Wall clock time and date at job start Tue Mar 31 2020 22:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86799 * 120.00336 * 2 1 4 4 H 1.48500 * 109.47105 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47373 * 300.00006 * 3 2 1 6 6 H 1.48499 * 109.46897 * 60.00140 * 3 2 1 7 7 C 1.38821 * 119.99698 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00014 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00097 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00218 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46993 * 179.97438 * 10 9 7 12 12 H 1.08999 * 110.43299 * 52.46456 * 11 10 9 13 13 C 1.54268 * 110.48862 * 289.77301 * 11 10 9 14 14 C 1.53876 * 106.59992 * 217.71453 * 13 11 10 15 15 C 1.54268 * 106.59607 * 0.02562 * 14 13 11 16 16 C 1.54882 * 104.19992 * 23.60931 * 15 14 13 17 17 H 1.09004 * 110.75771 * 80.36858 * 16 15 14 18 18 N 1.46498 * 110.76078 * 203.74310 * 16 15 14 19 19 C 1.34779 * 119.99745 * 268.33148 * 18 16 15 20 20 O 1.21563 * 120.00091 * 359.97438 * 19 18 16 21 21 C 1.47758 * 119.99874 * 179.97438 * 19 18 16 22 22 C 1.40601 * 120.26356 * 359.71856 * 21 19 18 23 23 N 1.30810 * 121.53125 * 179.76440 * 22 21 19 24 24 C 1.33821 * 121.71960 * 0.49746 * 23 22 21 25 25 C 1.40524 * 120.80980 * 179.73117 * 24 23 22 26 26 C 1.36128 * 119.81139 * 180.02562 * 25 24 23 27 27 C 1.39338 * 121.09004 * 359.97438 * 26 25 24 28 28 C 1.36143 * 120.83465 * 0.02562 * 27 26 25 29 29 C 1.40541 * 119.62049 * 359.97438 * 28 27 26 30 30 C 1.39007 * 120.27019 * 179.97438 * 21 19 18 31 31 H 0.97002 * 119.99969 * 359.97438 * 1 2 3 32 32 H 0.97001 * 119.99936 * 0.02562 * 9 7 2 33 33 H 1.09004 * 109.46408 * 60.00019 * 10 9 7 34 34 H 1.09001 * 109.46782 * 300.00149 * 10 9 7 35 35 H 1.08998 * 110.02839 * 337.00463 * 13 11 10 36 36 H 1.09000 * 110.02607 * 98.37950 * 13 11 10 37 37 H 1.08994 * 110.02975 * 119.28475 * 14 13 11 38 38 H 1.09000 * 110.03018 * 240.67159 * 14 13 11 39 39 H 1.09003 * 110.48471 * 264.93239 * 15 14 13 40 40 H 1.09004 * 110.48268 * 142.29006 * 15 14 13 41 41 H 0.97000 * 119.99941 * 88.32688 * 18 16 15 42 42 H 1.07994 * 119.23453 * 0.02562 * 22 21 19 43 43 H 1.07993 * 120.09257 * 0.02562 * 25 24 23 44 44 H 1.08004 * 119.45293 * 179.97438 * 26 25 24 45 45 H 1.07996 * 119.58191 * 179.97438 * 27 26 25 46 46 H 1.07996 * 120.18759 * 179.97438 * 28 27 26 47 47 H 1.08000 * 121.01425 * 359.97438 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3963 1.2125 7 6 2.0102 -1.2023 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6569 -0.0005 11 6 1.0635 -4.8197 0.0001 12 1 0.3430 -4.7047 -0.8096 13 6 0.3416 -4.9121 1.3603 14 6 0.1758 -6.4104 1.6691 15 6 0.8034 -7.1762 0.4861 16 6 1.8105 -6.1711 -0.1257 17 1 2.7373 -6.1554 0.4478 18 7 2.0733 -6.4898 -1.5312 19 6 3.0997 -7.3000 -1.8579 20 8 3.8075 -7.7659 -0.9863 21 6 3.3645 -7.6220 -3.2755 22 6 2.5457 -7.0909 -4.2876 23 7 2.7602 -7.3559 -5.5505 24 6 3.7620 -8.1521 -5.9420 25 6 3.9717 -8.4284 -7.3038 26 6 4.9967 -9.2417 -7.6793 27 6 5.8484 -9.8092 -6.7338 28 6 5.6776 -9.5654 -5.4053 29 6 4.6296 -8.7305 -4.9814 30 6 4.4218 -8.4565 -3.6188 31 1 -0.4850 0.8401 0.0004 32 1 0.3554 -2.3881 -0.0005 33 1 2.6845 -3.7146 0.8895 34 1 2.6845 -3.7146 -0.8905 35 1 0.9422 -4.4353 2.1349 36 1 -0.6353 -4.4326 1.2977 37 1 0.6960 -6.6608 2.5936 38 1 -0.8819 -6.6587 1.7570 39 1 0.0393 -7.4428 -0.2441 40 1 1.3214 -8.0674 0.8405 41 1 1.5087 -6.1178 -2.2267 42 1 1.7230 -6.4460 -4.0164 43 1 3.3215 -7.9968 -8.0502 44 1 5.1523 -9.4505 -8.7275 45 1 6.6536 -10.4512 -7.0588 46 1 6.3437 -10.0111 -4.6814 47 1 5.0642 -8.8811 -2.8615 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667752271.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:53 Heat of formation + Delta-G solvation = 18.210591 kcal Electronic energy + Delta-G solvation = -28072.418643 eV Core-core repulsion = 24219.440542 eV Total energy + Delta-G solvation = -3852.978101 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.27921 -39.88847 -38.10658 -37.17257 -34.50637 -33.77544 -33.75833 -31.40484 -31.09250 -30.41789 -28.58637 -27.67876 -25.01816 -24.42164 -24.23811 -22.45532 -22.16809 -21.34254 -20.49996 -19.66437 -18.47264 -18.07607 -17.54976 -16.99467 -16.35003 -16.05843 -15.24357 -14.98153 -14.85509 -14.64470 -14.52415 -14.38718 -14.30922 -13.81067 -13.59303 -13.48645 -13.23470 -13.12156 -12.91201 -12.20000 -12.19391 -12.14995 -11.98488 -11.86316 -11.27395 -10.96955 -10.93846 -10.85525 -10.76043 -10.52784 -10.42369 -10.35228 -10.14511 -9.94841 -9.71906 -9.68678 -9.23010 -8.98559 -8.87006 -8.65717 -6.91091 -5.76281 -3.04404 -0.11164 0.26720 1.51974 2.25842 2.99593 3.04815 3.43820 3.49904 3.51871 3.77365 3.84485 4.19484 4.34541 4.42642 4.44299 4.54916 4.62815 4.71625 4.75849 4.81620 4.87904 5.02176 5.04802 5.38093 5.42365 5.50514 5.50907 5.54996 5.61882 5.64119 5.65858 5.71217 5.80881 5.90482 5.91606 6.00531 6.06592 6.09471 6.17848 6.23258 6.30583 6.39557 6.45136 6.54709 6.59857 6.78252 6.89823 7.40460 7.50980 7.71762 8.08064 8.42856 9.54347 10.11972 10.47029 11.46679 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011122 B = 0.002501 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2516.826410 B =11193.627119 C =12902.951920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.731 5.731 10 C 0.161 3.839 11 C -0.103 4.103 12 H 0.079 0.921 13 C -0.112 4.112 14 C -0.122 4.122 15 C -0.132 4.132 16 C 0.145 3.855 17 H 0.101 0.899 18 N -0.709 5.709 19 C 0.565 3.435 20 O -0.537 6.537 21 C -0.191 4.191 22 C 0.164 3.836 23 N -0.474 5.474 24 C 0.141 3.859 25 C -0.098 4.098 26 C -0.093 4.093 27 C -0.121 4.121 28 C -0.085 4.085 29 C -0.114 4.114 30 C 0.012 3.988 31 H 0.254 0.746 32 H 0.384 0.616 33 H 0.021 0.979 34 H 0.018 0.982 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.401 0.599 42 H 0.164 0.836 43 H 0.138 0.862 44 H 0.132 0.868 45 H 0.130 0.870 46 H 0.134 0.866 47 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.340 -23.553 -11.068 26.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.368 4.368 8 H 0.088 0.912 9 N -0.375 5.375 10 C 0.033 3.967 11 C -0.122 4.122 12 H 0.098 0.902 13 C -0.150 4.150 14 C -0.160 4.160 15 C -0.171 4.171 16 C 0.040 3.960 17 H 0.119 0.881 18 N -0.359 5.359 19 C 0.352 3.648 20 O -0.415 6.415 21 C -0.196 4.196 22 C -0.010 4.010 23 N -0.181 5.181 24 C 0.020 3.980 25 C -0.116 4.116 26 C -0.112 4.112 27 C -0.139 4.139 28 C -0.104 4.104 29 C -0.116 4.116 30 C -0.015 4.015 31 H 0.064 0.936 32 H 0.217 0.783 33 H 0.038 0.962 34 H 0.035 0.965 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.237 0.763 42 H 0.181 0.819 43 H 0.156 0.844 44 H 0.150 0.850 45 H 0.148 0.852 46 H 0.152 0.848 47 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 6.488 -23.431 -11.162 26.752 hybrid contribution 0.347 0.914 0.277 1.016 sum 6.835 -22.516 -10.885 25.927 Atomic orbital electron populations 1.69663 1.05073 1.25488 1.58019 1.24726 0.95524 0.97647 1.03133 0.86132 0.78828 0.84180 0.77175 1.20583 1.21890 1.21873 1.19273 0.91045 0.84190 1.42327 0.91242 1.42335 1.05820 0.99879 1.89456 1.20695 0.92916 0.85198 0.97898 1.22436 0.97818 0.93366 0.98584 0.90219 1.22074 1.01210 0.95065 0.96653 1.22099 1.00477 0.95634 0.97807 1.22709 0.98206 0.98235 0.97946 1.22118 0.99187 0.94138 0.80509 0.88136 1.45905 1.31620 1.48910 1.09510 1.17933 0.80559 0.78872 0.87480 1.90776 1.48128 1.52706 1.49892 1.21002 1.00106 1.03520 0.94959 1.23107 0.96364 0.94211 0.87298 1.67979 1.18151 1.13651 1.18353 1.19047 0.91227 0.93533 0.94155 1.20861 0.98510 0.98509 0.93734 1.21003 0.94169 0.95831 1.00241 1.20960 0.99790 1.00214 0.92966 1.21084 0.96153 0.96480 0.96708 1.18845 0.98326 1.00761 0.93642 1.21970 0.93565 0.90945 0.94985 0.93605 0.78263 0.96167 0.96461 0.90945 0.91204 0.91863 0.91860 0.91454 0.91504 0.76339 0.81937 0.84387 0.85047 0.85232 0.84822 0.82873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.11 13.06 55.49 0.72 -27.38 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.56 29.55 -169.99 -5.02 17.54 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 7 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.73 -18.20 5.49 -59.91 -0.33 -18.53 16 10 C 0.16 3.19 5.59 -4.04 -0.02 3.16 16 11 C -0.10 -1.56 2.51 -88.94 -0.22 -1.79 16 12 H 0.08 1.20 8.02 -51.93 -0.42 0.78 16 13 C -0.11 -1.63 6.23 -25.61 -0.16 -1.79 16 14 C -0.12 -1.44 6.80 -25.61 -0.17 -1.61 16 15 C -0.13 -1.55 6.51 -25.07 -0.16 -1.71 16 16 C 0.15 1.94 2.69 -65.93 -0.18 1.77 16 17 H 0.10 1.53 7.47 -51.93 -0.39 1.14 16 18 N -0.71 -8.59 5.13 -52.83 -0.27 -8.86 16 19 C 0.57 7.50 7.77 -12.37 -0.10 7.40 16 20 O -0.54 -8.70 16.03 5.31 0.09 -8.61 16 21 C -0.19 -2.21 5.89 -104.83 -0.62 -2.83 16 22 C 0.16 1.80 10.68 -17.10 -0.18 1.62 16 23 N -0.47 -5.72 10.30 -10.67 -0.11 -5.83 16 24 C 0.14 1.57 6.61 -84.79 -0.56 1.01 16 25 C -0.10 -0.86 9.97 -39.48 -0.39 -1.25 16 26 C -0.09 -0.61 9.94 -39.93 -0.40 -1.01 16 27 C -0.12 -0.77 9.96 -39.93 -0.40 -1.17 16 28 C -0.09 -0.65 9.77 -39.47 -0.39 -1.04 16 29 C -0.11 -1.16 5.74 -106.81 -0.61 -1.77 16 30 C 0.01 0.13 9.46 -38.43 -0.36 -0.24 16 31 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 32 H 0.38 9.96 7.63 -40.82 -0.31 9.64 16 33 H 0.02 0.42 7.95 -51.93 -0.41 0.01 16 34 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 1.16 7.71 -51.93 -0.40 0.76 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.40 4.05 6.59 -40.82 -0.27 3.78 16 42 H 0.16 1.40 6.37 -52.49 -0.33 1.06 16 43 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 44 H 0.13 0.52 8.06 -52.48 -0.42 0.09 16 45 H 0.13 0.49 8.06 -52.49 -0.42 0.06 16 46 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 47 H 0.15 1.47 7.70 -52.49 -0.40 1.07 16 LS Contribution 389.17 15.07 5.86 5.86 Total: -1.00 -33.92 389.17 -10.94 -44.86 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: -6.71 Total: 9.51 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: -5.17 Total: -8.57 kcal Atomic # 7 Polarization: -60.61 SS G_CDS: 0.01 Total: -60.60 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: 0.09 Total: -8.61 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.92 -10.94 -44.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667752271.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.072 kcal (2) G-P(sol) polarization free energy of solvation -33.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds