Wall clock time and date at job start Tue Mar 31 2020 23:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 119.99909 * 2 1 4 4 H 1.48502 * 109.47213 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47208 * 300.00248 * 3 2 1 6 6 H 1.48505 * 109.46867 * 60.00365 * 3 2 1 7 7 C 1.38816 * 119.99984 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99850 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00018 * 0.02562 * 7 2 1 10 10 C 1.46506 * 120.00014 * 185.77389 * 9 7 2 11 11 C 1.52997 * 112.90439 * 292.59549 * 10 9 7 12 12 N 1.46500 * 109.47369 * 311.32063 * 11 10 9 13 13 C 1.34779 * 120.00319 * 175.67929 * 12 11 10 14 14 O 1.21277 * 119.99621 * 359.97438 * 13 12 11 15 15 C 1.50697 * 120.00100 * 179.97438 * 13 12 11 16 16 C 1.50696 * 109.47284 * 179.97438 * 15 13 12 17 17 C 1.36214 * 120.66946 * 264.72478 * 16 15 13 18 18 N 1.32572 * 121.88004 * 179.74550 * 17 16 15 19 19 C 1.31272 * 122.77051 * 0.55049 * 18 17 16 20 20 C 1.40394 * 119.88348 * 359.72329 * 19 18 17 21 21 C 1.40381 * 122.07739 * 179.97438 * 20 19 18 22 22 C 1.36166 * 119.51457 * 180.02562 * 21 20 19 23 23 C 1.39381 * 121.09059 * 0.04193 * 22 21 20 24 24 C 1.36212 * 121.02429 * 359.97438 * 23 22 21 25 25 C 1.40237 * 119.47754 * 0.02562 * 24 23 22 26 26 C 1.53777 * 113.61242 * 63.84552 * 10 9 7 27 27 C 1.53777 * 87.08128 * 89.11763 * 26 10 9 28 28 C 1.53780 * 113.61480 * 161.34397 * 10 9 7 29 29 H 0.96993 * 120.00297 * 359.97438 * 1 2 3 30 30 H 0.97005 * 120.00385 * 5.77274 * 9 7 2 31 31 H 1.09003 * 109.47602 * 71.32082 * 11 10 9 32 32 H 1.08999 * 109.46922 * 191.32019 * 11 10 9 33 33 H 0.97002 * 119.99722 * 355.67902 * 12 11 10 34 34 H 1.09001 * 109.47380 * 300.00316 * 15 13 12 35 35 H 1.09004 * 109.46923 * 60.00088 * 15 13 12 36 36 H 1.08004 * 119.05916 * 359.97438 * 17 16 15 37 37 H 1.08003 * 120.05918 * 179.75365 * 19 18 17 38 38 H 1.08001 * 120.24395 * 0.04931 * 21 20 19 39 39 H 1.08000 * 119.46006 * 180.02562 * 22 21 20 40 40 H 1.07999 * 119.49186 * 179.97438 * 23 22 21 41 41 H 1.08001 * 120.26155 * 179.97438 * 24 23 22 42 42 H 1.09000 * 113.61571 * 334.56644 * 26 10 9 43 43 H 1.09000 * 113.61346 * 203.66726 * 26 10 9 44 44 H 1.09002 * 113.61200 * 139.97728 * 27 26 10 45 45 H 1.08996 * 113.61231 * 270.88098 * 27 26 10 46 46 H 1.08999 * 113.60997 * 156.33513 * 28 10 9 47 47 H 1.09002 * 113.69108 * 25.44354 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3963 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0525 -3.6537 0.1255 11 6 2.9296 -3.9613 -1.0898 12 7 2.1468 -3.7815 -2.3151 13 6 2.7391 -3.9131 -3.5186 14 8 3.9201 -4.1800 -3.5872 15 6 1.9337 -3.7287 -4.7789 16 6 2.8247 -3.9272 -5.9779 17 6 3.4087 -2.8618 -6.5936 18 7 4.2005 -3.0092 -7.6467 19 6 4.4690 -4.1803 -8.1754 20 6 3.9126 -5.3431 -7.6191 21 6 4.1683 -6.6183 -8.1473 22 6 3.6005 -7.7112 -7.5665 23 6 2.7681 -7.5852 -6.4557 24 6 2.4973 -6.3641 -5.9163 25 6 3.0644 -5.2159 -6.4880 26 6 2.7839 -3.8117 1.4689 27 6 1.4889 -4.4397 2.0105 28 6 1.1655 -4.8326 0.5593 29 1 -0.4850 0.8400 0.0004 30 1 0.3593 -2.3902 -0.0865 31 1 3.7840 -3.2845 -1.1020 32 1 3.2824 -4.9909 -1.0319 33 1 1.2023 -3.5676 -2.2601 34 1 1.1240 -4.4580 -4.8027 35 1 1.5166 -2.7219 -4.7994 36 1 3.2244 -1.8688 -6.2107 37 1 5.1174 -4.2493 -9.0364 38 1 4.8110 -6.7318 -9.0079 39 1 3.7982 -8.6919 -7.9734 40 1 2.3311 -8.4694 -6.0158 41 1 1.8501 -6.2806 -5.0557 42 1 3.0399 -2.8632 1.9409 43 1 3.6231 -4.5063 1.4301 44 1 1.6589 -5.2935 2.6664 45 1 0.7941 -3.7130 2.4313 46 1 1.5622 -5.8063 0.2718 47 1 0.1146 -4.7096 0.2975 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570107982.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:30 Heat of formation + Delta-G solvation = 47.422660 kcal Electronic energy + Delta-G solvation = -28907.936394 eV Core-core repulsion = 25056.225024 eV Total energy + Delta-G solvation = -3851.711371 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.06967 -39.45765 -38.42504 -37.39899 -34.22133 -33.86341 -33.25977 -31.31187 -30.51840 -30.02868 -28.53067 -26.60971 -25.29472 -24.10340 -23.79990 -23.60792 -22.08782 -21.25491 -19.90813 -18.25535 -18.06551 -17.67940 -17.17424 -16.80071 -16.49511 -15.71634 -15.25464 -14.91083 -14.68417 -14.49966 -14.41456 -14.19935 -13.94086 -13.80033 -13.41593 -13.33062 -13.10178 -12.92764 -12.69976 -12.28355 -12.21361 -11.98659 -11.82263 -11.59451 -11.24174 -11.15977 -11.06291 -10.86158 -10.39241 -10.21273 -10.19025 -10.17120 -9.74319 -9.55424 -9.50961 -9.43235 -9.16676 -8.93628 -8.48522 -8.09749 -7.10241 -5.87635 -3.17711 0.26366 0.83059 1.81172 2.95845 3.01265 3.37984 3.46066 3.47074 3.62974 4.06844 4.27039 4.45470 4.50431 4.60050 4.64175 4.76746 4.87991 5.03634 5.05580 5.14348 5.16333 5.22170 5.25326 5.31201 5.44718 5.46631 5.48516 5.57912 5.65886 5.73099 5.78703 5.91164 5.96096 6.02717 6.10355 6.17554 6.23095 6.31541 6.35235 6.36846 6.46417 6.54836 6.71436 6.72390 6.84402 6.97665 7.07023 7.67649 7.94020 8.01040 8.30902 8.65384 9.42629 9.95012 10.30623 11.34209 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012575 B = 0.003108 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.020930 B = 9005.942591 C =10616.346817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.008 4.008 3 Si 0.903 3.097 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.233 4.233 8 H 0.070 0.930 9 N -0.699 5.699 10 C 0.173 3.827 11 C 0.122 3.878 12 N -0.700 5.700 13 C 0.511 3.489 14 O -0.548 6.548 15 C -0.103 4.103 16 C -0.088 4.088 17 C 0.086 3.914 18 N -0.482 5.482 19 C 0.136 3.864 20 C -0.112 4.112 21 C -0.089 4.089 22 C -0.123 4.123 23 C -0.102 4.102 24 C -0.104 4.104 25 C -0.008 4.008 26 C -0.150 4.150 27 C -0.128 4.128 28 C -0.144 4.144 29 H 0.255 0.745 30 H 0.386 0.614 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.403 0.597 34 H 0.102 0.898 35 H 0.110 0.890 36 H 0.153 0.847 37 H 0.161 0.839 38 H 0.131 0.869 39 H 0.124 0.876 40 H 0.125 0.875 41 H 0.128 0.872 42 H 0.075 0.925 43 H 0.067 0.933 44 H 0.053 0.947 45 H 0.082 0.918 46 H 0.076 0.924 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.297 -15.940 -12.535 20.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.204 4.204 3 Si 0.734 3.266 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.364 4.364 8 H 0.088 0.912 9 N -0.340 5.340 10 C 0.080 3.920 11 C -0.004 4.004 12 N -0.350 5.350 13 C 0.296 3.704 14 O -0.426 6.426 15 C -0.144 4.144 16 C -0.090 4.090 17 C -0.057 4.057 18 N -0.189 5.189 19 C -0.036 4.036 20 C -0.114 4.114 21 C -0.108 4.108 22 C -0.141 4.141 23 C -0.121 4.121 24 C -0.122 4.122 25 C -0.014 4.014 26 C -0.190 4.190 27 C -0.166 4.166 28 C -0.182 4.182 29 H 0.065 0.935 30 H 0.221 0.779 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.239 0.761 34 H 0.120 0.880 35 H 0.129 0.871 36 H 0.170 0.830 37 H 0.178 0.822 38 H 0.149 0.851 39 H 0.142 0.858 40 H 0.143 0.857 41 H 0.146 0.854 42 H 0.094 0.906 43 H 0.086 0.914 44 H 0.072 0.928 45 H 0.100 0.900 46 H 0.094 0.906 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.543 -15.108 -12.801 20.116 hybrid contribution -0.632 0.420 0.550 0.937 sum 2.911 -14.688 -12.251 19.346 Atomic orbital electron populations 1.69653 1.05025 1.25676 1.57512 1.24712 0.95458 0.97597 1.02657 0.86183 0.79026 0.84214 0.77196 1.20506 1.21845 1.21864 1.19128 0.91045 0.83532 1.42665 0.91184 1.42065 1.05969 0.99031 1.86944 1.20832 0.92455 0.87661 0.91077 1.21792 0.95183 0.99205 0.84237 1.45718 1.14053 1.70182 1.05012 1.20252 0.87953 0.77484 0.84716 1.90693 1.15907 1.48642 1.87350 1.20621 0.97805 1.05579 0.90390 1.20047 0.99247 0.93170 0.96539 1.22081 0.92843 0.99031 0.91729 1.67418 1.13518 1.27201 1.10771 1.23139 0.95934 0.86699 0.97782 1.19003 0.99701 0.95606 0.97063 1.20948 0.99103 0.91228 0.99570 1.20890 0.97800 0.98886 0.96501 1.20957 0.97658 0.97607 0.95918 1.20975 0.99876 0.91791 0.99545 1.17969 0.95673 0.93510 0.94199 1.23277 0.96135 1.00983 0.98618 1.22628 0.98706 0.99700 0.95560 1.23182 1.00018 0.97683 0.97275 0.93517 0.77914 0.91891 0.92902 0.76144 0.87963 0.87133 0.82957 0.82196 0.85093 0.85753 0.85693 0.85389 0.90604 0.91430 0.92804 0.89966 0.90570 0.91703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.20 13.07 55.49 0.73 -25.47 16 2 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 3 Si 0.90 21.84 29.55 -169.99 -5.02 16.81 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 7 C -0.23 -5.94 9.23 -15.06 -0.14 -6.07 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 N -0.70 -15.36 4.56 -46.48 -0.21 -15.57 16 10 C 0.17 3.07 0.91 -131.01 -0.12 2.95 16 11 C 0.12 2.16 5.06 -4.04 -0.02 2.14 16 12 N -0.70 -11.49 5.39 -60.30 -0.32 -11.82 16 13 C 0.51 8.47 7.82 -10.99 -0.09 8.38 16 14 O -0.55 -11.13 16.03 5.56 0.09 -11.05 16 15 C -0.10 -1.33 5.31 -29.04 -0.15 -1.48 16 16 C -0.09 -1.23 4.40 -104.44 -0.46 -1.69 16 17 C 0.09 1.26 10.72 -17.96 -0.19 1.07 16 18 N -0.48 -6.99 10.30 -13.15 -0.14 -7.13 16 19 C 0.14 1.64 11.05 -16.98 -0.19 1.45 16 20 C -0.11 -1.36 5.74 -106.86 -0.61 -1.98 16 21 C -0.09 -0.83 9.81 -39.52 -0.39 -1.22 16 22 C -0.12 -1.08 9.94 -39.90 -0.40 -1.47 16 23 C -0.10 -0.98 9.95 -39.89 -0.40 -1.38 16 24 C -0.10 -1.21 9.33 -39.56 -0.37 -1.58 16 25 C -0.01 -0.11 5.75 -106.81 -0.61 -0.73 16 26 C -0.15 -2.55 7.27 -25.92 -0.19 -2.74 16 27 C -0.13 -1.98 7.99 -25.92 -0.21 -2.19 16 28 C -0.14 -2.14 7.37 -25.92 -0.19 -2.33 16 29 H 0.25 7.05 8.31 -40.82 -0.34 6.72 16 30 H 0.39 9.02 7.89 -40.82 -0.32 8.70 16 31 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.05 0.87 7.94 -51.93 -0.41 0.46 16 33 H 0.40 6.30 8.11 -40.82 -0.33 5.97 16 34 H 0.10 1.04 6.83 -51.93 -0.35 0.68 16 35 H 0.11 1.30 8.05 -51.93 -0.42 0.89 16 36 H 0.15 2.05 8.05 -52.48 -0.42 1.63 16 37 H 0.16 1.34 8.06 -52.48 -0.42 0.92 16 38 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 39 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 40 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 41 H 0.13 1.36 6.65 -52.49 -0.35 1.01 16 42 H 0.08 1.47 7.79 -51.93 -0.40 1.06 16 43 H 0.07 1.02 8.10 -51.93 -0.42 0.60 16 44 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 46 H 0.08 1.00 7.96 -51.93 -0.41 0.58 16 47 H 0.06 0.96 8.10 -51.93 -0.42 0.54 16 LS Contribution 391.63 15.07 5.90 5.90 Total: -1.00 -32.18 391.63 -10.57 -42.75 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: -6.77 Total: 14.76 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: -4.82 Total: -9.19 kcal Atomic # 7 Polarization: -60.04 SS G_CDS: 0.05 Total: -59.99 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.09 Total: -11.05 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.18 -10.57 -42.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570107982.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.173 kcal (2) G-P(sol) polarization free energy of solvation -32.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds