Wall clock time and date at job start Tue Mar 31 2020 22:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86805 * 119.99813 * 2 1 4 4 H 1.48499 * 109.47101 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47197 * 300.00026 * 3 2 1 6 6 H 1.48496 * 109.47048 * 60.00393 * 3 2 1 7 7 C 1.38817 * 120.00232 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99886 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99814 * 359.97438 * 7 2 1 10 10 C 1.46497 * 119.99680 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46978 * 180.02562 * 10 9 7 12 12 H 1.08999 * 110.05489 * 53.58286 * 11 10 9 13 13 C 1.54268 * 110.02818 * 292.16760 * 11 10 9 14 14 C 1.54894 * 104.19658 * 217.10395 * 13 11 10 15 15 C 1.54889 * 102.74492 * 37.94483 * 14 13 11 16 16 C 1.53870 * 110.03308 * 175.00369 * 11 10 9 17 17 H 1.09000 * 110.07104 * 238.59232 * 16 11 10 18 18 N 1.46499 * 110.03360 * 359.97438 * 16 11 10 19 19 C 1.34777 * 120.00195 * 203.62013 * 18 16 11 20 20 O 1.21563 * 119.99934 * 0.02562 * 19 18 16 21 21 C 1.47761 * 119.99669 * 180.27934 * 19 18 16 22 22 C 1.40590 * 120.26989 * 359.44534 * 21 19 18 23 23 N 1.30800 * 121.53575 * 179.76553 * 22 21 19 24 24 C 1.33824 * 121.71943 * 0.49785 * 23 22 21 25 25 C 1.40522 * 120.81159 * 179.73167 * 24 23 22 26 26 C 1.36131 * 119.81560 * 180.02562 * 25 24 23 27 27 C 1.39344 * 121.08293 * 0.04862 * 26 25 24 28 28 C 1.36136 * 120.84108 * 359.94371 * 27 26 25 29 29 C 1.40552 * 119.61768 * 0.03417 * 28 27 26 30 30 C 1.39020 * 120.26467 * 179.72990 * 21 19 18 31 31 H 0.96997 * 120.00364 * 0.02562 * 1 2 3 32 32 H 0.97000 * 119.99807 * 0.02562 * 9 7 2 33 33 H 1.09003 * 109.47094 * 60.00680 * 10 9 7 34 34 H 1.09004 * 109.47335 * 300.00420 * 10 9 7 35 35 H 1.09000 * 110.48861 * 98.42853 * 13 11 10 36 36 H 1.08996 * 110.60218 * 335.83491 * 13 11 10 37 37 H 1.09001 * 110.75472 * 279.63621 * 14 13 11 38 38 H 1.08997 * 110.76051 * 156.25603 * 14 13 11 39 39 H 1.09000 * 110.48934 * 203.38390 * 15 14 13 40 40 H 1.09002 * 110.49051 * 80.73773 * 15 14 13 41 41 H 0.97000 * 120.00069 * 23.62741 * 18 16 11 42 42 H 1.08001 * 119.23248 * 0.02562 * 22 21 19 43 43 H 1.08000 * 120.09563 * 0.02628 * 25 24 23 44 44 H 1.08001 * 119.45880 * 180.02562 * 26 25 24 45 45 H 1.08002 * 119.57714 * 179.97438 * 27 26 25 46 46 H 1.07994 * 120.19440 * 180.02562 * 28 27 26 47 47 H 1.08006 * 121.01342 * 359.94766 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0581 -3.6567 -0.0017 11 6 1.0639 -4.8197 -0.0021 12 1 0.3587 -4.7083 -0.8257 13 6 0.3054 -4.8669 1.3404 14 6 0.1428 -6.3794 1.6320 15 6 1.4882 -6.9687 1.1405 16 6 1.8160 -6.1561 -0.1292 17 1 1.4765 -6.6936 -1.0146 18 7 3.2585 -5.9142 -0.2123 19 6 4.0631 -6.8292 -0.7883 20 8 3.5918 -7.8551 -1.2392 21 6 5.5188 -6.5880 -0.8665 22 6 6.0690 -5.4007 -0.3525 23 7 7.3543 -5.1637 -0.4045 24 6 8.2082 -6.0331 -0.9575 25 6 9.5850 -5.7565 -1.0082 26 6 10.4355 -6.6552 -1.5759 27 6 9.9645 -7.8518 -2.1124 28 6 8.6378 -8.1558 -2.0823 29 6 7.7309 -7.2514 -1.5034 30 6 6.3546 -7.5305 -1.4544 31 1 -0.4850 0.8400 -0.0004 32 1 0.3555 -2.3881 -0.0005 33 1 2.6854 -3.7149 0.8879 34 1 2.6842 -3.7140 -0.8921 35 1 -0.6700 -4.3899 1.2445 36 1 0.8879 -4.3873 2.1271 37 1 -0.6907 -6.7946 1.0653 38 1 0.0111 -6.5551 2.6996 39 1 1.3762 -8.0256 0.8986 40 1 2.2638 -6.8290 1.8937 41 1 3.6345 -5.0956 0.1473 42 1 5.4157 -4.6692 0.0997 43 1 9.9674 -4.8336 -0.5979 44 1 11.4926 -6.4369 -1.6114 45 1 10.6608 -8.5471 -2.5575 46 1 8.2842 -9.0864 -2.5008 47 1 5.9582 -8.4495 -1.8606 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667752272.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:57 Heat of formation + Delta-G solvation = 27.857515 kcal Electronic energy + Delta-G solvation = -28510.600361 eV Core-core repulsion = 24658.040582 eV Total energy + Delta-G solvation = -3852.559779 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.23658 -39.99779 -38.13406 -37.11907 -34.40476 -33.76846 -33.70287 -31.43842 -31.03196 -30.35934 -28.60119 -27.62020 -24.88885 -24.43008 -24.33104 -22.53322 -22.39195 -21.34087 -20.49951 -19.11643 -18.62268 -18.09684 -17.48294 -16.94269 -16.28667 -15.71242 -15.28639 -15.15232 -14.87467 -14.63369 -14.55615 -14.37248 -14.23818 -13.80001 -13.69364 -13.55419 -13.30722 -13.02816 -12.92902 -12.22969 -12.12448 -12.07738 -11.81814 -11.67773 -11.34029 -10.89100 -10.87298 -10.82912 -10.78966 -10.50928 -10.42767 -10.33695 -10.25271 -9.96093 -9.72597 -9.61949 -9.18870 -8.99672 -8.87642 -8.60159 -6.96543 -5.79643 -3.08740 -0.05569 0.33022 1.57451 2.31946 3.08414 3.09454 3.42161 3.48392 3.50169 3.83531 3.92509 4.24926 4.40415 4.47396 4.50916 4.55170 4.67059 4.74119 4.79159 4.80288 4.92688 5.08257 5.10976 5.42745 5.44268 5.51142 5.52469 5.56746 5.64012 5.65265 5.71763 5.73670 5.83555 5.90217 5.96491 6.03573 6.05415 6.12859 6.16668 6.19378 6.26785 6.41682 6.45336 6.54981 6.56436 6.67267 6.77974 7.47112 7.59204 7.67184 8.13494 8.38738 9.50665 10.07134 10.41749 11.43089 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009502 B = 0.003071 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2946.117812 B = 9114.997602 C =11702.683187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.906 3.094 4 H -0.279 1.279 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.242 4.242 8 H 0.071 0.929 9 N -0.727 5.727 10 C 0.155 3.845 11 C -0.108 4.108 12 H 0.084 0.916 13 C -0.112 4.112 14 C -0.124 4.124 15 C -0.132 4.132 16 C 0.149 3.851 17 H 0.091 0.909 18 N -0.713 5.713 19 C 0.563 3.437 20 O -0.541 6.541 21 C -0.191 4.191 22 C 0.165 3.835 23 N -0.472 5.472 24 C 0.142 3.858 25 C -0.097 4.097 26 C -0.093 4.093 27 C -0.122 4.122 28 C -0.086 4.086 29 C -0.114 4.114 30 C 0.011 3.989 31 H 0.255 0.745 32 H 0.385 0.615 33 H 0.017 0.983 34 H 0.021 0.979 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.407 0.593 42 H 0.164 0.836 43 H 0.139 0.861 44 H 0.131 0.869 45 H 0.129 0.871 46 H 0.133 0.867 47 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.200 -18.956 -0.933 24.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.373 4.373 8 H 0.089 0.911 9 N -0.372 5.372 10 C 0.027 3.973 11 C -0.127 4.127 12 H 0.102 0.898 13 C -0.149 4.149 14 C -0.162 4.162 15 C -0.170 4.170 16 C 0.044 3.956 17 H 0.109 0.891 18 N -0.366 5.366 19 C 0.349 3.651 20 O -0.420 6.420 21 C -0.196 4.196 22 C -0.009 4.009 23 N -0.179 5.179 24 C 0.021 3.979 25 C -0.115 4.115 26 C -0.113 4.113 27 C -0.140 4.140 28 C -0.105 4.105 29 C -0.116 4.116 30 C -0.016 4.016 31 H 0.065 0.935 32 H 0.219 0.781 33 H 0.035 0.965 34 H 0.039 0.961 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.246 0.754 42 H 0.181 0.819 43 H 0.156 0.844 44 H 0.149 0.851 45 H 0.147 0.853 46 H 0.151 0.849 47 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 15.435 -18.772 -0.926 24.321 hybrid contribution -0.054 0.709 -0.204 0.740 sum 15.381 -18.063 -1.129 23.752 Atomic orbital electron populations 1.69661 1.05126 1.25600 1.57621 1.24736 0.95507 0.97712 1.02864 0.86138 0.78875 0.84130 0.77195 1.20466 1.21863 1.21851 1.19258 0.91051 0.84109 1.42845 0.91107 1.42314 1.05892 0.99659 1.89305 1.20704 0.93475 0.85813 0.97271 1.22228 0.98007 0.93329 0.99178 0.89788 1.22362 1.00849 0.95110 0.96615 1.22493 0.96746 0.96297 1.00704 1.22768 0.97910 0.99384 0.96975 1.21710 0.78606 0.96258 0.98989 0.89108 1.46347 1.08219 1.22441 1.59606 1.17970 0.85495 0.83605 0.77982 1.90755 1.76269 1.26794 1.48172 1.21015 0.94957 0.97896 1.05708 1.23150 0.91551 0.93776 0.92423 1.67998 1.03486 1.30772 1.15659 1.19068 0.94311 0.89899 0.94668 1.20876 0.90575 1.00448 0.99627 1.20996 1.00243 0.93579 0.96517 1.20949 0.95700 0.97355 0.99970 1.21068 0.93102 0.98583 0.97725 1.18846 0.94103 0.96523 1.02171 1.21950 0.91064 0.97966 0.90590 0.93528 0.78111 0.96515 0.96150 0.91125 0.90941 0.91516 0.91586 0.91408 0.91277 0.75356 0.81901 0.84356 0.85073 0.85282 0.84879 0.82917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.76 13.06 55.49 0.72 -27.03 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.19 29.55 -169.99 -5.02 17.16 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 7 C -0.24 -6.57 9.99 -15.06 -0.15 -6.72 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.73 -17.62 5.45 -59.90 -0.33 -17.94 16 10 C 0.16 2.89 4.18 -4.04 -0.02 2.87 16 11 C -0.11 -1.66 2.96 -89.50 -0.27 -1.93 16 12 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 13 C -0.11 -1.62 6.08 -25.07 -0.15 -1.77 16 14 C -0.12 -1.47 6.91 -24.74 -0.17 -1.64 16 15 C -0.13 -1.61 6.53 -25.07 -0.16 -1.77 16 16 C 0.15 2.04 3.21 -66.81 -0.21 1.82 16 17 H 0.09 1.31 7.60 -51.93 -0.39 0.91 16 18 N -0.71 -9.49 4.38 -53.69 -0.24 -9.73 16 19 C 0.56 7.88 7.76 -12.37 -0.10 7.79 16 20 O -0.54 -8.86 16.06 5.31 0.09 -8.77 16 21 C -0.19 -2.39 5.89 -104.83 -0.62 -3.01 16 22 C 0.16 2.07 10.68 -17.10 -0.18 1.89 16 23 N -0.47 -6.32 10.30 -10.68 -0.11 -6.43 16 24 C 0.14 1.70 6.61 -84.79 -0.56 1.14 16 25 C -0.10 -0.93 9.97 -39.48 -0.39 -1.33 16 26 C -0.09 -0.68 9.94 -39.93 -0.40 -1.08 16 27 C -0.12 -0.84 9.96 -39.93 -0.40 -1.23 16 28 C -0.09 -0.70 9.77 -39.47 -0.39 -1.08 16 29 C -0.11 -1.24 5.74 -106.81 -0.61 -1.85 16 30 C 0.01 0.12 9.46 -38.43 -0.36 -0.24 16 31 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 32 H 0.39 9.87 7.55 -40.82 -0.31 9.57 16 33 H 0.02 0.31 7.12 -51.93 -0.37 -0.06 16 34 H 0.02 0.39 7.40 -51.93 -0.38 0.01 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.07 1.13 7.77 -51.93 -0.40 0.73 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.07 0.84 8.05 -51.93 -0.42 0.42 16 41 H 0.41 5.18 3.86 -40.82 -0.16 5.02 16 42 H 0.16 1.82 6.37 -52.49 -0.33 1.48 16 43 H 0.14 1.19 8.06 -52.49 -0.42 0.76 16 44 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16 45 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 46 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 47 H 0.15 1.52 7.70 -52.48 -0.40 1.12 16 LS Contribution 383.77 15.07 5.78 5.78 Total: -1.00 -32.85 383.77 -10.86 -43.71 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: -6.53 Total: 11.83 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: -5.24 Total: -8.58 kcal Atomic # 7 Polarization: -61.19 SS G_CDS: 0.05 Total: -61.14 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: 0.09 Total: -8.77 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.85 -10.86 -43.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667752272.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.570 kcal (2) G-P(sol) polarization free energy of solvation -32.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds