Wall clock time and date at job start Tue Mar 31 2020 23:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 120.00066 * 2 1 4 4 H 1.48502 * 109.47315 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47032 * 299.99913 * 3 2 1 6 6 H 1.48502 * 109.47227 * 59.99690 * 3 2 1 7 7 C 1.38815 * 119.99807 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99744 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00113 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00015 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47208 * 185.01234 * 10 9 7 12 12 H 1.08998 * 109.99519 * 306.32811 * 11 10 9 13 13 C 1.54319 * 109.77474 * 67.48211 * 11 10 9 14 14 C 1.55154 * 102.86146 * 141.88481 * 13 11 10 15 15 C 1.54911 * 101.58562 * 324.30695 * 14 13 11 16 16 N 1.47021 * 109.88337 * 185.23299 * 11 10 9 17 17 C 1.34773 * 125.64766 * 61.67766 * 16 11 10 18 18 O 1.21277 * 120.00136 * 354.79536 * 17 16 11 19 19 C 1.50703 * 119.99948 * 174.79348 * 17 16 11 20 20 C 1.50704 * 109.46978 * 180.02562 * 19 17 16 21 21 C 1.36206 * 120.66743 * 264.97690 * 20 19 17 22 22 N 1.32581 * 121.87087 * 179.76725 * 21 20 19 23 23 C 1.31266 * 122.77991 * 0.53537 * 22 21 20 24 24 C 1.40398 * 119.88241 * 359.47470 * 23 22 21 25 25 C 1.40379 * 122.08884 * 180.22931 * 24 23 22 26 26 C 1.36165 * 119.51349 * 180.02562 * 25 24 23 27 27 C 1.39377 * 121.09508 * 0.04356 * 26 25 24 28 28 C 1.36217 * 121.02056 * 359.95741 * 27 26 25 29 29 C 1.40227 * 119.47973 * 0.02562 * 28 27 26 30 30 H 0.96997 * 119.99702 * 0.02562 * 1 2 3 31 31 H 0.97004 * 120.00067 * 359.97438 * 9 7 2 32 32 H 1.08996 * 109.47182 * 65.01580 * 10 9 7 33 33 H 1.08998 * 109.47245 * 305.01357 * 10 9 7 34 34 H 1.09007 * 110.92119 * 23.47072 * 13 11 10 35 35 H 1.08993 * 110.74660 * 260.21899 * 13 11 10 36 36 H 1.09000 * 111.00135 * 206.23342 * 14 13 11 37 37 H 1.08994 * 111.03436 * 82.39437 * 14 13 11 38 38 H 1.09003 * 110.36105 * 278.17398 * 15 14 13 39 39 H 1.08999 * 110.46228 * 155.89616 * 15 14 13 40 40 H 1.08994 * 109.47103 * 60.00051 * 19 17 16 41 41 H 1.09003 * 109.46874 * 299.99815 * 19 17 16 42 42 H 1.07998 * 119.06201 * 0.04350 * 21 20 19 43 43 H 1.08002 * 120.06182 * 179.75265 * 23 22 21 44 44 H 1.07995 * 120.24426 * 0.04630 * 25 24 23 45 45 H 1.08006 * 119.45469 * 180.02562 * 26 25 24 46 46 H 1.08001 * 119.49426 * 179.97438 * 27 26 25 47 47 H 1.08006 * 120.26025 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0686 -4.8169 -0.1255 12 1 0.3046 -4.7409 0.6482 13 6 0.4103 -4.7925 -1.5210 14 6 0.3093 -6.2981 -1.8817 15 6 1.6103 -6.8566 -1.2530 16 7 1.7806 -6.0972 -0.0010 17 6 2.4700 -6.5106 1.0808 18 8 2.6194 -5.7653 2.0259 19 6 3.0552 -7.8989 1.1162 20 6 3.7703 -8.1094 2.4259 21 6 5.1121 -7.8976 2.5267 22 7 5.7644 -8.0710 3.6678 23 6 5.1733 -8.4656 4.7714 24 6 3.7910 -8.7115 4.7752 25 6 3.1112 -9.1302 5.9298 26 6 1.7692 -9.3541 5.8740 27 6 1.0583 -9.1754 4.6886 28 6 1.6845 -8.7701 3.5488 29 6 3.0658 -8.5295 3.5685 30 1 -0.4849 0.8400 -0.0004 31 1 0.3556 -2.3881 0.0005 32 1 2.6156 -3.7544 0.9320 33 1 2.7504 -3.6766 -0.8411 34 1 1.0390 -4.2653 -2.2388 35 1 -0.5801 -4.3401 -1.4729 36 1 0.3047 -6.4416 -2.9622 37 1 -0.5708 -6.7515 -1.4257 38 1 2.4567 -6.6859 -1.9184 39 1 1.5046 -7.9204 -1.0402 40 1 3.7604 -8.0169 0.2936 41 1 2.2554 -8.6329 1.0173 42 1 5.6593 -7.5751 1.6532 43 1 5.7485 -8.5966 5.6761 44 1 3.6485 -9.2734 6.8556 45 1 1.2471 -9.6759 6.7630 46 1 -0.0056 -9.3609 4.6734 47 1 1.1216 -8.6359 2.6368 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666428925.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:44 Heat of formation + Delta-G solvation = 35.345587 kcal Electronic energy + Delta-G solvation = -28923.284907 eV Core-core repulsion = 25071.049836 eV Total energy + Delta-G solvation = -3852.235072 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.19189 -39.93457 -37.61923 -37.31912 -34.55438 -34.19862 -31.82966 -31.35139 -31.28965 -30.42310 -28.88293 -27.81285 -25.07410 -24.21689 -23.73580 -23.19436 -22.05133 -21.67991 -20.47462 -18.86950 -18.15232 -17.76803 -17.30948 -16.71284 -16.53611 -16.30638 -15.29949 -14.89078 -14.59991 -14.52230 -14.43575 -14.15574 -13.88655 -13.71530 -13.58674 -13.26679 -13.11097 -12.96529 -12.78478 -12.65491 -12.29496 -12.17429 -12.13986 -11.93353 -11.44079 -11.29125 -11.14305 -10.89961 -10.81945 -10.55976 -10.43251 -10.26496 -9.98967 -9.75373 -9.61774 -9.54495 -9.23116 -8.79684 -8.45142 -8.18688 -6.84991 -5.71365 -2.99088 0.17783 0.76101 1.72485 2.74072 2.87008 3.08283 3.47425 3.53394 3.55823 3.91378 4.14956 4.35980 4.49736 4.52289 4.54306 4.58810 4.66843 4.68284 4.77973 4.86619 4.96686 4.98665 5.06234 5.08995 5.26860 5.35565 5.38924 5.44841 5.56238 5.56964 5.62736 5.67644 5.79766 5.83169 5.87638 5.90689 6.05451 6.09265 6.18009 6.18927 6.26124 6.42366 6.45500 6.56759 6.64615 6.84106 7.06711 7.66010 7.77096 7.84683 8.31510 8.47909 9.58756 10.15628 10.51209 11.51865 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011739 B = 0.002862 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.591528 B = 9779.730600 C =10675.715731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.016 4.016 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.232 4.232 8 H 0.070 0.930 9 N -0.728 5.728 10 C 0.145 3.855 11 C 0.132 3.868 12 H 0.074 0.926 13 C -0.120 4.120 14 C -0.135 4.135 15 C 0.099 3.901 16 N -0.614 5.614 17 C 0.524 3.476 18 O -0.516 6.516 19 C -0.094 4.094 20 C -0.097 4.097 21 C 0.090 3.910 22 N -0.484 5.484 23 C 0.142 3.858 24 C -0.112 4.112 25 C -0.087 4.087 26 C -0.122 4.122 27 C -0.098 4.098 28 C -0.107 4.107 29 C -0.007 4.007 30 H 0.254 0.746 31 H 0.383 0.617 32 H 0.035 0.965 33 H 0.019 0.981 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.106 0.894 41 H 0.103 0.897 42 H 0.151 0.849 43 H 0.162 0.838 44 H 0.132 0.868 45 H 0.126 0.874 46 H 0.126 0.874 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.653 -26.852 3.512 27.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.363 4.363 8 H 0.087 0.913 9 N -0.373 5.373 10 C 0.017 3.983 11 C 0.029 3.971 12 H 0.092 0.908 13 C -0.158 4.158 14 C -0.173 4.173 15 C -0.025 4.025 16 N -0.349 5.349 17 C 0.312 3.688 18 O -0.390 6.390 19 C -0.135 4.135 20 C -0.099 4.099 21 C -0.054 4.054 22 N -0.191 5.191 23 C -0.030 4.030 24 C -0.114 4.114 25 C -0.107 4.107 26 C -0.140 4.140 27 C -0.117 4.117 28 C -0.125 4.125 29 C -0.012 4.012 30 H 0.063 0.937 31 H 0.216 0.784 32 H 0.052 0.948 33 H 0.037 0.963 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.124 0.876 41 H 0.121 0.879 42 H 0.169 0.831 43 H 0.179 0.821 44 H 0.150 0.850 45 H 0.144 0.856 46 H 0.144 0.856 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 3.843 -26.149 3.961 26.725 hybrid contribution -0.867 0.911 -0.086 1.261 sum 2.976 -25.238 3.875 25.707 Atomic orbital electron populations 1.69670 1.05054 1.25414 1.58293 1.24715 0.95546 0.97593 1.03261 0.86109 0.78836 0.84125 0.77131 1.20576 1.21916 1.21871 1.19264 0.91043 0.84033 1.41995 0.91251 1.42208 1.05711 0.99766 1.89627 1.20980 0.93366 0.85068 0.98877 1.21813 0.94498 0.83197 0.97613 0.90768 1.22660 1.02144 0.95171 0.95816 1.22798 0.96803 0.96737 1.00941 1.22344 0.98496 0.95722 0.85897 1.48546 1.52560 1.19398 1.14425 1.20008 0.78533 0.88569 0.81736 1.90800 1.57375 1.55635 1.35195 1.20576 1.01154 0.95726 0.96033 1.20002 0.94961 1.00488 0.94426 1.22017 0.91260 0.96348 0.95748 1.67416 1.40747 1.11766 0.99145 1.23169 0.90502 0.92877 0.96421 1.19009 0.95476 1.02661 0.94237 1.20966 0.94757 0.97937 0.97012 1.20913 0.94454 1.00440 0.98164 1.20979 1.00256 0.97827 0.92686 1.20937 0.93041 0.99333 0.99181 1.17944 0.93947 0.96734 0.92565 0.93658 0.78398 0.94762 0.96266 0.89895 0.89818 0.89986 0.90845 0.91217 0.90940 0.87604 0.87930 0.83147 0.82057 0.84967 0.85619 0.85605 0.85551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.91 13.06 55.49 0.72 -28.19 16 2 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 3 Si 0.91 23.25 29.55 -169.99 -5.02 18.23 16 4 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 6 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 7 C -0.23 -6.83 9.99 -15.06 -0.15 -6.98 16 8 H 0.07 2.02 7.83 -52.48 -0.41 1.61 16 9 N -0.73 -19.39 5.41 -59.91 -0.32 -19.71 16 10 C 0.15 3.24 5.66 -4.04 -0.02 3.21 16 11 C 0.13 2.28 2.95 -66.95 -0.20 2.08 16 12 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 13 C -0.12 -1.71 6.23 -24.90 -0.16 -1.87 16 14 C -0.13 -1.31 7.08 -24.58 -0.17 -1.49 16 15 C 0.10 0.95 6.74 -2.53 -0.02 0.93 16 16 N -0.61 -8.63 3.07 -163.02 -0.50 -9.13 16 17 C 0.52 7.90 7.66 -10.99 -0.08 7.82 16 18 O -0.52 -10.47 14.82 5.56 0.08 -10.39 16 19 C -0.09 -0.98 4.24 -29.03 -0.12 -1.10 16 20 C -0.10 -1.21 4.40 -104.44 -0.46 -1.67 16 21 C 0.09 1.16 10.72 -17.96 -0.19 0.97 16 22 N -0.48 -6.50 10.30 -13.16 -0.14 -6.63 16 23 C 0.14 1.61 11.05 -16.98 -0.19 1.42 16 24 C -0.11 -1.30 5.74 -106.86 -0.61 -1.91 16 25 C -0.09 -0.79 9.81 -39.52 -0.39 -1.18 16 26 C -0.12 -1.05 9.94 -39.90 -0.40 -1.45 16 27 C -0.10 -0.92 9.95 -39.88 -0.40 -1.32 16 28 C -0.11 -1.19 9.33 -39.56 -0.37 -1.56 16 29 C -0.01 -0.09 5.75 -106.81 -0.61 -0.70 16 30 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 31 H 0.38 10.47 7.61 -40.82 -0.31 10.16 16 32 H 0.03 0.87 6.55 -51.93 -0.34 0.53 16 33 H 0.02 0.43 8.01 -51.93 -0.42 0.02 16 34 H 0.08 1.29 7.77 -51.92 -0.40 0.89 16 35 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.49 7.47 -51.93 -0.39 0.10 16 40 H 0.11 0.83 8.06 -51.93 -0.42 0.41 16 41 H 0.10 0.81 6.64 -51.93 -0.34 0.46 16 42 H 0.15 1.66 8.05 -52.49 -0.42 1.24 16 43 H 0.16 1.26 8.06 -52.49 -0.42 0.84 16 44 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 45 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 46 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 47 H 0.13 1.25 6.64 -52.48 -0.35 0.90 16 LS Contribution 386.15 15.07 5.82 5.82 Total: -1.00 -37.36 386.15 -10.74 -48.10 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -6.74 Total: 7.26 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: -4.64 Total: -5.35 kcal Atomic # 7 Polarization: -63.42 SS G_CDS: -0.23 Total: -63.66 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.08 Total: -10.39 kcal Atomic # 14 Polarization: 23.25 SS G_CDS: -5.02 Total: 18.23 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -37.36 -10.74 -48.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666428925.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.447 kcal (2) G-P(sol) polarization free energy of solvation -37.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds