Wall clock time and date at job start Tue Mar 31 2020 22:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 119.99844 * 2 1 4 4 H 1.48502 * 109.47201 * 240.00214 * 3 2 1 5 5 H 1.48505 * 109.47332 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46973 * 120.00100 * 3 2 1 7 7 C 1.38807 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99961 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00503 * 359.97438 * 7 2 1 10 10 C 1.46492 * 120.00253 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47406 * 179.97438 * 10 9 7 12 12 H 1.09000 * 110.53634 * 307.61766 * 11 10 9 13 13 C 1.54889 * 110.48006 * 70.22656 * 11 10 9 14 14 C 1.54888 * 102.74639 * 156.62368 * 13 11 10 15 15 C 1.54267 * 104.19675 * 322.05500 * 14 13 11 16 16 C 1.53873 * 106.59687 * 23.60987 * 15 14 13 17 17 H 1.09000 * 110.03345 * 240.66535 * 16 15 14 18 18 N 1.46499 * 110.03451 * 119.28352 * 16 15 14 19 19 C 1.34780 * 119.99770 * 86.44986 * 18 16 15 20 20 O 1.21502 * 119.99991 * 0.02562 * 19 18 16 21 21 C 1.48279 * 119.99775 * 180.02562 * 19 18 16 22 22 C 1.40281 * 119.23544 * 179.97438 * 21 19 18 23 23 C 1.36504 * 119.81225 * 180.02562 * 22 21 19 24 24 C 1.40750 * 118.24446 * 359.97438 * 23 22 21 25 25 C 1.40422 * 121.27562 * 179.97438 * 24 23 22 26 26 C 1.36132 * 119.65263 * 180.02562 * 25 24 23 27 27 C 1.39433 * 120.91028 * 359.97438 * 26 25 24 28 28 C 1.35995 * 121.09052 * 0.26699 * 27 26 25 29 29 C 1.40825 * 119.73176 * 359.47560 * 28 27 26 30 30 N 1.31870 * 119.24096 * 0.02562 * 21 19 18 31 31 H 0.96999 * 119.99641 * 359.97438 * 1 2 3 32 32 H 0.96995 * 119.99528 * 359.97438 * 9 7 2 33 33 H 1.09007 * 109.47083 * 59.99861 * 10 9 7 34 34 H 1.09000 * 109.47434 * 299.99799 * 10 9 7 35 35 H 1.08997 * 110.76105 * 38.30622 * 13 11 10 36 36 H 1.09004 * 110.91458 * 275.00925 * 13 11 10 37 37 H 1.09001 * 110.49178 * 203.37618 * 14 13 11 38 38 H 1.09005 * 110.48993 * 80.73635 * 14 13 11 39 39 H 1.09000 * 110.03243 * 264.32859 * 15 14 13 40 40 H 1.08997 * 110.07367 * 142.91636 * 15 14 13 41 41 H 0.97000 * 120.00427 * 266.45619 * 18 16 15 42 42 H 1.07997 * 120.09432 * 359.97438 * 22 21 19 43 43 H 1.08000 * 120.87590 * 180.02562 * 23 22 21 44 44 H 1.08003 * 120.17000 * 0.02562 * 25 24 23 45 45 H 1.08000 * 119.54245 * 180.02562 * 26 25 24 46 46 H 1.08009 * 119.45182 * 179.97438 * 27 26 25 47 47 H 1.07995 * 120.13836 * 179.73967 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 6 1.0639 -4.8197 0.0001 12 1 0.3422 -4.7054 0.8089 13 6 0.3381 -4.9130 -1.3650 14 6 -0.1125 -6.3941 -1.4120 15 6 1.0593 -7.1666 -0.7718 16 6 1.8073 -6.1655 0.1260 17 1 2.8375 -6.0571 -0.2132 18 7 1.7832 -6.6238 1.5173 19 6 2.7268 -7.4773 1.9621 20 8 3.5976 -7.8662 1.2093 21 6 2.7020 -7.9415 3.3701 22 6 3.6916 -8.8303 3.8160 23 6 3.6797 -9.2656 5.1097 24 6 2.6600 -8.7989 5.9602 25 6 2.5868 -9.2058 7.3021 26 6 1.5861 -8.7342 8.0954 27 6 0.6309 -7.8506 7.5941 28 6 0.6669 -7.4383 6.2987 29 6 1.6896 -7.8992 5.4473 30 7 1.7497 -7.5103 4.1739 31 1 -0.4849 0.8401 0.0004 32 1 0.3557 -2.3880 0.0002 33 1 2.6848 -3.7144 0.8895 34 1 2.6847 -3.7145 -0.8905 35 1 1.0237 -4.6917 -2.1830 36 1 -0.5235 -4.2460 -1.3940 37 1 -0.2628 -6.7148 -2.4429 38 1 -1.0243 -6.5342 -0.8313 39 1 1.7263 -7.5433 -1.5473 40 1 0.6791 -7.9939 -0.1725 41 1 1.0882 -6.3131 2.1183 42 1 4.4601 -9.1697 3.1374 43 1 4.4334 -9.9495 5.4712 44 1 3.3207 -9.8895 7.7028 45 1 1.5317 -9.0480 9.1273 46 1 -0.1532 -7.4915 8.2443 47 1 -0.0832 -6.7569 5.9255 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568541900.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:38 Heat of formation + Delta-G solvation = 0.085464 kcal Electronic energy + Delta-G solvation = -28212.655751 eV Core-core repulsion = 24358.891685 eV Total energy + Delta-G solvation = -3853.764065 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.09330 -40.94751 -39.28616 -37.82489 -36.35505 -35.02539 -34.35221 -33.31716 -31.80721 -31.03607 -30.23794 -28.79678 -26.54110 -25.93783 -24.69798 -23.88949 -23.10071 -22.40960 -21.39909 -20.95929 -19.51451 -19.02352 -18.77457 -18.19164 -17.55727 -16.64155 -16.49887 -16.41779 -15.95548 -15.81345 -15.48880 -15.26981 -15.17352 -15.07680 -15.01569 -14.74999 -14.48689 -14.21887 -14.05386 -13.50997 -13.18214 -12.96146 -12.80848 -12.67424 -12.64161 -12.50043 -12.46097 -12.21761 -11.99189 -11.89996 -11.67328 -11.65925 -11.61434 -11.45611 -11.40630 -10.94356 -10.63945 -10.18691 -9.82683 -9.29091 -9.01979 -7.96609 -5.25498 -0.86814 -0.36306 0.90370 1.35468 1.45317 1.48527 1.54749 1.96909 2.19368 2.54298 2.91863 3.06698 3.35762 3.41782 3.55609 3.63745 3.66450 3.81641 3.86147 3.89924 4.11988 4.15887 4.23514 4.36525 4.37909 4.44494 4.49682 4.51087 4.55810 4.62643 4.71747 4.76387 4.89067 4.95742 4.98308 5.02129 5.05969 5.08400 5.15908 5.22007 5.31140 5.36323 5.42824 5.44402 5.48236 5.48386 5.53862 5.84905 6.25349 6.30690 6.64751 7.03387 7.32204 8.06315 8.32545 9.26480 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010262 B = 0.002647 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2727.886021 B =10574.098369 C =12066.064763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.071 4.071 3 Si 0.973 3.027 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.251 4.251 8 H 0.069 0.931 9 N -0.739 5.739 10 C 0.163 3.837 11 C -0.092 4.092 12 H 0.078 0.922 13 C -0.109 4.109 14 C -0.111 4.111 15 C -0.123 4.123 16 C 0.150 3.850 17 H 0.078 0.922 18 N -0.693 5.693 19 C 0.566 3.434 20 O -0.561 6.561 21 C 0.095 3.905 22 C -0.143 4.143 23 C -0.047 4.047 24 C -0.101 4.101 25 C -0.100 4.100 26 C -0.104 4.104 27 C -0.094 4.094 28 C -0.112 4.112 29 C 0.096 3.904 30 N -0.462 5.462 31 H 0.253 0.747 32 H 0.377 0.623 33 H 0.005 0.995 34 H 0.020 0.980 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.413 0.587 42 H 0.154 0.846 43 H 0.186 0.814 44 H 0.166 0.834 45 H 0.164 0.836 46 H 0.158 0.842 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.983 -25.390 15.451 29.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.264 4.264 3 Si 0.802 3.198 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.382 4.382 8 H 0.087 0.913 9 N -0.382 5.382 10 C 0.037 3.963 11 C -0.111 4.111 12 H 0.097 0.903 13 C -0.147 4.147 14 C -0.149 4.149 15 C -0.161 4.161 16 C 0.045 3.955 17 H 0.096 0.904 18 N -0.343 5.343 19 C 0.351 3.649 20 O -0.440 6.440 21 C -0.057 4.057 22 C -0.163 4.163 23 C -0.072 4.072 24 C -0.104 4.104 25 C -0.119 4.119 26 C -0.122 4.122 27 C -0.113 4.113 28 C -0.130 4.130 29 C -0.028 4.028 30 N -0.174 5.174 31 H 0.061 0.939 32 H 0.209 0.791 33 H 0.023 0.977 34 H 0.037 0.963 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.102 0.898 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.251 0.749 42 H 0.172 0.828 43 H 0.203 0.797 44 H 0.183 0.817 45 H 0.182 0.818 46 H 0.176 0.824 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.064 -24.951 14.626 28.995 hybrid contribution 0.343 1.059 0.248 1.140 sum 2.406 -23.892 14.874 28.246 Atomic orbital electron populations 1.69800 1.06453 1.26227 1.59167 1.25540 0.96454 1.00953 1.03449 0.85224 0.77277 0.79199 0.78130 1.20396 1.21724 1.20607 1.19560 0.91334 0.85547 1.41786 0.91261 1.42450 1.05609 1.00767 1.89331 1.20755 0.93588 0.85062 0.96927 1.22272 0.97009 0.92209 0.99600 0.90336 1.22399 0.99687 0.97248 0.95347 1.22321 0.97567 0.93291 1.01705 1.22477 0.97597 0.97393 0.98653 1.21659 1.00360 0.92881 0.80606 0.90415 1.46049 1.29936 1.45397 1.12955 1.18236 0.81337 0.79018 0.86308 1.90739 1.37649 1.58431 1.57142 1.21254 0.93876 0.97162 0.93437 1.21847 0.99154 0.97251 0.98078 1.21892 0.96788 0.97034 0.91534 1.19320 0.96097 0.97949 0.96988 1.21411 0.99752 0.99976 0.90739 1.21481 0.93358 0.95567 1.01760 1.21357 0.99434 0.96036 0.94502 1.21080 0.97313 1.00664 0.93986 1.19279 0.96738 0.96704 0.90059 1.67730 1.22386 1.22527 1.04744 0.93861 0.79109 0.97679 0.96253 0.91714 0.91954 0.89788 0.90785 0.90568 0.91134 0.74941 0.82844 0.79699 0.81675 0.81830 0.82436 0.84681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.83 13.06 21.65 0.28 -59.55 16 2 C -0.07 -4.20 5.50 84.86 0.47 -3.74 16 3 Si 0.97 47.24 29.55 68.60 2.03 49.27 16 4 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 5 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 6 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 7 C -0.25 -14.58 9.99 84.03 0.84 -13.74 16 8 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 9 N -0.74 -39.01 5.49 -343.45 -1.89 -40.89 16 10 C 0.16 7.04 5.54 86.38 0.48 7.52 16 11 C -0.09 -3.09 2.58 -9.72 -0.03 -3.11 16 12 H 0.08 2.69 7.73 -2.39 -0.02 2.67 16 13 C -0.11 -3.34 6.19 31.88 0.20 -3.14 16 14 C -0.11 -2.62 6.83 31.67 0.22 -2.40 16 15 C -0.12 -3.07 6.59 31.32 0.21 -2.87 16 16 C 0.15 4.51 2.79 45.71 0.13 4.64 16 17 H 0.08 2.62 7.30 -2.39 -0.02 2.60 16 18 N -0.69 -20.51 4.98 -441.56 -2.20 -22.71 16 19 C 0.57 17.60 7.80 86.91 0.68 18.28 16 20 O -0.56 -19.84 15.96 -3.72 -0.06 -19.90 16 21 C 0.10 2.62 6.75 42.31 0.29 2.91 16 22 C -0.14 -3.10 9.54 22.36 0.21 -2.89 16 23 C -0.05 -0.73 9.88 22.48 0.22 -0.51 16 24 C -0.10 -1.79 5.75 -21.22 -0.12 -1.91 16 25 C -0.10 -1.06 9.77 22.31 0.22 -0.84 16 26 C -0.10 -0.93 9.96 22.07 0.22 -0.71 16 27 C -0.09 -1.12 9.94 22.04 0.22 -0.90 16 28 C -0.11 -2.09 9.99 22.38 0.22 -1.87 16 29 C 0.10 2.21 6.61 40.47 0.27 2.47 16 30 N -0.46 -12.55 9.47 -177.76 -1.68 -14.24 16 31 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 32 H 0.38 20.72 7.64 -92.71 -0.71 20.02 16 33 H 0.01 0.24 8.14 -2.38 -0.02 0.22 16 34 H 0.02 0.85 8.02 -2.39 -0.02 0.83 16 35 H 0.06 2.06 7.97 -2.39 -0.02 2.04 16 36 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 37 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.07 1.62 8.14 -2.38 -0.02 1.61 16 39 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.07 1.71 7.92 -2.39 -0.02 1.69 16 41 H 0.41 11.74 7.64 -92.71 -0.71 11.03 16 42 H 0.15 3.11 7.60 -2.91 -0.02 3.08 16 43 H 0.19 1.25 8.06 -2.91 -0.02 1.23 16 44 H 0.17 0.61 8.06 -2.91 -0.02 0.58 16 45 H 0.16 0.35 8.06 -2.91 -0.02 0.33 16 46 H 0.16 1.01 8.06 -2.91 -0.02 0.99 16 47 H 0.14 2.49 8.06 -2.91 -0.02 2.47 16 Total: -1.00 -74.74 390.78 1.00 -73.74 By element: Atomic # 1 Polarization: 37.50 SS G_CDS: -0.42 Total: 37.09 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: 4.93 Total: -2.81 kcal Atomic # 7 Polarization: -131.91 SS G_CDS: -5.49 Total: -137.39 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.06 Total: -19.90 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 2.03 Total: 49.27 kcal Total: -74.74 1.00 -73.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568541900.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.830 kcal (2) G-P(sol) polarization free energy of solvation -74.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds