Wall clock time and date at job start Tue Mar 31 2020 22:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 119.99844 * 2 1 4 4 H 1.48502 * 109.47201 * 240.00214 * 3 2 1 5 5 H 1.48505 * 109.47332 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46973 * 120.00100 * 3 2 1 7 7 C 1.38807 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99961 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00503 * 359.97438 * 7 2 1 10 10 C 1.46492 * 120.00253 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47406 * 179.97438 * 10 9 7 12 12 H 1.09000 * 110.53634 * 307.61766 * 11 10 9 13 13 C 1.54889 * 110.48006 * 70.22656 * 11 10 9 14 14 C 1.54888 * 102.74639 * 156.62368 * 13 11 10 15 15 C 1.54267 * 104.19675 * 322.05500 * 14 13 11 16 16 C 1.53873 * 106.59687 * 23.60987 * 15 14 13 17 17 H 1.09000 * 110.03345 * 240.66535 * 16 15 14 18 18 N 1.46499 * 110.03451 * 119.28352 * 16 15 14 19 19 C 1.34780 * 119.99770 * 86.44986 * 18 16 15 20 20 O 1.21502 * 119.99991 * 0.02562 * 19 18 16 21 21 C 1.48279 * 119.99775 * 180.02562 * 19 18 16 22 22 C 1.40281 * 119.23544 * 179.97438 * 21 19 18 23 23 C 1.36504 * 119.81225 * 180.02562 * 22 21 19 24 24 C 1.40750 * 118.24446 * 359.97438 * 23 22 21 25 25 C 1.40422 * 121.27562 * 179.97438 * 24 23 22 26 26 C 1.36132 * 119.65263 * 180.02562 * 25 24 23 27 27 C 1.39433 * 120.91028 * 359.97438 * 26 25 24 28 28 C 1.35995 * 121.09052 * 0.26699 * 27 26 25 29 29 C 1.40825 * 119.73176 * 359.47560 * 28 27 26 30 30 N 1.31870 * 119.24096 * 0.02562 * 21 19 18 31 31 H 0.96999 * 119.99641 * 359.97438 * 1 2 3 32 32 H 0.96995 * 119.99528 * 359.97438 * 9 7 2 33 33 H 1.09007 * 109.47083 * 59.99861 * 10 9 7 34 34 H 1.09000 * 109.47434 * 299.99799 * 10 9 7 35 35 H 1.08997 * 110.76105 * 38.30622 * 13 11 10 36 36 H 1.09004 * 110.91458 * 275.00925 * 13 11 10 37 37 H 1.09001 * 110.49178 * 203.37618 * 14 13 11 38 38 H 1.09005 * 110.48993 * 80.73635 * 14 13 11 39 39 H 1.09000 * 110.03243 * 264.32859 * 15 14 13 40 40 H 1.08997 * 110.07367 * 142.91636 * 15 14 13 41 41 H 0.97000 * 120.00427 * 266.45619 * 18 16 15 42 42 H 1.07997 * 120.09432 * 359.97438 * 22 21 19 43 43 H 1.08000 * 120.87590 * 180.02562 * 23 22 21 44 44 H 1.08003 * 120.17000 * 0.02562 * 25 24 23 45 45 H 1.08000 * 119.54245 * 180.02562 * 26 25 24 46 46 H 1.08009 * 119.45182 * 179.97438 * 27 26 25 47 47 H 1.07995 * 120.13836 * 179.73967 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 6 1.0639 -4.8197 0.0001 12 1 0.3422 -4.7054 0.8089 13 6 0.3381 -4.9130 -1.3650 14 6 -0.1125 -6.3941 -1.4120 15 6 1.0593 -7.1666 -0.7718 16 6 1.8073 -6.1655 0.1260 17 1 2.8375 -6.0571 -0.2132 18 7 1.7832 -6.6238 1.5173 19 6 2.7268 -7.4773 1.9621 20 8 3.5976 -7.8662 1.2093 21 6 2.7020 -7.9415 3.3701 22 6 3.6916 -8.8303 3.8160 23 6 3.6797 -9.2656 5.1097 24 6 2.6600 -8.7989 5.9602 25 6 2.5868 -9.2058 7.3021 26 6 1.5861 -8.7342 8.0954 27 6 0.6309 -7.8506 7.5941 28 6 0.6669 -7.4383 6.2987 29 6 1.6896 -7.8992 5.4473 30 7 1.7497 -7.5103 4.1739 31 1 -0.4849 0.8401 0.0004 32 1 0.3557 -2.3880 0.0002 33 1 2.6848 -3.7144 0.8895 34 1 2.6847 -3.7145 -0.8905 35 1 1.0237 -4.6917 -2.1830 36 1 -0.5235 -4.2460 -1.3940 37 1 -0.2628 -6.7148 -2.4429 38 1 -1.0243 -6.5342 -0.8313 39 1 1.7263 -7.5433 -1.5473 40 1 0.6791 -7.9939 -0.1725 41 1 1.0882 -6.3131 2.1183 42 1 4.4601 -9.1697 3.1374 43 1 4.4334 -9.9495 5.4712 44 1 3.3207 -9.8895 7.7028 45 1 1.5317 -9.0480 9.1273 46 1 -0.1532 -7.4915 8.2443 47 1 -0.0832 -6.7569 5.9255 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568541900.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:39 Heat of formation + Delta-G solvation = 20.915120 kcal Electronic energy + Delta-G solvation = -28211.752509 eV Core-core repulsion = 24358.891685 eV Total energy + Delta-G solvation = -3852.860824 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.29606 -39.85563 -38.10488 -37.03100 -34.49977 -34.05363 -33.33753 -31.36323 -31.05574 -30.38260 -28.56288 -27.67556 -25.37285 -24.40163 -23.90900 -22.45982 -22.13303 -21.36055 -20.08076 -19.81372 -18.44852 -17.99087 -17.52868 -16.96433 -16.34783 -15.59232 -15.38612 -15.08992 -14.86075 -14.76777 -14.44889 -14.33210 -14.05426 -13.81699 -13.60851 -13.45109 -13.24173 -13.15143 -12.79407 -12.10870 -12.06953 -12.03474 -11.87001 -11.67835 -11.31438 -10.95246 -10.92041 -10.80366 -10.74361 -10.50194 -10.35081 -10.31815 -10.26287 -9.97227 -9.75230 -9.65187 -9.17795 -8.92121 -8.82414 -8.64842 -6.87353 -5.72691 -3.00666 -0.12735 0.34361 1.59529 2.18374 3.03071 3.07173 3.47109 3.51069 3.52342 3.77778 3.82829 4.18212 4.38694 4.44441 4.55353 4.59647 4.74412 4.78061 4.82279 4.87322 4.98339 5.08775 5.10785 5.39660 5.50807 5.55620 5.59945 5.62553 5.67931 5.69141 5.71184 5.82442 5.86865 5.95989 5.96975 6.03506 6.09377 6.11149 6.21896 6.26084 6.33593 6.42880 6.56827 6.59502 6.61892 6.83213 6.95066 7.30284 7.61733 7.73831 8.16533 8.46590 9.57715 10.15812 10.51103 11.50254 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010262 B = 0.002647 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2727.886021 B =10574.098369 C =12066.064763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.287 1.287 7 C -0.237 4.237 8 H 0.069 0.931 9 N -0.730 5.730 10 C 0.161 3.839 11 C -0.102 4.102 12 H 0.081 0.919 13 C -0.110 4.110 14 C -0.125 4.125 15 C -0.131 4.131 16 C 0.144 3.856 17 H 0.095 0.905 18 N -0.695 5.695 19 C 0.567 3.433 20 O -0.533 6.533 21 C 0.120 3.880 22 C -0.125 4.125 23 C -0.064 4.064 24 C -0.088 4.088 25 C -0.103 4.103 26 C -0.108 4.108 27 C -0.106 4.106 28 C -0.082 4.082 29 C 0.124 3.876 30 N -0.440 5.440 31 H 0.255 0.745 32 H 0.384 0.616 33 H 0.017 0.983 34 H 0.021 0.979 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.411 0.589 42 H 0.151 0.849 43 H 0.146 0.854 44 H 0.132 0.868 45 H 0.129 0.871 46 H 0.132 0.868 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.545 -23.644 13.269 27.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.369 4.369 8 H 0.087 0.913 9 N -0.374 5.374 10 C 0.034 3.966 11 C -0.121 4.121 12 H 0.099 0.901 13 C -0.148 4.148 14 C -0.162 4.162 15 C -0.169 4.169 16 C 0.039 3.961 17 H 0.113 0.887 18 N -0.345 5.345 19 C 0.351 3.649 20 O -0.409 6.409 21 C -0.033 4.033 22 C -0.145 4.145 23 C -0.090 4.090 24 C -0.091 4.091 25 C -0.121 4.121 26 C -0.126 4.126 27 C -0.125 4.125 28 C -0.101 4.101 29 C 0.000 4.000 30 N -0.152 5.152 31 H 0.065 0.935 32 H 0.217 0.783 33 H 0.035 0.965 34 H 0.039 0.961 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.248 0.752 42 H 0.169 0.831 43 H 0.163 0.837 44 H 0.150 0.850 45 H 0.147 0.853 46 H 0.150 0.850 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 1.613 -23.182 12.443 26.360 hybrid contribution 0.488 0.561 0.743 1.051 sum 2.101 -22.621 13.186 26.268 Atomic orbital electron populations 1.69649 1.05062 1.25669 1.57968 1.24717 0.95522 0.97609 1.03170 0.86273 0.78517 0.83595 0.77849 1.21289 1.21710 1.21333 1.19191 0.91001 0.84224 1.42446 0.91338 1.42307 1.05811 0.99841 1.89456 1.20681 0.92921 0.85184 0.97858 1.22430 0.97947 0.93050 0.98672 0.90105 1.22451 1.00518 0.95217 0.96607 1.22388 0.97604 0.95963 1.00295 1.22540 0.97581 0.97884 0.98929 1.21806 1.01305 0.93217 0.79735 0.88734 1.46071 1.29841 1.45472 1.13144 1.17900 0.81992 0.79525 0.85475 1.90777 1.36691 1.57321 1.56122 1.21425 0.92258 0.95362 0.94304 1.21764 0.99235 0.96761 0.96758 1.21463 0.96799 0.97874 0.92822 1.18991 0.96374 0.98231 0.95461 1.20999 0.98987 1.00048 0.92103 1.21018 0.94475 0.96851 1.00216 1.20962 0.99033 0.97161 0.95388 1.20947 0.97024 0.99292 0.92818 1.18862 0.95287 0.95499 0.90324 1.67836 1.21966 1.21698 1.03678 0.93535 0.78258 0.96498 0.96080 0.91030 0.90675 0.91788 0.91819 0.91208 0.91747 0.75249 0.83104 0.83660 0.85035 0.85331 0.84973 0.84155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.46 13.06 55.49 0.72 -27.74 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.80 29.55 -169.99 -5.02 17.77 16 4 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 6 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 7 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 8 H 0.07 1.92 7.83 -52.48 -0.41 1.50 16 9 N -0.73 -18.69 5.49 -59.91 -0.33 -19.02 16 10 C 0.16 3.34 5.54 -4.04 -0.02 3.32 16 11 C -0.10 -1.66 2.58 -88.96 -0.23 -1.89 16 12 H 0.08 1.33 7.73 -51.93 -0.40 0.93 16 13 C -0.11 -1.67 6.19 -24.74 -0.15 -1.82 16 14 C -0.12 -1.54 6.83 -25.07 -0.17 -1.72 16 15 C -0.13 -1.67 6.59 -25.61 -0.17 -1.84 16 16 C 0.14 2.10 2.79 -66.81 -0.19 1.92 16 17 H 0.09 1.53 7.30 -51.93 -0.38 1.15 16 18 N -0.69 -9.79 4.98 -53.53 -0.27 -10.06 16 19 C 0.57 8.38 7.80 -12.13 -0.09 8.28 16 20 O -0.53 -9.01 15.96 5.36 0.09 -8.92 16 21 C 0.12 1.58 6.75 -82.95 -0.56 1.02 16 22 C -0.12 -1.34 9.54 -39.44 -0.38 -1.72 16 23 C -0.06 -0.55 9.88 -39.26 -0.39 -0.94 16 24 C -0.09 -0.85 5.75 -106.71 -0.61 -1.47 16 25 C -0.10 -0.73 9.77 -39.52 -0.39 -1.11 16 26 C -0.11 -0.69 9.96 -39.89 -0.40 -1.09 16 27 C -0.11 -0.76 9.94 -39.94 -0.40 -1.15 16 28 C -0.08 -0.78 9.99 -39.41 -0.39 -1.17 16 29 C 0.12 1.42 6.61 -84.85 -0.56 0.86 16 30 N -0.44 -5.70 9.47 -7.54 -0.07 -5.77 16 31 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 32 H 0.38 10.20 7.64 -40.82 -0.31 9.89 16 33 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.02 0.45 8.02 -51.93 -0.42 0.03 16 35 H 0.07 1.13 7.97 -51.93 -0.41 0.71 16 36 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.06 0.81 7.92 -51.93 -0.41 0.40 16 41 H 0.41 5.49 7.64 -40.82 -0.31 5.18 16 42 H 0.15 1.49 7.60 -52.49 -0.40 1.09 16 43 H 0.15 0.76 8.06 -52.49 -0.42 0.33 16 44 H 0.13 0.58 8.06 -52.48 -0.42 0.16 16 45 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 46 H 0.13 0.63 8.06 -52.48 -0.42 0.21 16 47 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 390.78 15.07 5.89 5.89 Total: -1.00 -33.55 390.78 -11.15 -44.70 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: -6.82 Total: 11.13 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: -5.34 Total: -7.98 kcal Atomic # 7 Polarization: -62.65 SS G_CDS: 0.06 Total: -62.59 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.09 Total: -8.92 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.77 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.55 -11.15 -44.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568541900.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.616 kcal (2) G-P(sol) polarization free energy of solvation -33.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds