Wall clock time and date at job start Tue Mar 31 2020 22:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48508 * 109.46685 * 89.99762 * 3 2 1 5 5 H 1.48494 * 109.47357 * 209.99841 * 3 2 1 6 6 H 1.48502 * 109.47120 * 330.00560 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47264 * 179.97438 * 10 9 7 12 12 H 1.09002 * 110.01216 * 54.29966 * 11 10 9 13 13 C 1.54262 * 110.03126 * 292.90636 * 11 10 9 14 14 C 1.54965 * 104.15911 * 217.13226 * 13 11 10 15 15 C 1.54888 * 102.77803 * 37.89093 * 14 13 11 16 16 C 1.53879 * 110.03323 * 175.68624 * 11 10 9 17 17 H 1.08997 * 110.03092 * 238.56662 * 16 11 10 18 18 N 1.46497 * 110.02938 * 0.02562 * 16 11 10 19 19 C 1.34781 * 119.99605 * 204.99599 * 18 16 11 20 20 O 1.21503 * 119.99853 * 0.02562 * 19 18 16 21 21 C 1.48274 * 120.00085 * 179.97438 * 19 18 16 22 22 C 1.40278 * 119.24306 * 180.02562 * 21 19 18 23 23 C 1.36509 * 119.82113 * 179.97438 * 22 21 19 24 24 C 1.40754 * 118.24073 * 0.02562 * 23 22 21 25 25 C 1.40420 * 121.28545 * 180.02562 * 24 23 22 26 26 C 1.36132 * 119.65324 * 180.02562 * 25 24 23 27 27 C 1.39440 * 120.91366 * 359.95292 * 26 25 24 28 28 C 1.35993 * 121.08304 * 0.02562 * 27 26 25 29 29 C 1.40819 * 119.73602 * 0.02562 * 28 27 26 30 30 N 1.31877 * 119.23823 * 359.73004 * 21 19 18 31 31 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 32 32 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 33 33 H 1.09003 * 109.47433 * 299.99456 * 10 9 7 34 34 H 1.08999 * 109.47686 * 59.99159 * 10 9 7 35 35 H 1.08996 * 110.48825 * 335.78142 * 13 11 10 36 36 H 1.08999 * 110.48577 * 98.42783 * 13 11 10 37 37 H 1.09000 * 110.72226 * 279.57513 * 14 13 11 38 38 H 1.09007 * 110.76427 * 156.22182 * 14 13 11 39 39 H 1.09002 * 110.49015 * 203.40644 * 15 14 13 40 40 H 1.09007 * 110.59982 * 80.81294 * 15 14 13 41 41 H 0.96998 * 120.00831 * 25.00058 * 18 16 11 42 42 H 1.07998 * 120.08994 * 359.95664 * 22 21 19 43 43 H 1.07997 * 120.87970 * 179.97438 * 23 22 21 44 44 H 1.08001 * 120.17373 * 359.96806 * 25 24 23 45 45 H 1.07998 * 119.54138 * 179.97438 * 26 25 24 46 46 H 1.08004 * 119.45171 * 180.02562 * 27 26 25 47 47 H 1.08000 * 120.13017 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 1.4002 5 1 3.5478 1.4401 -0.7000 6 1 1.4477 2.6527 -0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0637 -4.8197 -0.0022 12 1 0.3674 -4.7147 -0.8342 13 6 0.2911 -4.8551 1.3325 14 6 0.1263 -6.3659 1.6352 15 6 1.4765 -6.9593 1.1620 16 6 1.8169 -6.1571 -0.1110 17 1 1.4854 -6.7015 -0.9951 18 7 3.2602 -5.9159 -0.1807 19 6 4.0675 -6.8229 -0.7658 20 8 3.5981 -7.8402 -1.2359 21 6 5.5282 -6.5786 -0.8369 22 6 6.3536 -7.5329 -1.4500 23 6 7.7000 -7.3198 -1.5225 24 6 8.2171 -6.1328 -0.9704 25 6 9.5916 -5.8484 -1.0100 26 6 10.0558 -4.6904 -0.4653 27 6 9.1847 -3.7799 0.1318 28 6 7.8475 -4.0211 0.1883 29 6 7.3280 -5.2083 -0.3628 30 7 6.0209 -5.4664 -0.3276 31 1 -0.4850 -0.8401 -0.0004 32 1 0.3556 -2.3880 -0.0016 33 1 2.6853 -3.7142 -0.8912 34 1 2.6841 -3.7150 0.8887 35 1 0.8672 -4.3690 2.1198 36 1 -0.6832 -4.3789 1.2220 37 1 -0.7016 -6.7857 1.0638 38 1 -0.0159 -6.5328 2.7030 39 1 1.3667 -8.0182 0.9277 40 1 2.2457 -6.8152 1.9208 41 1 3.6350 -5.1036 0.1943 42 1 5.9250 -8.4340 -1.8633 43 1 8.3513 -8.0432 -1.9902 44 1 10.2771 -6.5453 -1.4693 45 1 11.1134 -4.4738 -0.4964 46 1 9.5785 -2.8682 0.5563 47 1 7.1867 -3.3050 0.6541 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568541899.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:35 Heat of formation + Delta-G solvation = 29.166365 kcal Electronic energy + Delta-G solvation = -28818.010940 eV Core-core repulsion = 24965.507918 eV Total energy + Delta-G solvation = -3852.503023 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.24295 -39.95285 -38.19393 -36.98401 -34.64010 -34.08322 -33.37844 -31.42272 -30.99654 -30.30971 -28.36779 -27.68288 -25.22837 -24.25388 -23.86940 -22.64406 -22.37490 -21.32614 -20.51046 -19.08074 -18.53813 -18.09819 -17.47201 -17.14888 -16.11317 -15.67899 -15.33884 -15.09180 -14.99692 -14.68150 -14.48063 -14.28692 -14.18683 -13.84488 -13.68247 -13.43293 -13.37203 -13.30213 -12.94622 -12.25105 -11.99484 -11.94681 -11.80847 -11.66182 -11.24898 -10.88500 -10.87754 -10.75722 -10.57368 -10.52226 -10.45190 -10.32888 -10.23429 -9.99676 -9.69208 -9.15705 -9.11986 -8.94200 -8.81677 -8.57280 -6.98154 -6.08325 -3.07610 -0.05633 0.41006 1.66976 2.23704 3.07549 3.11380 3.52156 3.57357 3.71305 3.84406 3.89523 4.25087 4.44430 4.51321 4.56483 4.66274 4.74074 4.78263 4.84598 4.87432 5.06010 5.07575 5.16349 5.41433 5.47646 5.54445 5.57058 5.63964 5.65505 5.71072 5.72988 5.76869 5.81176 5.88423 6.00838 6.03568 6.08067 6.11440 6.14490 6.19113 6.25068 6.40167 6.50250 6.52892 6.59300 6.69068 6.77497 7.36726 7.66733 7.83576 8.18723 8.78266 9.25357 10.11730 10.26936 11.40489 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007930 B = 0.003783 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3529.833113 B = 7400.711853 C =10443.152525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.045 4.045 3 Si 1.082 2.918 4 H -0.295 1.295 5 H -0.295 1.295 6 H -0.288 1.288 7 C -0.330 4.330 8 H 0.064 0.936 9 N -0.739 5.739 10 C 0.163 3.837 11 C -0.110 4.110 12 H 0.081 0.919 13 C -0.112 4.112 14 C -0.123 4.123 15 C -0.132 4.132 16 C 0.147 3.853 17 H 0.092 0.908 18 N -0.697 5.697 19 C 0.567 3.433 20 O -0.538 6.538 21 C 0.117 3.883 22 C -0.125 4.125 23 C -0.065 4.065 24 C -0.088 4.088 25 C -0.105 4.105 26 C -0.106 4.106 27 C -0.106 4.106 28 C -0.080 4.080 29 C 0.124 3.876 30 N -0.437 5.437 31 H 0.255 0.745 32 H 0.367 0.633 33 H 0.023 0.977 34 H 0.020 0.980 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.418 0.582 42 H 0.150 0.850 43 H 0.145 0.855 44 H 0.131 0.869 45 H 0.129 0.871 46 H 0.133 0.867 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.224 -16.361 0.412 23.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.243 4.243 3 Si 0.913 3.087 4 H -0.223 1.223 5 H -0.222 1.222 6 H -0.214 1.214 7 C -0.461 4.461 8 H 0.082 0.918 9 N -0.385 5.385 10 C 0.035 3.965 11 C -0.129 4.129 12 H 0.100 0.900 13 C -0.150 4.150 14 C -0.161 4.161 15 C -0.170 4.170 16 C 0.041 3.959 17 H 0.110 0.890 18 N -0.350 5.350 19 C 0.351 3.649 20 O -0.415 6.415 21 C -0.037 4.037 22 C -0.145 4.145 23 C -0.091 4.091 24 C -0.090 4.090 25 C -0.124 4.124 26 C -0.124 4.124 27 C -0.126 4.126 28 C -0.099 4.099 29 C 0.001 3.999 30 N -0.148 5.148 31 H 0.066 0.934 32 H 0.201 0.799 33 H 0.041 0.959 34 H 0.038 0.962 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.259 0.741 42 H 0.168 0.832 43 H 0.163 0.837 44 H 0.149 0.851 45 H 0.147 0.853 46 H 0.151 0.849 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 16.443 -14.724 0.484 22.077 hybrid contribution 0.729 -1.838 -0.267 1.995 sum 17.172 -16.562 0.217 23.858 Atomic orbital electron populations 1.70848 1.06034 1.28412 1.53797 1.25745 0.97060 1.00914 1.00544 0.83211 0.73902 0.75398 0.76216 1.22325 1.22191 1.21404 1.20058 0.92035 0.85798 1.48183 0.91770 1.42319 1.04842 1.00731 1.90608 1.20611 0.93129 0.85032 0.97690 1.22251 0.97949 0.93662 0.99042 0.90022 1.22380 1.00499 0.95360 0.96758 1.22493 0.96738 0.96112 1.00782 1.22771 0.97822 0.99427 0.97019 1.21731 0.78860 0.96200 0.99060 0.89024 1.46304 1.07575 1.23516 1.57655 1.17941 0.84867 0.83585 0.78511 1.90753 1.75554 1.27206 1.47973 1.21389 0.94814 0.91007 0.96440 1.21737 0.93608 1.00540 0.98650 1.21447 0.95235 0.95753 0.96619 1.18990 0.95053 0.95570 0.99373 1.20979 0.93464 0.97917 1.00008 1.21024 1.00275 0.93939 0.97143 1.20972 0.93063 0.99763 0.98806 1.21009 0.95714 0.95184 0.97946 1.18866 0.88155 0.95133 0.97756 1.67868 1.14020 1.18098 1.14850 0.93381 0.79948 0.95932 0.96250 0.90956 0.91340 0.91463 0.91522 0.91301 0.91235 0.74120 0.83189 0.83697 0.85071 0.85335 0.84904 0.83972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -29.38 13.70 55.49 0.76 -28.62 16 2 C -0.05 -1.32 5.50 -17.43 -0.10 -1.42 16 3 Si 1.08 26.17 29.92 -169.99 -5.09 21.09 16 4 H -0.30 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.30 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.33 -9.39 9.99 -15.06 -0.15 -9.54 16 8 H 0.06 1.81 7.83 -52.49 -0.41 1.40 16 9 N -0.74 -18.69 5.44 -59.91 -0.33 -19.02 16 10 C 0.16 3.32 4.18 -4.05 -0.02 3.31 16 11 C -0.11 -1.81 2.97 -89.50 -0.27 -2.08 16 12 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 13 C -0.11 -1.71 6.05 -25.03 -0.15 -1.87 16 14 C -0.12 -1.53 6.91 -24.70 -0.17 -1.70 16 15 C -0.13 -1.72 6.53 -25.07 -0.16 -1.89 16 16 C 0.15 2.18 3.23 -66.81 -0.22 1.96 16 17 H 0.09 1.40 7.57 -51.93 -0.39 1.01 16 18 N -0.70 -10.76 4.38 -53.52 -0.23 -11.00 16 19 C 0.57 8.87 7.81 -12.13 -0.09 8.77 16 20 O -0.54 -9.24 15.94 5.36 0.09 -9.15 16 21 C 0.12 1.67 6.75 -82.95 -0.56 1.11 16 22 C -0.12 -1.44 9.54 -39.44 -0.38 -1.81 16 23 C -0.06 -0.61 9.88 -39.26 -0.39 -1.00 16 24 C -0.09 -0.94 5.75 -106.71 -0.61 -1.55 16 25 C -0.10 -0.84 9.77 -39.52 -0.39 -1.23 16 26 C -0.11 -0.79 9.96 -39.89 -0.40 -1.19 16 27 C -0.11 -0.92 9.94 -39.94 -0.40 -1.32 16 28 C -0.08 -0.91 9.99 -39.41 -0.39 -1.30 16 29 C 0.12 1.61 6.61 -84.85 -0.56 1.05 16 30 N -0.44 -6.39 9.47 -7.54 -0.07 -6.46 16 31 H 0.25 7.79 6.77 -40.82 -0.28 7.51 16 32 H 0.37 9.46 6.36 -40.82 -0.26 9.21 16 33 H 0.02 0.49 7.46 -51.93 -0.39 0.10 16 34 H 0.02 0.41 7.08 -51.93 -0.37 0.04 16 35 H 0.07 1.21 7.77 -51.93 -0.40 0.80 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.07 0.92 8.05 -51.93 -0.42 0.50 16 41 H 0.42 6.70 5.19 -40.82 -0.21 6.49 16 42 H 0.15 1.55 7.60 -52.49 -0.40 1.15 16 43 H 0.15 0.84 8.06 -52.49 -0.42 0.42 16 44 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 45 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 46 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 47 H 0.14 1.60 8.06 -52.49 -0.42 1.17 16 LS Contribution 384.19 15.07 5.79 5.79 Total: -1.00 -34.13 384.19 -11.03 -45.16 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: -6.55 Total: 13.89 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: -5.40 Total: -11.68 kcal Atomic # 7 Polarization: -65.23 SS G_CDS: 0.13 Total: -65.10 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.09 Total: -9.15 kcal Atomic # 14 Polarization: 26.17 SS G_CDS: -5.09 Total: 21.09 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.13 -11.03 -45.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568541899.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.326 kcal (2) G-P(sol) polarization free energy of solvation -34.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds