Wall clock time and date at job start Tue Mar 31 2020 22:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34755 * 116.99997 * 2 1 4 4 O 1.21466 * 120.00292 * 359.97438 * 3 2 1 5 5 C 1.47473 * 119.99507 * 179.97438 * 3 2 1 6 6 N 1.29253 * 125.87043 * 0.02562 * 5 3 2 7 7 O 1.41809 * 112.89049 * 180.24598 * 6 5 3 8 8 C 1.42484 * 107.21908 * 344.07797 * 7 6 5 9 9 C 1.53642 * 112.29839 * 144.12056 * 8 7 6 10 10 C 1.55403 * 101.32980 * 88.67832 * 9 8 7 11 11 N 1.47562 * 104.89560 * 35.77725 * 10 9 8 12 12 C 1.34779 * 125.67654 * 156.09200 * 11 10 9 13 13 O 1.21591 * 120.00286 * 179.69299 * 12 11 10 14 14 N 1.34774 * 120.00086 * 359.69628 * 12 11 10 15 15 C 1.46497 * 120.00288 * 179.97438 * 14 12 11 16 16 C 1.53000 * 109.47302 * 180.02562 * 15 14 12 17 17 C 1.53001 * 109.47355 * 180.02562 * 16 15 14 18 18 C 1.50694 * 109.47168 * 179.97438 * 17 16 15 19 19 H 1.08000 * 120.00563 * 359.97438 * 18 17 16 20 20 C 1.37885 * 119.99902 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99913 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99854 * 179.72538 * 20 18 17 23 23 H 1.48504 * 109.47032 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.46816 * 120.00323 * 22 20 18 25 25 H 1.48495 * 109.46630 * 240.00111 * 22 20 18 26 26 C 1.47409 * 108.64908 * 335.83209 * 11 10 9 27 27 C 1.52038 * 125.86042 * 180.02562 * 5 3 2 28 28 H 1.08999 * 109.46971 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47019 * 300.00243 * 1 2 3 30 30 H 1.08999 * 109.46717 * 60.00032 * 1 2 3 31 31 H 1.09002 * 111.03276 * 206.88124 * 9 8 7 32 32 H 1.08993 * 111.03726 * 330.81075 * 9 8 7 33 33 H 1.09005 * 110.46457 * 276.89347 * 10 9 8 34 34 H 1.08997 * 110.31215 * 154.58894 * 10 9 8 35 35 H 0.97010 * 119.99697 * 359.97438 * 14 12 11 36 36 H 1.09000 * 109.47237 * 60.00287 * 15 14 12 37 37 H 1.09002 * 109.47081 * 299.99975 * 15 14 12 38 38 H 1.09000 * 109.46966 * 59.99845 * 16 15 14 39 39 H 1.09002 * 109.46807 * 299.99867 * 16 15 14 40 40 H 1.08998 * 109.46837 * 59.99832 * 17 16 15 41 41 H 1.09002 * 109.46926 * 299.99636 * 17 16 15 42 42 H 0.97001 * 119.99646 * 180.02562 * 21 20 18 43 43 H 1.09007 * 109.98119 * 121.67402 * 26 11 10 44 44 H 1.08991 * 109.98344 * 242.97338 * 26 11 10 45 45 H 1.08999 * 110.86250 * 75.88835 * 27 5 3 46 46 H 1.08997 * 110.86586 * 312.21865 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2007 0.0000 4 8 1.4023 2.2194 -0.0005 5 6 3.5365 1.2777 0.0006 6 7 4.3476 0.2713 0.0006 7 8 5.7109 0.6616 0.0068 8 6 5.7576 2.0370 -0.3623 9 6 6.8583 2.8044 0.3860 10 6 8.0733 2.5955 -0.5602 11 7 7.5028 2.6187 -1.9209 12 6 8.1728 2.9268 -3.0490 13 8 7.5995 2.9079 -4.1211 14 7 9.4784 3.2557 -2.9888 15 6 10.2069 3.5900 -4.2151 16 6 11.6601 3.9221 -3.8706 17 6 12.4208 4.2719 -5.1512 18 6 13.8520 4.5997 -4.8117 19 1 14.1856 4.5627 -3.7852 20 6 14.7356 4.9468 -5.8117 21 7 14.3292 4.9923 -7.0617 22 14 16.5077 5.3606 -5.3900 23 1 16.7083 5.2417 -3.9234 24 1 17.4163 4.4185 -6.0914 25 1 16.8073 6.7500 -5.8201 26 6 6.0796 2.2428 -1.8418 27 6 4.3616 2.5548 0.0012 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 6.6061 3.8609 0.4769 32 1 7.0467 2.3633 1.3647 33 1 8.5476 1.6338 -0.3647 34 1 8.7924 3.4053 -0.4371 35 1 9.9358 3.2710 -2.1335 36 1 9.7400 4.4519 -4.6916 37 1 10.1807 2.7396 -4.8965 38 1 12.1268 3.0599 -3.3943 39 1 11.6867 4.7724 -3.1890 40 1 11.9539 5.1343 -5.6270 41 1 12.3943 3.4219 -5.8331 42 1 14.9509 5.2362 -7.7652 43 1 5.4602 3.0414 -2.2503 44 1 5.9074 1.3184 -2.3927 45 1 4.3633 3.0153 0.9891 46 1 3.9977 3.2524 -0.7531 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001684143386.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:28 Heat of formation + Delta-G solvation = -107.713255 kcal Electronic energy + Delta-G solvation = -28540.825968 eV Core-core repulsion = 24239.245386 eV Total energy + Delta-G solvation = -4301.580583 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.50620 -41.53390 -40.83427 -38.13600 -37.80205 -36.92567 -35.21629 -34.57684 -33.51246 -32.51372 -30.67377 -29.09192 -28.90237 -27.49139 -25.64854 -24.98268 -24.16822 -22.31420 -22.22125 -21.37009 -21.07242 -19.33434 -18.77289 -18.50575 -18.23564 -17.74828 -17.30950 -17.10562 -17.07858 -16.50752 -16.39851 -16.22386 -15.69466 -15.42346 -15.10879 -14.88977 -14.65008 -14.36517 -14.29481 -14.10605 -13.87684 -13.66373 -13.57092 -13.34931 -13.13673 -12.84133 -12.77711 -12.76294 -12.53849 -12.36684 -12.31953 -12.19641 -11.99831 -11.96811 -11.67431 -11.66702 -11.33818 -11.15416 -10.92970 -10.54930 -10.31397 -9.62784 -8.18315 -6.29695 -0.55248 0.93827 1.39310 1.41308 1.43030 1.43663 1.56429 1.77915 2.02779 2.42860 2.89380 2.91190 3.06346 3.15745 3.16742 3.21386 3.40445 3.97744 4.11307 4.16413 4.19169 4.21618 4.22613 4.31159 4.34695 4.39507 4.47504 4.55752 4.59946 4.64711 4.69842 4.83075 4.95269 4.95777 4.97115 5.01334 5.12623 5.18228 5.43958 5.54146 5.71967 5.72188 5.85314 5.90491 6.23542 6.30485 6.86377 6.90063 7.39904 7.45383 8.94004 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.036902 B = 0.001588 C = 0.001557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.591945 B =17629.045359 C =17980.548453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.351 6.351 3 C 0.547 3.453 4 O -0.490 6.490 5 C 0.062 3.938 6 N -0.234 5.234 7 O -0.168 6.168 8 C 0.056 3.944 9 C -0.104 4.104 10 C 0.088 3.912 11 N -0.636 5.636 12 C 0.715 3.285 13 O -0.639 6.639 14 N -0.725 5.725 15 C 0.149 3.851 16 C -0.099 4.099 17 C 0.022 3.978 18 C -0.539 4.539 19 H 0.068 0.932 20 C -0.004 4.004 21 N -0.935 5.935 22 Si 0.968 3.032 23 H -0.257 1.257 24 H -0.281 1.281 25 H -0.280 1.280 26 C 0.117 3.883 27 C -0.107 4.107 28 H 0.134 0.866 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.127 0.873 32 H 0.125 0.875 33 H 0.078 0.922 34 H 0.102 0.898 35 H 0.411 0.589 36 H 0.049 0.951 37 H 0.044 0.956 38 H 0.067 0.933 39 H 0.071 0.929 40 H -0.007 1.007 41 H -0.009 1.009 42 H 0.263 0.737 43 H 0.089 0.911 44 H 0.052 0.948 45 H 0.154 0.846 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.696 -6.898 24.340 36.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.266 6.266 3 C 0.388 3.612 4 O -0.375 6.375 5 C -0.131 4.131 6 N 0.022 4.978 7 O -0.190 6.190 8 C 0.015 3.985 9 C -0.142 4.142 10 C -0.033 4.033 11 N -0.374 5.374 12 C 0.417 3.583 13 O -0.521 6.521 14 N -0.381 5.381 15 C 0.025 3.975 16 C -0.137 4.137 17 C -0.015 4.015 18 C -0.577 4.577 19 H 0.086 0.914 20 C -0.201 4.201 21 N -0.576 5.576 22 Si 0.792 3.208 23 H -0.181 1.181 24 H -0.207 1.207 25 H -0.206 1.206 26 C -0.007 4.007 27 C -0.146 4.146 28 H 0.152 0.848 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.145 0.855 32 H 0.143 0.857 33 H 0.096 0.904 34 H 0.121 0.879 35 H 0.248 0.752 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.012 0.988 41 H 0.010 0.990 42 H 0.071 0.929 43 H 0.107 0.893 44 H 0.071 0.929 45 H 0.172 0.828 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -27.028 -7.758 23.377 36.567 hybrid contribution 0.891 0.821 -0.548 1.330 sum -26.137 -6.938 22.829 35.389 Atomic orbital electron populations 1.23788 0.72694 1.06483 1.03603 1.86660 1.26400 1.30733 1.82809 1.19548 0.85894 0.82440 0.73341 1.90927 1.65488 1.36318 1.44784 1.25182 0.92322 0.96103 0.99497 1.78806 0.90230 1.23085 1.05699 1.91190 1.15102 1.26167 1.86563 1.22985 0.97978 0.83120 0.94435 1.22908 0.90102 1.02216 0.99013 1.22773 0.97714 1.03603 0.79240 1.47546 1.11032 1.72432 1.06390 1.15613 0.81824 0.78027 0.82837 1.90899 1.69334 1.62456 1.29406 1.45015 1.08213 1.73335 1.11505 1.21118 0.91813 0.99146 0.85456 1.21585 0.91544 1.01471 0.99110 1.18955 0.94514 0.94925 0.93144 1.21711 0.95957 1.45932 0.94126 0.91390 1.26028 1.03857 0.95402 0.94833 1.70126 1.36974 1.49672 1.00795 0.85359 0.78817 0.77632 0.78977 1.18067 1.20722 1.20623 1.22038 0.82116 1.00937 0.95634 1.22848 0.87482 0.95267 1.08970 0.84823 0.90510 0.91001 0.85458 0.85691 0.90410 0.87946 0.75164 0.93257 0.93714 0.91389 0.91055 0.98823 0.99032 0.92872 0.89296 0.92918 0.82789 0.84973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.57 113.37 1.20 1.37 16 2 O -0.35 -4.91 10.56 -56.65 -0.60 -5.51 16 3 C 0.55 8.22 7.96 70.26 0.56 8.78 16 4 O -0.49 -8.51 16.75 19.94 0.33 -8.18 16 5 C 0.06 0.88 7.33 45.80 0.34 1.22 16 6 N -0.23 -4.35 12.54 -42.00 -0.53 -4.88 16 7 O -0.17 -3.05 12.01 -39.25 -0.47 -3.52 16 8 C 0.06 0.71 1.09 -10.55 -0.01 0.69 16 9 C -0.10 -0.69 6.22 31.64 0.20 -0.49 16 10 C 0.09 1.10 6.61 87.00 0.57 1.67 16 11 N -0.64 -14.15 3.34 -830.38 -2.77 -16.92 16 12 C 0.72 22.70 8.49 179.05 1.52 24.22 16 13 O -0.64 -26.72 16.67 -4.00 -0.07 -26.79 16 14 N -0.72 -20.93 5.52 -478.54 -2.64 -23.57 16 15 C 0.15 5.41 5.67 86.38 0.49 5.90 16 16 C -0.10 -3.80 5.27 30.59 0.16 -3.64 16 17 C 0.02 1.16 4.97 29.85 0.15 1.31 16 18 C -0.54 -29.95 9.11 25.60 0.23 -29.71 16 19 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 20 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 21 N -0.94 -57.20 13.29 21.45 0.28 -56.91 16 22 Si 0.97 43.63 29.54 68.60 2.03 45.66 16 23 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 24 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 25 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 26 C 0.12 2.31 6.34 86.14 0.55 2.85 16 27 C -0.11 -0.91 6.04 30.37 0.18 -0.73 16 28 H 0.13 0.19 8.14 -2.39 -0.02 0.17 16 29 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.13 0.28 8.07 -2.39 -0.02 0.26 16 32 H 0.12 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 34 H 0.10 0.91 7.30 -2.39 -0.02 0.90 16 35 H 0.41 8.87 6.96 -92.70 -0.64 8.22 16 36 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 39 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 40 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 41 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 42 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 43 H 0.09 1.67 7.45 -2.38 -0.02 1.65 16 44 H 0.05 1.31 8.08 -2.39 -0.02 1.29 16 45 H 0.15 0.39 7.93 -2.39 -0.02 0.37 16 46 H 0.13 0.91 7.45 -2.39 -0.02 0.90 16 Total: -1.00 -81.63 391.51 2.53 -79.10 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: 0.36 Total: 7.81 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: 6.60 Total: 13.70 kcal Atomic # 7 Polarization: -96.63 SS G_CDS: -5.66 Total: -102.28 kcal Atomic # 8 Polarization: -43.19 SS G_CDS: -0.80 Total: -43.99 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -81.63 2.53 -79.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001684143386.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.611 kcal (2) G-P(sol) polarization free energy of solvation -81.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds