Wall clock time and date at job start Tue Mar 31 2020 22:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 120.00042 * 2 1 4 4 H 1.48497 * 109.47402 * 264.56902 * 3 2 1 5 5 H 1.48502 * 109.46921 * 24.56920 * 3 2 1 6 6 H 1.48499 * 109.47083 * 144.56476 * 3 2 1 7 7 C 1.38816 * 119.99773 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00263 * 336.12882 * 7 2 1 9 9 N 1.36939 * 119.99314 * 156.12969 * 7 2 1 10 10 C 1.47424 * 125.64528 * 161.99384 * 9 7 2 11 11 C 1.54911 * 104.83124 * 155.90145 * 10 9 7 12 12 C 1.55154 * 101.58008 * 37.01245 * 11 10 9 13 13 H 1.08999 * 110.72229 * 83.04192 * 12 11 10 14 14 C 1.53004 * 110.71596 * 206.13532 * 12 11 10 15 15 C 1.53001 * 109.46792 * 182.55951 * 14 12 11 16 16 N 1.46505 * 109.46973 * 179.97438 * 15 14 12 17 17 C 1.34778 * 119.99821 * 179.97438 * 16 15 14 18 18 O 1.21537 * 120.00081 * 359.97438 * 17 16 15 19 19 C 1.47902 * 119.99467 * 179.97438 * 17 16 15 20 20 C 1.38894 * 121.11532 * 359.68475 * 19 17 16 21 21 C 1.39275 * 119.57554 * 179.68710 * 20 19 17 22 22 N 1.30991 * 121.88699 * 0.65261 * 21 20 19 23 23 C 1.33536 * 121.82766 * 359.64716 * 22 21 20 24 24 C 1.40703 * 120.96994 * 180.02562 * 23 22 21 25 25 C 1.36059 * 119.74557 * 179.97438 * 24 23 22 26 26 C 1.39360 * 121.05253 * 0.04317 * 25 24 23 27 27 C 1.36253 * 120.83632 * 359.97438 * 26 25 24 28 28 C 1.40104 * 119.64157 * 0.02562 * 27 26 25 29 29 C 1.47317 * 125.61813 * 342.21297 * 9 7 2 30 30 H 0.97003 * 120.00470 * 0.02562 * 1 2 3 31 31 H 1.09001 * 110.36971 * 37.06379 * 10 9 7 32 32 H 1.08998 * 110.46133 * 274.79303 * 10 9 7 33 33 H 1.09001 * 111.00470 * 278.93360 * 11 10 9 34 34 H 1.09005 * 111.03436 * 155.09914 * 11 10 9 35 35 H 1.08992 * 109.47361 * 62.55523 * 14 12 11 36 36 H 1.09004 * 109.47087 * 302.55521 * 14 12 11 37 37 H 1.09005 * 109.47251 * 59.99846 * 15 14 12 38 38 H 1.09000 * 109.47354 * 299.99354 * 15 14 12 39 39 H 0.97001 * 119.99712 * 359.97438 * 16 15 14 40 40 H 1.07995 * 120.21147 * 0.02562 * 20 19 17 41 41 H 1.08005 * 119.05537 * 180.32592 * 21 20 19 42 42 H 1.08002 * 120.13045 * 359.97438 * 24 23 22 43 43 H 1.07999 * 119.48054 * 180.02562 * 25 24 23 44 44 H 1.07996 * 119.58087 * 180.02562 * 26 25 24 45 45 H 1.08002 * 120.17532 * 180.02562 * 27 26 25 46 46 H 1.08997 * 110.06570 * 61.68594 * 29 9 7 47 47 H 1.09004 * 109.84812 * 300.42335 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6125 1.9802 -1.3937 5 1 1.3949 2.6830 0.5822 6 1 3.4856 1.4760 0.8117 7 6 2.0102 -1.2022 0.0005 8 1 1.5395 -2.0973 0.3794 9 7 3.2918 -1.2530 -0.4794 10 6 4.2678 -2.3247 -0.2109 11 6 5.2588 -2.2656 -1.4001 12 6 5.3540 -0.7374 -1.6505 13 1 6.0733 -0.2794 -0.9716 14 6 5.7273 -0.4497 -3.1062 15 6 5.8758 1.0600 -3.3057 16 7 6.2339 1.3354 -4.6993 17 6 6.4173 2.6062 -5.1094 18 8 6.2852 3.5235 -4.3232 19 6 6.7794 2.8841 -6.5162 20 6 6.9426 1.8532 -7.4325 21 6 7.2774 2.1519 -8.7510 22 7 7.4575 3.3842 -9.1570 23 6 7.3234 4.4246 -8.3307 24 6 7.5206 5.7412 -8.7862 25 6 7.3769 6.7829 -7.9229 26 6 7.0372 6.5689 -6.5884 27 6 6.8388 5.3079 -6.1117 28 6 6.9784 4.2117 -6.9729 29 6 3.9241 -0.2432 -1.3457 30 1 -0.4851 0.8400 -0.0004 31 1 3.7690 -3.2934 -0.1806 32 1 4.7899 -2.1383 0.7276 33 1 4.8541 -2.7800 -2.2718 34 1 6.2290 -2.6771 -1.1217 35 1 4.9446 -0.8279 -3.7636 36 1 6.6705 -0.9420 -3.3435 37 1 6.6586 1.4382 -2.6482 38 1 4.9327 1.5523 -3.0685 39 1 6.3389 0.6033 -5.3269 40 1 6.8054 0.8268 -7.1259 41 1 7.3971 1.3440 -9.4578 42 1 7.7850 5.9242 -9.8173 43 1 7.5289 7.7917 -8.2772 44 1 6.9289 7.4132 -5.9238 45 1 6.5754 5.1544 -5.0756 46 1 3.9655 0.7172 -0.8320 47 1 3.3599 -0.1458 -2.2733 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664726886.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:37 Heat of formation + Delta-G solvation = 28.046954 kcal Electronic energy + Delta-G solvation = -28230.395216 eV Core-core repulsion = 24377.843652 eV Total energy + Delta-G solvation = -3852.551564 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.19991 -40.56450 -39.63824 -38.13732 -36.65604 -34.93286 -34.52136 -33.13042 -31.59379 -31.27971 -30.67243 -28.71680 -26.73223 -25.82842 -24.62658 -24.23744 -23.33177 -22.11506 -21.89097 -21.09362 -19.24494 -19.02783 -18.69044 -18.42311 -17.78578 -17.06731 -16.77090 -16.54999 -16.24893 -15.84606 -15.60281 -15.50600 -15.40865 -15.05405 -14.87348 -14.74374 -14.30889 -14.19161 -14.18047 -13.93071 -13.60020 -13.19555 -12.94505 -12.83670 -12.75598 -12.68055 -12.42000 -12.36305 -12.17813 -11.83409 -11.77953 -11.61017 -11.45820 -11.42223 -11.17647 -10.78391 -10.39839 -10.32248 -9.85094 -9.34280 -9.08927 -8.24289 -5.46336 -1.00613 -0.26472 0.61094 1.23208 1.30428 1.39217 1.67019 1.84390 2.03685 2.34284 2.98721 3.04816 3.24289 3.33416 3.39830 3.58185 3.61249 3.66307 3.81633 3.83561 3.99092 4.13493 4.14040 4.19671 4.24409 4.37066 4.48764 4.50504 4.51956 4.58235 4.60811 4.71633 4.74439 4.85239 4.94013 5.01096 5.03130 5.08954 5.13154 5.20215 5.27192 5.29375 5.30319 5.44992 5.51265 5.52505 5.67319 5.83660 6.05815 6.32357 6.74719 6.77255 7.00110 7.52000 8.09343 8.96206 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015523 B = 0.002476 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.366126 B =11304.089953 C =12399.254563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.036 4.036 3 Si 0.946 3.054 4 H -0.281 1.281 5 H -0.311 1.311 6 H -0.276 1.276 7 C -0.230 4.230 8 H 0.064 0.936 9 N -0.632 5.632 10 C 0.118 3.882 11 C -0.105 4.105 12 C -0.090 4.090 13 H 0.088 0.912 14 C -0.104 4.104 15 C 0.116 3.884 16 N -0.699 5.699 17 C 0.553 3.447 18 O -0.566 6.566 19 C -0.095 4.095 20 C -0.116 4.116 21 C 0.126 3.874 22 N -0.475 5.475 23 C 0.101 3.899 24 C -0.105 4.105 25 C -0.095 4.095 26 C -0.115 4.115 27 C -0.134 4.134 28 C -0.088 4.088 29 C 0.115 3.885 30 H 0.262 0.738 31 H 0.046 0.954 32 H 0.028 0.972 33 H 0.080 0.920 34 H 0.109 0.891 35 H 0.078 0.922 36 H 0.116 0.884 37 H 0.071 0.929 38 H 0.037 0.963 39 H 0.420 0.580 40 H 0.184 0.816 41 H 0.209 0.791 42 H 0.154 0.846 43 H 0.164 0.836 44 H 0.147 0.853 45 H 0.147 0.853 46 H 0.002 0.998 47 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.881 4.161 -20.953 31.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.230 4.230 3 Si 0.778 3.222 4 H -0.208 1.208 5 H -0.240 1.240 6 H -0.203 1.203 7 C -0.359 4.359 8 H 0.082 0.918 9 N -0.359 5.359 10 C -0.007 4.007 11 C -0.143 4.143 12 C -0.109 4.109 13 H 0.106 0.894 14 C -0.141 4.141 15 C -0.008 4.008 16 N -0.352 5.352 17 C 0.341 3.659 18 O -0.446 6.446 19 C -0.107 4.107 20 C -0.136 4.136 21 C -0.047 4.047 22 N -0.184 5.184 23 C -0.020 4.020 24 C -0.124 4.124 25 C -0.114 4.114 26 C -0.133 4.133 27 C -0.152 4.152 28 C -0.091 4.091 29 C -0.010 4.010 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.046 0.954 33 H 0.099 0.901 34 H 0.128 0.872 35 H 0.097 0.903 36 H 0.135 0.865 37 H 0.089 0.911 38 H 0.055 0.945 39 H 0.259 0.741 40 H 0.201 0.799 41 H 0.225 0.775 42 H 0.172 0.828 43 H 0.182 0.818 44 H 0.164 0.836 45 H 0.164 0.836 46 H 0.020 0.980 47 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 22.800 5.120 -21.184 31.541 hybrid contribution -0.839 0.738 1.374 1.771 sum 21.961 5.857 -19.811 30.151 Atomic orbital electron populations 1.69964 1.06947 1.27067 1.56069 1.25508 0.95705 1.00221 1.01587 0.85949 0.77390 0.80986 0.77870 1.20776 1.24020 1.20251 1.18680 0.87394 0.94426 1.35431 0.91790 1.45095 1.10454 1.24428 1.55914 1.21927 0.90352 0.91175 0.97198 1.22738 0.99753 0.94006 0.97778 1.22107 0.93798 0.97554 0.97447 0.89396 1.21712 1.04538 0.92682 0.95195 1.21455 0.99874 0.97821 0.81654 1.45724 1.69431 1.07360 1.12644 1.18423 0.76886 0.83296 0.87336 1.90610 1.52818 1.44773 1.56398 1.20340 1.02305 0.94396 0.93620 1.22896 0.96134 1.00742 0.93845 1.23672 0.92239 0.94162 0.94577 1.67862 1.12914 1.00304 1.37276 1.19164 0.99319 0.94735 0.88742 1.21115 1.00193 0.89451 1.01600 1.21349 0.96667 1.00735 0.92652 1.21431 0.97823 0.97272 0.96762 1.22041 0.98645 0.92660 1.01841 1.18903 1.01257 0.93761 0.95173 1.21928 0.94654 0.91532 0.92872 0.92942 0.93566 0.95394 0.90102 0.87219 0.90303 0.86531 0.91054 0.94461 0.74099 0.79909 0.77476 0.82811 0.81831 0.83562 0.83607 0.98048 0.95743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.95 13.97 21.65 0.30 -61.65 16 2 C -0.04 -2.18 5.43 84.86 0.46 -1.72 16 3 Si 0.95 50.39 24.39 68.60 1.67 52.07 16 4 H -0.28 -14.49 6.82 99.48 0.68 -13.81 16 5 H -0.31 -16.73 7.11 99.48 0.71 -16.02 16 6 H -0.28 -14.27 6.88 99.48 0.68 -13.58 16 7 C -0.23 -13.55 10.56 84.03 0.89 -12.67 16 8 H 0.06 4.02 8.06 -2.91 -0.02 4.00 16 9 N -0.63 -30.42 3.22 -691.23 -2.22 -32.64 16 10 C 0.12 4.27 7.23 86.86 0.63 4.89 16 11 C -0.10 -2.56 6.54 31.99 0.21 -2.36 16 12 C -0.09 -2.43 2.95 -9.60 -0.03 -2.46 16 13 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 14 C -0.10 -1.96 4.72 30.60 0.14 -1.82 16 15 C 0.12 2.75 5.54 86.38 0.48 3.23 16 16 N -0.70 -13.38 5.51 -465.91 -2.57 -15.94 16 17 C 0.55 14.08 7.77 86.80 0.67 14.76 16 18 O -0.57 -19.18 13.49 -3.83 -0.05 -19.23 16 19 C -0.10 -2.06 5.94 -19.68 -0.12 -2.18 16 20 C -0.12 -1.47 9.61 22.68 0.22 -1.25 16 21 C 0.13 1.59 11.14 85.07 0.95 2.54 16 22 N -0.47 -9.23 10.30 -188.73 -1.94 -11.17 16 23 C 0.10 2.25 6.61 40.34 0.27 2.51 16 24 C -0.11 -1.88 9.98 22.37 0.22 -1.66 16 25 C -0.09 -1.46 9.94 22.03 0.22 -1.24 16 26 C -0.12 -2.23 9.96 22.08 0.22 -2.01 16 27 C -0.13 -3.43 9.25 22.26 0.21 -3.22 16 28 C -0.09 -2.19 5.76 -21.09 -0.12 -2.31 16 29 C 0.11 4.80 4.02 86.67 0.35 5.14 16 30 H 0.26 16.22 8.31 -92.71 -0.77 15.45 16 31 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.08 1.84 8.05 -2.39 -0.02 1.83 16 34 H 0.11 1.85 8.14 -2.38 -0.02 1.83 16 35 H 0.08 1.50 8.00 -2.39 -0.02 1.48 16 36 H 0.12 1.27 8.14 -2.38 -0.02 1.25 16 37 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 38 H 0.04 1.20 7.58 -2.39 -0.02 1.18 16 39 H 0.42 4.32 6.61 -92.71 -0.61 3.71 16 40 H 0.18 0.65 6.51 -2.91 -0.02 0.63 16 41 H 0.21 0.76 8.06 -2.91 -0.02 0.73 16 42 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 43 H 0.16 1.33 8.06 -2.91 -0.02 1.31 16 44 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 45 H 0.15 4.41 4.96 -2.92 -0.01 4.39 16 46 H 0.00 0.10 3.56 -2.39 -0.01 0.09 16 47 H 0.02 1.09 7.73 -2.38 -0.02 1.07 16 Total: -1.00 -85.47 375.10 1.39 -84.08 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: 0.34 Total: 6.29 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: 5.87 Total: -1.79 kcal Atomic # 7 Polarization: -114.97 SS G_CDS: -6.43 Total: -121.41 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: -0.05 Total: -19.23 kcal Atomic # 14 Polarization: 50.39 SS G_CDS: 1.67 Total: 52.07 kcal Total: -85.47 1.39 -84.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664726886.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.127 kcal (2) G-P(sol) polarization free energy of solvation -85.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds