 26 9 7 28 28 C 1.52996 * 117.50221 * 294.58037 * 26 9 7 29 29 H 0.96999 * 120.00320 * 356.07320 * 1 2 3 30 30 H 1.08998 * 109.46829 * 149.99700 * 10 9 7 31 31 H 1.08997 * 109.47253 * 30.00348 * 10 9 7 32 32 H 1.08998 * 109.47233 * 60.00095 * 11 10 9 33 33 H 1.09000 * 109.46813 * 300.00321 * 11 10 9 34 34 H 0.97000 * 120.00399 * 0.02562 * 12 11 10 35 35 H 1.09009 * 109.46697 * 60.00132 * 15 13 12 36 36 H 1.08997 * 109.47228 * 300.00375 * 15 13 12 37 37 H 1.07994 * 119.05909 * 0.25892 * 17 16 15 38 38 H 1.08005 * 120.05454 * 180.02562 * 19 18 17 39 39 H 1.08001 * 120.24042 * 0.04964 * 21 20 19 40 40 H 1.07998 * 119.46070 * 180.02562 * 22 21 20 41 41 H 1.08004 * 119.48346 * 179.97438 * 23 22 21 42 42 H 1.07998 * 120.25250 * 179.97438 * 24 23 22 43 43 H 1.09003 * 115.54794 * 148.90546 * 26 9 7 44 44 H 1.08994 * 117.49528 * 359.97438 * 27 26 9 45 45 H 1.08997 * 117.49698 * 145.02147 * 27 26 9 46 46 H 1.08997 * 117.49995 * 214.97636 * 28 26 9 47 47 H 1.09001 * 117.50025 * 359.97438 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4002 5 1 1.4475 2.6528 0.6999 6 1 3.5477 1.4404 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0311 -1.2364 -0.3507 9 7 1.4009 -2.3444 0.4465 10 6 0.4457 -2.2800 1.5554 11 6 1.1887 -2.4650 2.8800 12 7 0.2334 -2.4012 3.9888 13 6 0.6644 -2.5390 5.2583 14 8 1.8429 -2.7164 5.4828 15 6 -0.3182 -2.4728 6.3990 16 6 0.4136 -2.6552 7.7037 17 6 0.4975 -3.8830 8.2875 18 7 1.1306 -4.0697 9.4373 19 6 1.7172 -3.0947 10.0920 20 6 1.6892 -1.7894 9.5759 21 6 2.3005 -0.7128 10.2375 22 6 2.2408 0.5324 9.6899 23 6 1.5815 0.7567 8.4824 24 6 0.9768 -0.2636 7.8126 25 6 1.0187 -1.5599 8.3459 26 6 1.7041 -3.6309 -0.1854 27 6 2.7657 -3.6441 -1.2871 28 6 1.2876 -3.8162 -1.6459 29 1 -0.4850 0.8380 0.0575 30 1 -0.2967 -3.0700 1.4418 31 1 -0.0520 -1.3103 1.5503 32 1 1.9311 -1.6751 2.9936 33 1 1.6864 -3.4348 2.8850 34 1 -0.7093 -2.2598 3.8093 35 1 -1.0604 -3.2631 6.2856 36 1 -0.8162 -1.5033 6.3938 37 1 0.0350 -4.7283 7.8000 38 1 2.2212 -3.2966 11.0256 39 1 2.8147 -0.8710 11.1740 40 1 2.7118 1.3599 10.1995 41 1 1.5498 1.7551 8.0716 42 1 0.4691 -0.0756 6.8781 43 1 1.6467 -4.5010 0.4686 44 1 3.2382 -2.6955 -1.5420 45 1 3.4064 -4.5230 -1.3581 46 1 0.9566 -4.8083 -1.9528 47 1 0.7876 -2.9811 -2.1365 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567442358.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:15 Heat of formation + Delta-G solvation = 45.160439 kcal Electronic energy + Delta-G solvation = -28380.228887 eV Core-core repulsion = 24528.419419 eV Total energy + Delta-G solvation = -3851.809468 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.99580 -40.50873 -38.85147 -38.25533 -36.34779 -35.12838 -34.98299 -32.73068 -32.15828 -31.33697 -29.92549 -28.36541 -26.25251 -24.91549 -24.50480 -23.57083 -22.95223 -22.49704 -21.61016 -21.22150 -18.91554 -18.59500 -18.48536 -17.78297 -17.45948 -17.27157 -16.91775 -16.44017 -16.26336 -15.81381 -15.62873 -15.30882 -15.25817 -14.79068 -14.61542 -14.45600 -14.41219 -14.25543 -13.77508 -13.64052 -13.31143 -13.08908 -12.96449 -12.89623 -12.67837 -12.63020 -12.52327 -12.14909 -11.98046 -11.92164 -11.68454 -11.40093 -11.23775 -10.96607 -10.77805 -10.51253 -10.47087 -10.03925 -10.02597 -8.98708 -8.58787 -7.86150 -5.49498 -0.60900 -0.05742 0.92975 1.40416 1.44722 1.53623 1.64982 2.06190 2.27742 2.49156 3.09826 3.12955 3.37051 3.38570 3.55467 3.58018 3.77116 3.78605 3.90135 3.97312 4.10740 4.22035 4.27804 4.31454 4.35138 4.39298 4.40695 4.50657 4.56548 4.60333 4.67507 4.80022 4.80526 4.92482 4.94042 5.02442 5.09097 5.13736 5.22135 5.31183 5.45430 5.47023 5.50236 5.52808 5.65353 5.66888 5.75250 5.92341 6.40623 6.62312 6.98396 7.10084 7.29784 7.78951 8.28166 9.06092 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013166 B = 0.002756 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.171259 B =10155.818869 C =11545.825876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C -0.028 4.028 3 Si 0.946 3.054 4 H -0.284 1.284 5 H -0.285 1.285 6 H -0.280 1.280 7 C -0.265 4.265 8 H 0.057 0.943 9 N -0.566 5.566 10 C 0.144 3.856 11 C 0.123 3.877 12 N -0.711 5.711 13 C 0.509 3.491 14 O -0.586 6.586 15 C -0.091 4.091 16 C -0.109 4.109 17 C 0.070 3.930 18 N -0.511 5.511 19 C 0.140 3.860 20 C -0.133 4.133 21 C -0.085 4.085 22 C -0.125 4.125 23 C -0.101 4.101 24 C -0.134 4.134 25 C -0.032 4.032 26 C 0.098 3.902 27 C -0.186 4.186 28 C -0.210 4.210 29 H 0.254 0.746 30 H 0.047 0.953 31 H 0.084 0.916 32 H 0.028 0.972 33 H 0.043 0.957 34 H 0.414 0.586 35 H 0.141 0.859 36 H 0.126 0.874 37 H 0.163 0.837 38 H 0.195 0.805 39 H 0.167 0.833 40 H 0.157 0.843 41 H 0.143 0.857 42 H 0.126 0.874 43 H 0.110 0.890 44 H 0.074 0.926 45 H 0.109 0.891 46 H 0.103 0.897 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.588 -2.325 19.838 20.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.226 4.226 3 Si 0.774 3.226 4 H -0.211 1.211 5 H -0.211 1.211 6 H -0.206 1.206 7 C -0.395 4.395 8 H 0.074 0.926 9 N -0.284 5.284 10 C 0.017 3.983 11 C -0.004 4.004 12 N -0.364 5.364 13 C 0.296 3.704 14 O -0.466 6.466 15 C -0.131 4.131 16 C -0.111 4.111 17 C -0.072 4.072 18 N -0.219 5.219 19 C -0.031 4.031 20 C -0.135 4.135 21 C -0.105 4.105 22 C -0.143 4.143 23 C -0.120 4.120 24 C -0.152 4.152 25 C -0.037 4.037 26 C -0.010 4.010 27 C -0.224 4.224 28 C -0.251 4.251 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.101 0.899 32 H 0.046 0.954 33 H 0.061 0.939 34 H 0.251 0.749 35 H 0.159 0.841 36 H 0.144 0.856 37 H 0.180 0.820 38 H 0.212 0.788 39 H 0.184 0.816 40 H 0.174 0.826 41 H 0.161 0.839 42 H 0.144 0.856 43 H 0.128 0.872 44 H 0.093 0.907 45 H 0.127 0.873 46 H 0.122 0.878 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.942 -3.208 20.142 20.488 hybrid contribution 0.074 1.905 -1.117 2.210 sum -1.868 -1.303 19.025 19.160 Atomic orbital electron populations 1.70113 1.06231 1.26407 1.52182 1.25632 0.95670 1.00884 1.00410 0.85636 0.78505 0.80779 0.77671 1.21052 1.21099 1.20557 1.19185 0.94319 0.86763 1.39238 0.92572 1.43434 1.49472 1.02121 1.33339 1.20973 0.90881 1.02793 0.83611 1.21751 0.92371 0.99069 0.87171 1.45914 1.12359 1.72768 1.05312 1.21091 0.89378 0.75546 0.84337 1.90702 1.20129 1.50690 1.85127 1.20645 0.97018 1.07913 0.87476 1.20189 1.00111 0.94255 0.96568 1.22280 0.96789 0.96229 0.91942 1.67437 1.09397 1.36218 1.08832 1.23722 0.93541 0.86764 0.99083 1.19346 1.01186 0.97018 0.95915 1.21375 0.97290 0.91350 1.00459 1.21316 0.98994 0.98376 0.95626 1.21366 0.95495 0.99866 0.95239 1.21117 1.01667 0.92048 1.00357 1.18300 0.96492 0.94393 0.94519 1.21530 1.01951 0.89479 0.88003 1.23054 0.92046 1.02265 1.05043 1.23264 0.97476 1.01117 1.03230 0.93683 0.93475 0.89887 0.95358 0.93911 0.74915 0.84074 0.85619 0.81955 0.78844 0.81584 0.82555 0.83882 0.85628 0.87220 0.90749 0.87265 0.87828 0.92342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.52 11.33 21.65 0.25 -49.27 16 2 C -0.03 -1.49 4.96 84.86 0.42 -1.07 16 3 Si 0.95 43.66 29.61 68.60 2.03 45.69 16 4 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 5 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 7 C -0.26 -14.09 8.63 84.03 0.72 -13.36 16 8 H 0.06 3.05 6.55 -2.91 -0.02 3.03 16 9 N -0.57 -27.10 2.78 -678.04 -1.88 -28.99 16 10 C 0.14 6.20 5.45 86.38 0.47 6.67 16 11 C 0.12 4.89 6.00 86.38 0.52 5.41 16 12 N -0.71 -21.83 5.56 -463.08 -2.57 -24.40 16 13 C 0.51 15.83 7.82 87.66 0.69 16.52 16 14 O -0.59 -24.30 16.03 -3.01 -0.05 -24.35 16 15 C -0.09 -1.91 5.30 29.10 0.15 -1.76 16 16 C -0.11 -2.78 4.39 -19.75 -0.09 -2.87 16 17 C 0.07 1.79 10.72 84.11 0.90 2.69 16 18 N -0.51 -13.27 10.30 -195.54 -2.01 -15.29 16 19 C 0.14 3.00 11.05 85.30 0.94 3.94 16 20 C -0.13 -3.02 5.74 -21.31 -0.12 -3.14 16 21 C -0.09 -1.41 9.81 22.31 0.22 -1.19 16 22 C -0.13 -2.02 9.94 22.06 0.22 -1.80 16 23 C -0.10 -1.99 9.95 22.08 0.22 -1.77 16 24 C -0.13 -3.26 9.33 22.28 0.21 -3.05 16 25 C -0.03 -0.84 5.75 -21.28 -0.12 -0.96 16 26 C 0.10 4.03 6.56 44.99 0.30 4.32 16 27 C -0.19 -7.05 9.80 30.62 0.30 -6.75 16 28 C -0.21 -8.13 10.36 30.62 0.32 -7.81 16 29 H 0.25 13.39 8.32 -92.71 -0.77 12.61 16 30 H 0.05 1.85 8.07 -2.39 -0.02 1.83 16 31 H 0.08 4.02 5.36 -2.39 -0.01 4.01 16 32 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.41 9.99 8.47 -92.71 -0.79 9.20 16 35 H 0.14 1.98 8.05 -2.38 -0.02 1.96 16 36 H 0.13 2.12 6.84 -2.39 -0.02 2.10 16 37 H 0.16 3.42 8.05 -2.91 -0.02 3.40 16 38 H 0.19 2.53 8.06 -2.91 -0.02 2.50 16 39 H 0.17 1.47 8.06 -2.91 -0.02 1.45 16 40 H 0.16 1.50 8.06 -2.91 -0.02 1.47 16 41 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 42 H 0.13 2.95 6.65 -2.91 -0.02 2.93 16 43 H 0.11 3.97 8.14 -2.39 -0.02 3.95 16 44 H 0.07 3.18 6.37 -2.39 -0.02 3.16 16 45 H 0.11 3.38 8.14 -2.39 -0.02 3.36 16 46 H 0.10 3.30 8.14 -2.39 -0.02 3.28 16 47 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 Total: -1.00 -73.43 392.32 2.23 -71.20 By element: Atomic # 1 Polarization: 31.18 SS G_CDS: 0.21 Total: 31.39 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: 6.27 Total: -5.99 kcal Atomic # 7 Polarization: -111.72 SS G_CDS: -6.23 Total: -117.94 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: -0.05 Total: -24.35 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -73.43 2.23 -71.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567442358.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.358 kcal (2) G-P(sol) polarization free energy of solvation -73.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds