Wall clock time and date at job start Tue Mar 31 2020 23:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 120.00066 * 2 1 4 4 H 1.48502 * 109.47315 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47032 * 299.99913 * 3 2 1 6 6 H 1.48502 * 109.47227 * 59.99690 * 3 2 1 7 7 C 1.38815 * 119.99807 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99744 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00113 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00015 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47208 * 185.01234 * 10 9 7 12 12 H 1.08998 * 109.99519 * 306.32811 * 11 10 9 13 13 C 1.54319 * 109.77474 * 67.48211 * 11 10 9 14 14 C 1.55154 * 102.86146 * 141.88481 * 13 11 10 15 15 C 1.54911 * 101.58562 * 324.30695 * 14 13 11 16 16 N 1.47021 * 109.88337 * 185.23299 * 11 10 9 17 17 C 1.34773 * 125.64766 * 61.67766 * 16 11 10 18 18 O 1.21277 * 120.00136 * 354.79536 * 17 16 11 19 19 C 1.50703 * 119.99948 * 174.79348 * 17 16 11 20 20 C 1.50704 * 109.46978 * 180.02562 * 19 17 16 21 21 C 1.36206 * 120.66743 * 264.97690 * 20 19 17 22 22 N 1.32581 * 121.87087 * 179.76725 * 21 20 19 23 23 C 1.31266 * 122.77991 * 0.53537 * 22 21 20 24 24 C 1.40398 * 119.88241 * 359.47470 * 23 22 21 25 25 C 1.40379 * 122.08884 * 180.22931 * 24 23 22 26 26 C 1.36165 * 119.51349 * 180.02562 * 25 24 23 27 27 C 1.39377 * 121.09508 * 0.04356 * 26 25 24 28 28 C 1.36217 * 121.02056 * 359.95741 * 27 26 25 29 29 C 1.40227 * 119.47973 * 0.02562 * 28 27 26 30 30 H 0.96997 * 119.99702 * 0.02562 * 1 2 3 31 31 H 0.97004 * 120.00067 * 359.97438 * 9 7 2 32 32 H 1.08996 * 109.47182 * 65.01580 * 10 9 7 33 33 H 1.08998 * 109.47245 * 305.01357 * 10 9 7 34 34 H 1.09007 * 110.92119 * 23.47072 * 13 11 10 35 35 H 1.08993 * 110.74660 * 260.21899 * 13 11 10 36 36 H 1.09000 * 111.00135 * 206.23342 * 14 13 11 37 37 H 1.08994 * 111.03436 * 82.39437 * 14 13 11 38 38 H 1.09003 * 110.36105 * 278.17398 * 15 14 13 39 39 H 1.08999 * 110.46228 * 155.89616 * 15 14 13 40 40 H 1.08994 * 109.47103 * 60.00051 * 19 17 16 41 41 H 1.09003 * 109.46874 * 299.99815 * 19 17 16 42 42 H 1.07998 * 119.06201 * 0.04350 * 21 20 19 43 43 H 1.08002 * 120.06182 * 179.75265 * 23 22 21 44 44 H 1.07995 * 120.24426 * 0.04630 * 25 24 23 45 45 H 1.08006 * 119.45469 * 180.02562 * 26 25 24 46 46 H 1.08001 * 119.49426 * 179.97438 * 27 26 25 47 47 H 1.08006 * 120.26025 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0686 -4.8169 -0.1255 12 1 0.3046 -4.7409 0.6482 13 6 0.4103 -4.7925 -1.5210 14 6 0.3093 -6.2981 -1.8817 15 6 1.6103 -6.8566 -1.2530 16 7 1.7806 -6.0972 -0.0010 17 6 2.4700 -6.5106 1.0808 18 8 2.6194 -5.7653 2.0259 19 6 3.0552 -7.8989 1.1162 20 6 3.7703 -8.1094 2.4259 21 6 5.1121 -7.8976 2.5267 22 7 5.7644 -8.0710 3.6678 23 6 5.1733 -8.4656 4.7714 24 6 3.7910 -8.7115 4.7752 25 6 3.1112 -9.1302 5.9298 26 6 1.7692 -9.3541 5.8740 27 6 1.0583 -9.1754 4.6886 28 6 1.6845 -8.7701 3.5488 29 6 3.0658 -8.5295 3.5685 30 1 -0.4849 0.8400 -0.0004 31 1 0.3556 -2.3881 0.0005 32 1 2.6156 -3.7544 0.9320 33 1 2.7504 -3.6766 -0.8411 34 1 1.0390 -4.2653 -2.2388 35 1 -0.5801 -4.3401 -1.4729 36 1 0.3047 -6.4416 -2.9622 37 1 -0.5708 -6.7515 -1.4257 38 1 2.4567 -6.6859 -1.9184 39 1 1.5046 -7.9204 -1.0402 40 1 3.7604 -8.0169 0.2936 41 1 2.2554 -8.6329 1.0173 42 1 5.6593 -7.5751 1.6532 43 1 5.7485 -8.5966 5.6761 44 1 3.6485 -9.2734 6.8556 45 1 1.2471 -9.6759 6.7630 46 1 -0.0056 -9.3609 4.6734 47 1 1.1216 -8.6359 2.6368 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666428925.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:43 Heat of formation + Delta-G solvation = 10.909094 kcal Electronic energy + Delta-G solvation = -28924.344553 eV Core-core repulsion = 25071.049836 eV Total energy + Delta-G solvation = -3853.294718 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.04628 -41.06034 -38.71520 -38.22478 -36.45562 -35.17458 -33.53585 -32.65421 -32.14118 -31.23877 -30.39361 -28.77526 -26.75841 -25.19248 -24.68226 -24.47335 -23.55974 -22.53208 -21.62720 -20.16923 -19.12378 -18.91696 -18.58042 -18.08667 -17.51587 -17.32229 -16.53289 -16.29212 -15.79046 -15.63090 -15.39392 -15.34193 -15.07265 -15.00630 -14.89200 -14.62301 -14.40366 -14.01290 -13.80052 -13.63778 -13.55838 -13.13131 -13.08456 -12.93755 -12.91100 -12.76174 -12.66832 -12.19644 -12.07672 -11.95608 -11.93517 -11.80820 -11.59085 -11.22264 -11.00466 -10.73817 -10.47282 -10.02525 -9.67348 -9.07374 -8.98846 -8.01449 -5.31197 -0.61346 -0.05297 0.92434 1.41897 1.43963 1.54095 1.60690 1.91802 2.15654 2.51972 3.08082 3.30993 3.35328 3.53309 3.57013 3.66271 3.75684 3.78596 3.89467 3.94244 3.95743 4.06238 4.12993 4.22330 4.29917 4.31713 4.34557 4.37642 4.51972 4.55183 4.64338 4.75240 4.79346 4.85204 4.92346 4.96069 5.04856 5.09632 5.12983 5.13671 5.16062 5.35310 5.40117 5.46211 5.46838 5.49653 5.66372 5.93280 6.20399 6.56868 6.97811 7.17513 7.26780 7.98060 8.25764 9.22003 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011739 B = 0.002862 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.591528 B = 9779.730600 C =10675.715731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.070 4.070 3 Si 0.976 3.024 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.291 1.291 7 C -0.251 4.251 8 H 0.065 0.935 9 N -0.736 5.736 10 C 0.153 3.847 11 C 0.139 3.861 12 H 0.049 0.951 13 C -0.118 4.118 14 C -0.119 4.119 15 C 0.092 3.908 16 N -0.611 5.611 17 C 0.519 3.481 18 O -0.580 6.580 19 C -0.080 4.080 20 C -0.110 4.110 21 C 0.067 3.933 22 N -0.515 5.515 23 C 0.138 3.862 24 C -0.134 4.134 25 C -0.089 4.089 26 C -0.125 4.125 27 C -0.098 4.098 28 C -0.130 4.130 29 C -0.031 4.031 30 H 0.254 0.746 31 H 0.376 0.624 32 H -0.001 1.001 33 H 0.019 0.981 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.111 0.889 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.116 0.884 40 H 0.136 0.864 41 H 0.135 0.865 42 H 0.158 0.842 43 H 0.192 0.808 44 H 0.163 0.837 45 H 0.157 0.843 46 H 0.150 0.850 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.299 -29.128 3.069 29.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.262 4.262 3 Si 0.804 3.196 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.218 1.218 7 C -0.382 4.382 8 H 0.083 0.917 9 N -0.380 5.380 10 C 0.025 3.975 11 C 0.035 3.965 12 H 0.067 0.933 13 C -0.156 4.156 14 C -0.157 4.157 15 C -0.028 4.028 16 N -0.346 5.346 17 C 0.309 3.691 18 O -0.459 6.459 19 C -0.120 4.120 20 C -0.112 4.112 21 C -0.076 4.076 22 N -0.222 5.222 23 C -0.033 4.033 24 C -0.136 4.136 25 C -0.108 4.108 26 C -0.143 4.143 27 C -0.117 4.117 28 C -0.148 4.148 29 C -0.036 4.036 30 H 0.063 0.937 31 H 0.208 0.792 32 H 0.017 0.983 33 H 0.037 0.963 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.129 0.871 37 H 0.105 0.895 38 H 0.101 0.899 39 H 0.134 0.866 40 H 0.154 0.846 41 H 0.153 0.847 42 H 0.175 0.825 43 H 0.209 0.791 44 H 0.180 0.820 45 H 0.174 0.826 46 H 0.167 0.833 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 3.499 -28.480 3.469 28.903 hybrid contribution -0.785 1.595 0.156 1.785 sum 2.713 -26.884 3.625 27.263 Atomic orbital electron populations 1.69813 1.06437 1.26231 1.59045 1.25565 0.96534 1.00970 1.03162 0.85050 0.77941 0.79523 0.77083 1.19622 1.21018 1.21800 1.19570 0.91150 0.85466 1.42043 0.91674 1.42326 1.05489 1.00698 1.89449 1.20956 0.94162 0.85586 0.96790 1.21500 0.92885 0.83247 0.98906 0.93315 1.22562 1.00766 0.98980 0.93314 1.22814 0.97488 0.92409 1.02940 1.22736 0.98883 0.97437 0.83792 1.48656 1.51624 1.18339 1.15936 1.20892 0.77589 0.89801 0.80779 1.90771 1.59761 1.57739 1.37620 1.20602 1.02355 0.92849 0.96197 1.20212 0.94921 1.00586 0.95471 1.22254 0.91979 0.97154 0.96185 1.67410 1.41619 1.13226 0.99949 1.23707 0.91009 0.91781 0.96846 1.19350 0.95831 1.03297 0.95084 1.21358 0.95275 0.96902 0.97271 1.21338 0.94461 0.99487 0.98979 1.21386 1.01563 0.96301 0.92448 1.21122 0.92677 1.00603 1.00375 1.18300 0.94922 0.97272 0.93152 0.93712 0.79193 0.98261 0.96292 0.91320 0.90744 0.87060 0.89508 0.89927 0.86631 0.84594 0.84738 0.82467 0.79142 0.81968 0.82554 0.83276 0.84909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.83 13.06 21.65 0.28 -60.54 16 2 C -0.07 -4.21 5.50 84.86 0.47 -3.74 16 3 Si 0.98 48.42 29.55 68.60 2.03 50.44 16 4 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 5 H -0.28 -13.64 7.11 99.48 0.71 -12.94 16 6 H -0.29 -14.36 7.11 99.48 0.71 -13.66 16 7 C -0.25 -15.21 9.99 84.03 0.84 -14.37 16 8 H 0.07 3.92 7.83 -2.91 -0.02 3.89 16 9 N -0.74 -41.03 5.41 -343.46 -1.86 -42.89 16 10 C 0.15 7.18 5.66 86.38 0.49 7.66 16 11 C 0.14 4.96 2.95 45.34 0.13 5.10 16 12 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 13 C -0.12 -3.34 6.23 31.78 0.20 -3.14 16 14 C -0.12 -1.94 7.08 31.99 0.23 -1.71 16 15 C 0.09 1.45 6.74 86.86 0.59 2.04 16 16 N -0.61 -16.76 3.07 -788.06 -2.42 -19.18 16 17 C 0.52 15.70 7.66 87.66 0.67 16.37 16 18 O -0.58 -24.87 14.82 -3.02 -0.04 -24.91 16 19 C -0.08 -1.55 4.24 29.10 0.12 -1.43 16 20 C -0.11 -2.75 4.40 -19.75 -0.09 -2.84 16 21 C 0.07 1.79 10.72 84.11 0.90 2.69 16 22 N -0.51 -14.21 10.30 -195.54 -2.01 -16.22 16 23 C 0.14 3.13 11.05 85.30 0.94 4.07 16 24 C -0.13 -3.06 5.74 -21.31 -0.12 -3.18 16 25 C -0.09 -1.46 9.81 22.31 0.22 -1.24 16 26 C -0.12 -1.86 9.94 22.06 0.22 -1.64 16 27 C -0.10 -1.67 9.95 22.07 0.22 -1.45 16 28 C -0.13 -2.77 9.33 22.28 0.21 -2.57 16 29 C -0.03 -0.79 5.75 -21.28 -0.12 -0.91 16 30 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 31 H 0.38 21.60 7.61 -92.71 -0.71 20.89 16 32 H 0.00 -0.03 6.55 -2.39 -0.02 -0.04 16 33 H 0.02 0.89 8.01 -2.39 -0.02 0.87 16 34 H 0.07 2.14 7.77 -2.38 -0.02 2.12 16 35 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.12 0.92 7.47 -2.39 -0.02 0.90 16 40 H 0.14 1.77 8.06 -2.39 -0.02 1.75 16 41 H 0.13 1.70 6.64 -2.39 -0.02 1.69 16 42 H 0.16 3.63 8.05 -2.91 -0.02 3.61 16 43 H 0.19 2.81 8.06 -2.91 -0.02 2.79 16 44 H 0.16 1.54 8.06 -2.91 -0.02 1.51 16 45 H 0.16 1.31 8.06 -2.91 -0.02 1.29 16 46 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 47 H 0.13 2.48 6.64 -2.91 -0.02 2.46 16 Total: -1.00 -87.04 386.15 2.37 -84.67 By element: Atomic # 1 Polarization: 28.63 SS G_CDS: 0.28 Total: 28.91 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: 6.11 Total: -0.29 kcal Atomic # 7 Polarization: -132.82 SS G_CDS: -6.01 Total: -138.83 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: -0.04 Total: -24.91 kcal Atomic # 14 Polarization: 48.42 SS G_CDS: 2.03 Total: 50.44 kcal Total: -87.04 2.37 -84.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666428925.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.581 kcal (2) G-P(sol) polarization free energy of solvation -87.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds