Wall clock time and date at job start Tue Mar 31 2020 23:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86806 * 119.99708 * 2 1 4 4 H 1.48507 * 109.47080 * 266.66420 * 3 2 1 5 5 H 1.48499 * 109.47176 * 26.66142 * 3 2 1 6 6 H 1.48499 * 109.47238 * 146.66090 * 3 2 1 7 7 C 1.38809 * 120.00525 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99584 * 343.46512 * 7 2 1 9 9 N 1.36934 * 120.00209 * 163.45741 * 7 2 1 10 10 C 1.46663 * 121.29864 * 331.46216 * 9 7 2 11 11 C 1.50809 * 109.68794 * 224.46950 * 10 9 7 12 12 C 1.38838 * 117.81035 * 168.68426 * 11 10 9 13 13 C 1.37959 * 120.49866 * 178.86242 * 12 11 10 14 14 C 1.38267 * 119.72181 * 359.96794 * 13 12 11 15 15 C 1.37913 * 119.82602 * 0.26686 * 14 13 12 16 16 C 1.37661 * 122.33449 * 348.00768 * 11 10 9 17 17 C 1.50600 * 122.84737 * 2.15306 * 16 11 10 18 18 C 1.47220 * 121.32085 * 151.49709 * 9 7 2 19 19 H 1.09010 * 109.76555 * 235.51030 * 18 9 7 20 20 C 1.53004 * 109.76736 * 356.28920 * 18 9 7 21 21 N 1.46503 * 109.47129 * 303.48414 * 20 18 9 22 22 C 1.34773 * 119.99898 * 180.02562 * 21 20 18 23 23 O 1.21275 * 120.00093 * 0.02562 * 22 21 20 24 24 C 1.50703 * 119.99764 * 179.97438 * 22 21 20 25 25 C 1.50702 * 109.46806 * 179.97438 * 24 22 21 26 26 C 1.34847 * 125.89391 * 274.68768 * 25 24 22 27 27 C 1.40890 * 107.41793 * 179.88600 * 26 25 24 28 28 C 1.34846 * 107.41658 * 0.38364 * 27 26 25 29 29 N 1.36339 * 108.21995 * 359.76920 * 28 27 26 30 30 H 0.96995 * 125.63332 * 180.02562 * 29 28 27 31 31 H 0.97001 * 120.00036 * 359.97438 * 1 2 3 32 32 H 1.08996 * 109.38437 * 104.43239 * 10 9 7 33 33 H 1.08998 * 109.47950 * 344.56373 * 10 9 7 34 34 H 1.07993 * 119.74921 * 358.84055 * 12 11 10 35 35 H 1.07997 * 120.14148 * 179.97438 * 13 12 11 36 36 H 1.07998 * 120.08950 * 180.28402 * 14 13 12 37 37 H 1.07995 * 119.71246 * 179.73047 * 15 14 13 38 38 H 1.09000 * 109.20151 * 99.72865 * 17 16 11 39 39 H 1.08993 * 109.20034 * 219.01919 * 17 16 11 40 40 H 1.08991 * 109.47114 * 63.48228 * 20 18 9 41 41 H 1.09001 * 109.46870 * 183.48424 * 20 18 9 42 42 H 0.97004 * 119.99945 * 359.97438 * 21 20 18 43 43 H 1.09000 * 109.47303 * 299.99734 * 24 22 21 44 44 H 1.09001 * 109.47200 * 60.00338 * 24 22 21 45 45 H 1.08005 * 126.28734 * 0.02944 * 26 25 24 46 46 H 1.08009 * 126.28824 * 180.12975 * 27 26 25 47 47 H 1.08000 * 125.89001 * 179.72961 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.5681 2.0058 -1.3978 5 1 1.4140 2.6721 0.6282 6 1 3.5106 1.4618 0.7695 7 6 2.0103 -1.2021 0.0005 8 1 1.5038 -2.1179 0.2671 9 7 3.3371 -1.2267 -0.3371 10 6 3.9080 -0.2364 -1.2561 11 6 4.8081 -0.9257 -2.2506 12 6 5.2481 -0.1914 -3.3436 13 6 6.0922 -0.7598 -4.2751 14 6 6.5033 -2.0705 -4.1180 15 6 6.0629 -2.8024 -3.0352 16 6 5.2080 -2.2341 -2.0983 17 6 4.7466 -3.1018 -0.9571 18 6 4.2465 -2.2484 0.2073 19 1 5.0908 -1.7658 0.6999 20 6 3.4959 -3.1285 1.2089 21 7 2.9175 -2.2878 2.2601 22 6 2.2075 -2.8500 3.2582 23 8 2.0477 -4.0518 3.2864 24 6 1.6131 -1.9852 4.3398 25 6 0.8736 -2.8520 5.3262 26 6 -0.4029 -3.2707 5.2093 27 6 -0.6945 -4.0562 6.3419 28 6 0.4121 -4.0806 7.1120 29 7 1.3780 -3.3432 6.4939 30 1 2.2757 -3.1932 6.8291 31 1 -0.4850 0.8401 0.0004 32 1 4.4859 0.4929 -0.6885 33 1 3.1037 0.2728 -1.7870 34 1 4.9269 0.8324 -3.4657 35 1 6.4306 -0.1834 -5.1233 36 1 7.1677 -2.5200 -4.8411 37 1 6.3817 -3.8274 -2.9166 38 1 3.9385 -3.7472 -1.3014 39 1 5.5779 -3.7196 -0.6177 40 1 2.6995 -3.6662 0.6945 41 1 4.1879 -3.8430 1.6547 42 1 3.0463 -1.3266 2.2382 43 1 2.4097 -1.4474 4.8539 44 1 0.9209 -1.2706 3.8944 45 1 -1.0769 -3.0470 4.3956 46 1 -1.6334 -4.5452 6.5562 47 1 0.5154 -4.5950 8.0561 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570271094.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:30 Heat of formation + Delta-G solvation = 45.087066 kcal Electronic energy + Delta-G solvation = -29335.244283 eV Core-core repulsion = 25483.431634 eV Total energy + Delta-G solvation = -3851.812650 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.01539 -41.03662 -40.18586 -38.20633 -35.36939 -34.52471 -33.41690 -32.88621 -31.88495 -31.77605 -30.77085 -27.92559 -27.31197 -26.18769 -24.90907 -22.99487 -22.58445 -21.68873 -21.38004 -21.00045 -20.71546 -18.78386 -18.28512 -17.89115 -17.55743 -16.91161 -16.74831 -16.51465 -16.01844 -15.80689 -15.72822 -15.40201 -15.01701 -14.57705 -14.44864 -14.30042 -14.18408 -14.14923 -14.07090 -13.90576 -13.77936 -13.30396 -13.16703 -13.07270 -12.85739 -12.73097 -12.52452 -12.39470 -12.22977 -12.14029 -11.81761 -11.52307 -11.40832 -10.82419 -10.72082 -9.81910 -9.69436 -9.63273 -9.38944 -8.90017 -8.88992 -8.07496 -5.46040 0.51746 0.53098 1.32826 1.34287 1.42521 1.51749 1.78954 2.10463 2.44772 2.46237 2.64984 2.89949 3.03626 3.28604 3.75908 3.84492 3.94295 4.09836 4.14410 4.16913 4.24282 4.33061 4.37172 4.40678 4.48133 4.52806 4.57842 4.59037 4.67221 4.70603 4.79347 4.83940 4.86149 4.88834 4.91775 5.17322 5.19346 5.36577 5.38095 5.45554 5.63028 5.64760 5.67148 5.79751 5.92935 6.10939 6.19599 6.23938 6.24141 6.74570 6.87585 6.89359 7.42206 7.62685 8.04376 9.11098 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015481 B = 0.003231 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.263283 B = 8663.826980 C = 9959.488943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.024 4.024 3 Si 0.934 3.066 4 H -0.284 1.284 5 H -0.316 1.316 6 H -0.249 1.249 7 C -0.224 4.224 8 H 0.057 0.943 9 N -0.612 5.612 10 C 0.159 3.841 11 C -0.107 4.107 12 C -0.137 4.137 13 C -0.125 4.125 14 C -0.125 4.125 15 C -0.126 4.126 16 C -0.077 4.077 17 C -0.087 4.087 18 C 0.163 3.837 19 H 0.065 0.935 20 C 0.143 3.857 21 N -0.694 5.694 22 C 0.510 3.490 23 O -0.587 6.587 24 C -0.067 4.067 25 C 0.028 3.972 26 C -0.218 4.218 27 C -0.228 4.228 28 C -0.002 4.002 29 N -0.545 5.545 30 H 0.425 0.575 31 H 0.259 0.741 32 H 0.043 0.957 33 H 0.058 0.942 34 H 0.119 0.881 35 H 0.145 0.855 36 H 0.150 0.850 37 H 0.142 0.858 38 H 0.064 0.936 39 H 0.103 0.897 40 H 0.036 0.964 41 H 0.081 0.919 42 H 0.410 0.590 43 H 0.130 0.870 44 H 0.109 0.891 45 H 0.111 0.889 46 H 0.144 0.856 47 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.945 -3.036 5.006 15.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.219 4.219 3 Si 0.763 3.237 4 H -0.212 1.212 5 H -0.245 1.245 6 H -0.173 1.173 7 C -0.353 4.353 8 H 0.075 0.925 9 N -0.337 5.337 10 C 0.034 3.966 11 C -0.109 4.109 12 C -0.156 4.156 13 C -0.143 4.143 14 C -0.143 4.143 15 C -0.143 4.143 16 C -0.077 4.077 17 C -0.126 4.126 18 C 0.058 3.942 19 H 0.083 0.917 20 C 0.019 3.981 21 N -0.344 5.344 22 C 0.297 3.703 23 O -0.468 6.468 24 C -0.107 4.107 25 C -0.086 4.086 26 C -0.243 4.243 27 C -0.253 4.253 28 C -0.134 4.134 29 N -0.141 5.141 30 H 0.264 0.736 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.137 0.863 35 H 0.163 0.837 36 H 0.168 0.832 37 H 0.160 0.840 38 H 0.082 0.918 39 H 0.121 0.879 40 H 0.054 0.946 41 H 0.099 0.901 42 H 0.246 0.754 43 H 0.148 0.852 44 H 0.127 0.873 45 H 0.129 0.871 46 H 0.162 0.838 47 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 13.850 -3.774 5.100 15.234 hybrid contribution -0.348 1.595 -0.413 1.684 sum 13.502 -2.179 4.686 14.457 Atomic orbital electron populations 1.69941 1.07385 1.26865 1.55847 1.25766 0.95478 1.00220 1.00430 0.86202 0.78690 0.80991 0.77788 1.21163 1.24493 1.17344 1.18573 0.83964 0.93012 1.39746 0.92522 1.44438 1.05818 1.33336 1.50087 1.20262 0.94554 0.91665 0.90094 1.20302 0.98477 0.95199 0.96908 1.21259 0.99225 1.00207 0.94913 1.21322 0.97649 0.96182 0.99156 1.21381 1.00413 0.94389 0.98109 1.21453 0.97673 1.00788 0.94430 1.19623 0.97234 0.93342 0.97489 1.20833 1.01129 0.97027 0.93600 1.20918 0.91884 0.89187 0.92234 0.91707 1.21165 0.96249 0.92771 0.87946 1.45809 1.52982 1.11688 1.23907 1.20823 0.77797 0.88438 0.83232 1.90641 1.61024 1.16853 1.78325 1.20098 1.01232 0.96503 0.92896 1.19588 0.94353 1.04450 0.90193 1.20830 0.96500 1.05818 1.01122 1.21122 1.00500 1.06736 0.96902 1.22312 0.88541 1.01320 1.01209 1.41860 1.14247 1.40769 1.17220 0.73622 0.93195 0.93942 0.92442 0.86317 0.83736 0.83250 0.84016 0.91755 0.87900 0.94551 0.90104 0.75386 0.85229 0.87316 0.87059 0.83817 0.78074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.11 13.97 21.65 0.30 -56.80 16 2 C -0.02 -1.28 5.30 84.86 0.45 -0.83 16 3 Si 0.93 42.63 24.17 68.60 1.66 44.29 16 4 H -0.28 -12.76 6.47 99.48 0.64 -12.12 16 5 H -0.32 -15.02 7.11 99.48 0.71 -14.31 16 6 H -0.25 -10.33 6.58 99.48 0.65 -9.67 16 7 C -0.22 -11.38 7.50 84.03 0.63 -10.75 16 8 H 0.06 3.31 6.40 -2.91 -0.02 3.29 16 9 N -0.61 -25.81 2.63 -680.42 -1.79 -27.61 16 10 C 0.16 6.42 3.97 85.64 0.34 6.76 16 11 C -0.11 -3.75 5.82 -19.82 -0.12 -3.87 16 12 C -0.14 -4.16 9.62 22.35 0.22 -3.95 16 13 C -0.13 -3.02 10.05 22.21 0.22 -2.79 16 14 C -0.13 -2.77 10.04 22.20 0.22 -2.55 16 15 C -0.13 -3.11 9.59 22.37 0.21 -2.90 16 16 C -0.08 -2.38 5.76 -19.85 -0.11 -2.50 16 17 C -0.09 -2.59 5.21 29.74 0.16 -2.43 16 18 C 0.16 5.53 3.00 44.78 0.13 5.67 16 19 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 20 C 0.14 5.05 4.43 86.38 0.38 5.44 16 21 N -0.69 -25.10 4.08 -463.06 -1.89 -26.99 16 22 C 0.51 19.06 7.82 87.66 0.69 19.75 16 23 O -0.59 -26.07 16.03 -3.02 -0.05 -26.12 16 24 C -0.07 -2.04 6.24 29.10 0.18 -1.85 16 25 C 0.03 0.88 5.66 41.08 0.23 1.11 16 26 C -0.22 -7.70 10.76 22.14 0.24 -7.46 16 27 C -0.23 -6.66 10.86 22.14 0.24 -6.42 16 28 C 0.00 -0.06 11.94 83.21 0.99 0.94 16 29 N -0.54 -13.19 6.07 -182.77 -1.11 -14.30 16 30 H 0.43 7.24 8.96 -92.71 -0.83 6.41 16 31 H 0.26 14.97 8.31 -92.71 -0.77 14.19 16 32 H 0.04 1.67 6.36 -2.39 -0.02 1.66 16 33 H 0.06 2.62 5.11 -2.39 -0.01 2.60 16 34 H 0.12 3.40 8.05 -2.91 -0.02 3.38 16 35 H 0.14 2.59 8.06 -2.91 -0.02 2.57 16 36 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 37 H 0.14 2.72 8.05 -2.91 -0.02 2.70 16 38 H 0.06 2.11 8.03 -2.39 -0.02 2.09 16 39 H 0.10 2.33 8.10 -2.39 -0.02 2.31 16 40 H 0.04 1.53 7.25 -2.39 -0.02 1.52 16 41 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 42 H 0.41 14.68 7.47 -92.71 -0.69 13.99 16 43 H 0.13 2.83 8.14 -2.39 -0.02 2.81 16 44 H 0.11 3.56 8.14 -2.39 -0.02 3.54 16 45 H 0.11 4.27 8.06 -2.91 -0.02 4.24 16 46 H 0.14 3.63 8.06 -2.91 -0.02 3.60 16 47 H 0.20 2.81 8.06 -2.91 -0.02 2.78 16 Total: -1.00 -73.67 375.67 1.80 -71.87 By element: Atomic # 1 Polarization: 44.93 SS G_CDS: -0.63 Total: 44.30 kcal Atomic # 6 Polarization: -13.96 SS G_CDS: 5.31 Total: -8.65 kcal Atomic # 7 Polarization: -121.21 SS G_CDS: -4.49 Total: -125.70 kcal Atomic # 8 Polarization: -26.07 SS G_CDS: -0.05 Total: -26.12 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 1.66 Total: 44.29 kcal Total: -73.67 1.80 -71.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570271094.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.961 kcal (2) G-P(sol) polarization free energy of solvation -73.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds