Wall clock time and date at job start Tue Mar 31 2020 22:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00327 * 2 1 4 4 H 1.48494 * 109.47182 * 239.99989 * 3 2 1 5 5 H 1.48495 * 109.46708 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47029 * 119.99838 * 3 2 1 7 7 C 1.38820 * 120.00099 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00133 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99657 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00019 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.47143 * 180.02562 * 10 9 7 12 12 H 1.09004 * 109.47803 * 64.99797 * 11 10 9 13 13 N 1.46503 * 109.46995 * 304.99890 * 11 10 9 14 14 C 1.34781 * 120.00149 * 155.00330 * 13 11 10 15 15 O 1.21284 * 119.99678 * 359.97438 * 14 13 11 16 16 C 1.50696 * 119.99993 * 180.02562 * 14 13 11 17 17 C 1.50699 * 109.47019 * 179.97438 * 16 14 13 18 18 C 1.39376 * 119.49143 * 269.97573 * 17 16 14 19 19 C 1.36169 * 121.08543 * 179.97438 * 18 17 16 20 20 C 1.40379 * 119.51832 * 0.02562 * 19 18 17 21 21 C 1.40424 * 122.07566 * 180.02562 * 20 19 18 22 22 N 1.31250 * 119.88075 * 180.02562 * 21 20 19 23 23 C 1.32606 * 122.77215 * 359.72416 * 22 21 20 24 24 C 1.36176 * 121.87987 * 0.55437 * 23 22 21 25 25 C 1.40696 * 118.66487 * 359.46376 * 24 23 22 26 26 C 1.36217 * 119.49000 * 90.00124 * 17 16 14 27 27 C 1.52999 * 109.47184 * 185.00083 * 11 10 9 28 28 C 1.53004 * 117.49969 * 248.74295 * 27 11 10 29 29 C 1.52997 * 117.50124 * 180.08509 * 27 11 10 30 30 H 0.96999 * 119.99873 * 359.97438 * 1 2 3 31 31 H 0.97000 * 120.00096 * 0.02562 * 9 7 2 32 32 H 1.08997 * 109.47066 * 59.99870 * 10 9 7 33 33 H 1.09001 * 109.46943 * 300.00415 * 10 9 7 34 34 H 0.96997 * 119.99878 * 335.00101 * 13 11 10 35 35 H 1.08999 * 109.47608 * 59.99643 * 16 14 13 36 36 H 1.09008 * 109.46935 * 299.99463 * 16 14 13 37 37 H 1.07995 * 119.45471 * 0.02562 * 18 17 16 38 38 H 1.08001 * 120.24368 * 180.02562 * 19 18 17 39 39 H 1.07996 * 120.06283 * 359.97438 * 21 20 19 40 40 H 1.07998 * 119.06340 * 180.27108 * 23 22 21 41 41 H 1.08002 * 120.67104 * 179.75018 * 24 23 22 42 42 H 1.08006 * 120.26093 * 359.97221 * 26 17 16 43 43 H 1.08999 * 115.55050 * 34.41226 * 27 11 10 44 44 H 1.09000 * 117.49768 * 0.02562 * 28 27 11 45 45 H 1.08996 * 117.49623 * 145.01508 * 28 27 11 46 46 H 1.09001 * 117.50375 * 214.98156 * 29 27 11 47 47 H 1.09000 * 117.49863 * 359.97438 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6569 -0.0005 11 6 1.0637 -4.8197 -0.0012 12 1 0.4978 -4.8135 -0.9328 13 7 0.1438 -4.6762 1.1300 14 6 -1.0807 -5.2371 1.0781 15 8 -1.4211 -5.8601 0.0948 16 6 -2.0271 -5.0890 2.2414 17 6 -3.3181 -5.8024 1.9326 18 6 -4.3504 -5.1104 1.3016 19 6 -5.5302 -5.7232 1.0068 20 6 -5.7113 -7.0738 1.3440 21 6 -6.9051 -7.7585 1.0648 22 7 -7.0280 -9.0216 1.3997 23 6 -6.0602 -9.7033 1.9971 24 6 -4.8671 -9.1293 2.3156 25 6 -4.6599 -7.7769 1.9878 26 6 -3.4584 -7.1133 2.2749 27 6 1.8244 -6.1412 0.1246 28 6 1.8343 -7.0692 -1.0919 29 6 1.0019 -7.4311 0.1406 30 1 -0.4850 0.8400 0.0004 31 1 0.3555 -2.3881 -0.0005 32 1 2.6846 -3.7146 0.8894 33 1 2.6847 -3.7146 -0.8905 34 1 0.4160 -4.1777 1.9162 35 1 -2.2288 -4.0318 2.4136 36 1 -1.5763 -5.5230 3.1340 37 1 -4.2120 -4.0715 1.0414 38 1 -6.3209 -5.1741 0.5172 39 1 -7.7208 -7.2465 0.5763 40 1 -6.2244 -10.7423 2.2420 41 1 -4.0936 -9.7020 2.8057 42 1 -2.6504 -7.6377 2.7635 43 1 2.7230 -6.1096 0.7408 44 1 1.2993 -6.7380 -1.9819 45 1 2.7392 -7.6483 -1.2757 46 1 1.3593 -8.2484 0.7671 47 1 -0.0813 -7.3383 0.0620 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670496625.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:15 Heat of formation + Delta-G solvation = 50.819626 kcal Electronic energy + Delta-G solvation = -28444.295368 eV Core-core repulsion = 24592.731301 eV Total energy + Delta-G solvation = -3851.564067 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.98430 -39.84768 -37.90160 -36.90687 -35.03636 -33.42906 -33.21530 -32.64988 -31.14651 -29.90988 -28.73105 -27.36702 -24.19477 -23.99889 -23.11125 -22.36264 -22.15621 -21.53523 -20.55471 -20.00565 -17.93553 -17.43533 -17.19468 -16.75440 -16.70294 -15.99433 -15.37611 -15.10242 -15.02112 -14.56843 -14.36628 -14.28992 -14.17301 -13.64476 -13.58738 -13.49790 -13.16359 -12.92379 -12.76971 -12.29376 -12.04831 -11.94205 -11.81370 -11.68620 -11.22689 -11.12274 -11.05472 -10.94291 -10.83873 -10.33714 -10.25399 -10.14679 -9.97927 -9.74102 -9.66257 -9.59481 -8.99918 -8.94451 -8.64889 -8.18241 -7.01874 -5.83733 -3.13382 0.23893 0.77525 1.81418 2.85921 2.87094 3.38997 3.43116 3.44559 3.45294 3.95902 4.14606 4.23787 4.36766 4.47878 4.51130 4.68544 4.73522 4.85176 4.90444 4.98498 5.07861 5.15189 5.20014 5.26948 5.28056 5.42730 5.44350 5.49393 5.50501 5.58404 5.68658 5.75786 5.82709 5.87852 5.94027 5.95875 6.05458 6.19008 6.24455 6.33856 6.41183 6.45785 6.49122 6.49393 6.64181 6.72903 6.91438 7.62749 7.81049 7.83357 8.34347 8.51219 9.46294 10.01449 10.37176 11.38575 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013280 B = 0.002656 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.906060 B =10540.181183 C =12189.958751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.011 4.011 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.243 4.243 8 H 0.070 0.930 9 N -0.731 5.731 10 C 0.148 3.852 11 C 0.169 3.831 12 H 0.087 0.913 13 N -0.707 5.707 14 C 0.519 3.481 15 O -0.539 6.539 16 C -0.112 4.112 17 C -0.029 4.029 18 C -0.098 4.098 19 C -0.089 4.089 20 C -0.113 4.113 21 C 0.145 3.855 22 N -0.495 5.495 23 C 0.069 3.931 24 C -0.153 4.153 25 C -0.021 4.021 26 C -0.104 4.104 27 C -0.162 4.162 28 C -0.172 4.172 29 C -0.185 4.185 30 H 0.256 0.744 31 H 0.386 0.614 32 H 0.025 0.975 33 H 0.035 0.965 34 H 0.404 0.596 35 H 0.111 0.889 36 H 0.103 0.897 37 H 0.131 0.869 38 H 0.134 0.866 39 H 0.162 0.838 40 H 0.150 0.850 41 H 0.135 0.865 42 H 0.129 0.871 43 H 0.102 0.898 44 H 0.094 0.906 45 H 0.089 0.911 46 H 0.081 0.919 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.778 -16.978 6.773 19.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.208 4.208 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.374 4.374 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.020 3.980 11 C 0.065 3.935 12 H 0.105 0.895 13 N -0.357 5.357 14 C 0.306 3.694 15 O -0.416 6.416 16 C -0.152 4.152 17 C -0.031 4.031 18 C -0.116 4.116 19 C -0.109 4.109 20 C -0.115 4.115 21 C -0.026 4.026 22 N -0.203 5.203 23 C -0.074 4.074 24 C -0.173 4.173 25 C -0.026 4.026 26 C -0.122 4.122 27 C -0.182 4.182 28 C -0.209 4.209 29 C -0.222 4.222 30 H 0.066 0.934 31 H 0.220 0.780 32 H 0.042 0.958 33 H 0.052 0.948 34 H 0.239 0.761 35 H 0.129 0.871 36 H 0.121 0.879 37 H 0.149 0.851 38 H 0.152 0.848 39 H 0.179 0.821 40 H 0.167 0.833 41 H 0.153 0.847 42 H 0.146 0.854 43 H 0.120 0.880 44 H 0.112 0.888 45 H 0.107 0.893 46 H 0.100 0.900 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.607 -17.854 5.946 20.693 hybrid contribution 1.347 1.671 0.534 2.212 sum -7.260 -16.182 6.480 18.883 Atomic orbital electron populations 1.69647 1.05099 1.25836 1.57402 1.24742 0.95524 0.97699 1.02785 0.86261 0.78530 0.83462 0.77868 1.21246 1.21684 1.21258 1.19170 0.91014 0.84044 1.43195 0.91188 1.42330 1.05961 0.99701 1.89615 1.20915 0.93042 0.85115 0.98942 1.20782 0.90123 0.92656 0.89962 0.89502 1.45951 1.14456 1.54462 1.20815 1.20258 0.82084 0.78794 0.88310 1.90642 1.76042 1.41397 1.33568 1.20812 0.92702 1.03442 0.98256 1.19172 0.94213 0.93769 0.95959 1.20899 0.92691 1.00791 0.97188 1.20934 0.98034 0.92944 0.98967 1.19031 0.95647 0.95542 1.01274 1.23185 0.95133 0.90014 0.94274 1.67405 1.32332 1.08914 1.11630 1.22111 0.89441 0.99892 0.95948 1.21889 0.99209 0.94456 1.01762 1.18110 0.93954 0.93813 0.96709 1.20738 0.96244 0.93999 1.01224 1.22650 1.01431 0.91480 1.02624 1.22889 1.02007 1.03199 0.92820 1.23257 1.00687 0.97421 1.00836 0.93425 0.78028 0.95752 0.94760 0.76090 0.87128 0.87882 0.85149 0.84825 0.82120 0.83287 0.84675 0.85360 0.87954 0.88788 0.89255 0.90009 0.86479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.15 13.06 55.49 0.72 -26.42 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 3 Si 0.91 21.77 29.55 -169.99 -5.02 16.74 16 4 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 7 C -0.24 -6.52 9.99 -15.06 -0.15 -6.67 16 8 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 9 N -0.73 -17.47 5.43 -59.91 -0.33 -17.80 16 10 C 0.15 2.79 5.80 -4.04 -0.02 2.77 16 11 C 0.17 2.74 2.43 -67.93 -0.17 2.57 16 12 H 0.09 1.63 7.34 -51.93 -0.38 1.25 16 13 N -0.71 -10.38 4.50 -53.81 -0.24 -10.62 16 14 C 0.52 7.58 7.16 -10.99 -0.08 7.50 16 15 O -0.54 -9.49 13.06 5.55 0.07 -9.42 16 16 C -0.11 -1.25 5.80 -29.04 -0.17 -1.42 16 17 C -0.03 -0.35 4.34 -104.93 -0.46 -0.81 16 18 C -0.10 -1.16 9.58 -39.90 -0.38 -1.54 16 19 C -0.09 -0.97 9.81 -39.52 -0.39 -1.35 16 20 C -0.11 -1.31 5.74 -106.86 -0.61 -1.93 16 21 C 0.15 1.56 11.05 -16.98 -0.19 1.37 16 22 N -0.49 -5.83 10.30 -13.16 -0.14 -5.97 16 23 C 0.07 0.71 11.07 -17.96 -0.20 0.51 16 24 C -0.15 -1.56 9.88 -39.40 -0.39 -1.95 16 25 C -0.02 -0.25 5.75 -106.81 -0.61 -0.86 16 26 C -0.10 -1.19 9.42 -39.56 -0.37 -1.56 16 27 C -0.16 -2.23 5.36 -90.62 -0.49 -2.71 16 28 C -0.17 -2.24 10.18 -26.69 -0.27 -2.52 16 29 C -0.19 -2.48 9.74 -26.70 -0.26 -2.74 16 30 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 31 H 0.39 9.78 7.33 -40.82 -0.30 9.48 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.40 5.56 8.60 -40.82 -0.35 5.21 16 35 H 0.11 1.16 8.08 -51.93 -0.42 0.74 16 36 H 0.10 0.87 8.07 -51.92 -0.42 0.45 16 37 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 38 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 39 H 0.16 1.23 8.06 -52.49 -0.42 0.81 16 40 H 0.15 1.13 8.06 -52.49 -0.42 0.70 16 41 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 42 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 43 H 0.10 1.31 8.11 -51.93 -0.42 0.89 16 44 H 0.09 1.31 8.05 -51.93 -0.42 0.89 16 45 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 46 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.12 1.83 5.02 -51.93 -0.26 1.57 16 LS Contribution 393.46 15.07 5.93 5.93 Total: -1.00 -32.77 393.46 -11.04 -43.82 By element: Atomic # 1 Polarization: 22.22 SS G_CDS: -6.74 Total: 15.48 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: -5.30 Total: -11.74 kcal Atomic # 7 Polarization: -60.83 SS G_CDS: 0.02 Total: -60.81 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.07 Total: -9.42 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.77 -11.04 -43.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670496625.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.638 kcal (2) G-P(sol) polarization free energy of solvation -32.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds