Wall clock time and date at job start Tue Mar 31 2020 22:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86801 * 120.00063 * 2 1 4 4 H 1.48501 * 109.46872 * 269.99810 * 3 2 1 5 5 H 1.48500 * 109.46842 * 29.99922 * 3 2 1 6 6 H 1.48498 * 109.47114 * 149.99946 * 3 2 1 7 7 C 1.38809 * 119.99575 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00643 * 0.02562 * 7 2 1 9 9 N 1.36939 * 119.99625 * 179.97438 * 7 2 1 10 10 C 1.46499 * 120.00053 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47383 * 180.02562 * 10 9 7 12 12 H 1.08998 * 109.47096 * 64.99937 * 11 10 9 13 13 N 1.46497 * 109.47008 * 305.00085 * 11 10 9 14 14 C 1.34776 * 119.99870 * 154.99783 * 13 11 10 15 15 O 1.21275 * 120.00323 * 0.02562 * 14 13 11 16 16 C 1.50706 * 119.99699 * 179.97438 * 14 13 11 17 17 C 1.50703 * 109.46880 * 180.02562 * 16 14 13 18 18 C 1.36111 * 120.12653 * 265.00471 * 17 16 14 19 19 C 1.39312 * 121.06878 * 180.28105 * 18 17 16 20 20 C 1.36184 * 120.86393 * 359.48759 * 19 18 17 21 21 C 1.40385 * 119.61202 * 0.48635 * 20 19 18 22 22 C 1.40786 * 121.37477 * 179.75996 * 21 20 19 23 23 C 1.36566 * 118.14760 * 180.02562 * 22 21 20 24 24 C 1.39343 * 119.94201 * 359.97438 * 23 22 21 25 25 N 1.31083 * 121.74892 * 0.02562 * 24 23 22 26 26 C 1.33681 * 121.32533 * 359.95877 * 25 24 23 27 27 C 1.53004 * 109.47136 * 184.99647 * 11 10 9 28 28 C 1.52992 * 117.49791 * 248.74484 * 27 11 10 29 29 C 1.53000 * 117.49658 * 180.08552 * 27 11 10 30 30 H 0.97004 * 119.99886 * 0.02562 * 1 2 3 31 31 H 0.97004 * 120.00354 * 0.02562 * 9 7 2 32 32 H 1.08996 * 109.47201 * 59.99524 * 10 9 7 33 33 H 1.09005 * 109.47110 * 299.99904 * 10 9 7 34 34 H 0.96997 * 120.00040 * 334.99539 * 13 11 10 35 35 H 1.09001 * 109.47006 * 60.00324 * 16 14 13 36 36 H 1.09002 * 109.47130 * 300.00134 * 16 14 13 37 37 H 1.08002 * 119.46321 * 359.97438 * 18 17 16 38 38 H 1.07996 * 119.56904 * 179.71937 * 19 18 17 39 39 H 1.07998 * 120.19145 * 180.26367 * 20 19 18 40 40 H 1.07995 * 120.92334 * 359.97438 * 22 21 20 41 41 H 1.08007 * 120.03264 * 179.97438 * 23 22 21 42 42 H 1.07996 * 119.12285 * 179.97438 * 24 23 22 43 43 H 1.09002 * 115.54957 * 34.42062 * 27 11 10 44 44 H 1.08997 * 117.50563 * 0.02562 * 28 27 11 45 45 H 1.09004 * 117.49740 * 145.02507 * 28 27 11 46 46 H 1.08997 * 117.49783 * 214.98094 * 29 27 11 47 47 H 1.09000 * 117.49974 * 0.02562 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1121 -2.4709 0.0000 11 6 5.6163 -2.1914 0.0000 12 1 5.8942 -1.6980 0.9314 13 7 5.9517 -1.3233 -1.1314 14 6 7.0496 -0.5433 -1.0800 15 8 7.7602 -0.5604 -0.0974 16 6 7.3949 0.3493 -2.2442 17 6 8.6589 1.1100 -1.9363 18 6 8.5909 2.3650 -1.4140 19 6 9.7467 3.0881 -1.1274 20 6 10.9789 2.5538 -1.3528 21 6 11.0868 1.2615 -1.8904 22 6 12.3416 0.6751 -2.1429 23 6 12.3698 -0.5855 -2.6674 24 6 11.1770 -1.2537 -2.9364 25 7 10.0104 -0.7047 -2.7000 26 6 9.9125 0.5259 -2.1872 27 6 6.3803 -3.5111 -0.1256 28 6 7.1793 -3.9833 1.0906 29 6 7.9087 -3.4437 -0.1422 30 1 -0.4850 0.8401 -0.0004 31 1 3.8647 -0.3621 -0.0004 32 1 3.8484 -3.0427 -0.8897 33 1 3.8491 -3.0423 0.8903 34 1 5.3836 -1.3099 -1.9175 35 1 6.5802 1.0525 -2.4170 36 1 7.5453 -0.2588 -3.1362 37 1 7.6252 2.8094 -1.2233 38 1 9.6645 4.0839 -0.7177 39 1 11.8678 3.1224 -1.1226 40 1 13.2563 1.2078 -1.9286 41 1 13.3158 -1.0642 -2.8735 42 1 11.2148 -2.2500 -3.3515 43 1 5.9034 -4.2736 -0.7416 44 1 7.1605 -3.3542 1.9805 45 1 7.2285 -5.0566 1.2747 46 1 8.4374 -4.1621 -0.7687 47 1 8.3700 -2.4593 -0.0632 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699586006.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:15 Heat of formation + Delta-G solvation = 36.857332 kcal Electronic energy + Delta-G solvation = -29227.586659 eV Core-core repulsion = 25375.417142 eV Total energy + Delta-G solvation = -3852.169518 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.90968 -40.93239 -38.64613 -37.89582 -36.76437 -35.01649 -34.97788 -33.35418 -32.29118 -31.44237 -30.27998 -28.31422 -25.73115 -25.07950 -24.50202 -23.37723 -23.04930 -22.65132 -21.43283 -21.20196 -19.80171 -19.17509 -18.03650 -17.91553 -17.80133 -17.13890 -16.75734 -16.52628 -16.11266 -15.67739 -15.43615 -15.29634 -15.19076 -14.87654 -14.80172 -14.71641 -14.44097 -13.99701 -13.86410 -13.77398 -13.56770 -12.99348 -12.90180 -12.72524 -12.65565 -12.58459 -12.51350 -12.27893 -12.12790 -12.11156 -11.84959 -11.43035 -11.27508 -11.12190 -11.03472 -10.72881 -10.37290 -9.95154 -9.68639 -9.33792 -9.10867 -8.04276 -5.38036 -0.52103 -0.08452 1.04211 1.34567 1.38046 1.44827 1.70318 1.99042 2.25168 2.45648 3.00090 3.19358 3.27391 3.40493 3.41402 3.54110 3.81310 3.84388 3.90129 3.98718 4.02834 4.08889 4.12331 4.13813 4.27198 4.30656 4.37845 4.41246 4.46626 4.57591 4.58961 4.63433 4.80094 4.87189 4.89055 5.02638 5.06966 5.09278 5.15312 5.17052 5.26614 5.37559 5.46507 5.48094 5.57473 5.64338 5.74526 5.96510 6.19125 6.61569 7.02578 7.04790 7.31878 7.79642 7.99034 9.17113 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012302 B = 0.003529 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.417024 B = 7932.591376 C = 9663.475545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.059 4.059 3 Si 0.949 3.051 4 H -0.267 1.267 5 H -0.296 1.296 6 H -0.267 1.267 7 C -0.232 4.232 8 H 0.062 0.938 9 N -0.755 5.755 10 C 0.154 3.846 11 C 0.178 3.822 12 H 0.062 0.938 13 N -0.712 5.712 14 C 0.525 3.475 15 O -0.568 6.568 16 C -0.094 4.094 17 C -0.061 4.061 18 C -0.106 4.106 19 C -0.121 4.121 20 C -0.099 4.099 21 C -0.126 4.126 22 C -0.061 4.061 23 C -0.176 4.176 24 C 0.118 3.882 25 N -0.498 5.498 26 C 0.115 3.885 27 C -0.163 4.163 28 C -0.166 4.166 29 C -0.175 4.175 30 H 0.258 0.742 31 H 0.364 0.636 32 H 0.046 0.954 33 H 0.040 0.960 34 H 0.410 0.590 35 H 0.115 0.885 36 H 0.117 0.883 37 H 0.134 0.866 38 H 0.152 0.848 39 H 0.160 0.840 40 H 0.169 0.831 41 H 0.170 0.830 42 H 0.179 0.821 43 H 0.120 0.880 44 H 0.080 0.920 45 H 0.114 0.886 46 H 0.098 0.902 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.957 0.843 -7.532 30.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.632 5.632 2 C -0.251 4.251 3 Si 0.777 3.223 4 H -0.192 1.192 5 H -0.223 1.223 6 H -0.192 1.192 7 C -0.363 4.363 8 H 0.080 0.920 9 N -0.401 5.401 10 C 0.028 3.972 11 C 0.073 3.927 12 H 0.080 0.920 13 N -0.363 5.363 14 C 0.313 3.687 15 O -0.448 6.448 16 C -0.134 4.134 17 C -0.062 4.062 18 C -0.126 4.126 19 C -0.139 4.139 20 C -0.117 4.117 21 C -0.128 4.128 22 C -0.087 4.087 23 C -0.195 4.195 24 C -0.054 4.054 25 N -0.206 5.206 26 C -0.006 4.006 27 C -0.182 4.182 28 C -0.204 4.204 29 C -0.212 4.212 30 H 0.067 0.933 31 H 0.198 0.802 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.246 0.754 35 H 0.133 0.867 36 H 0.136 0.864 37 H 0.151 0.849 38 H 0.170 0.830 39 H 0.178 0.822 40 H 0.187 0.813 41 H 0.188 0.812 42 H 0.196 0.804 43 H 0.138 0.862 44 H 0.099 0.901 45 H 0.132 0.868 46 H 0.117 0.883 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 29.380 0.343 -6.989 30.202 hybrid contribution 0.084 1.343 0.089 1.348 sum 29.464 1.686 -6.900 30.308 Atomic orbital electron populations 1.69872 1.06978 1.26652 1.59660 1.25424 0.96011 1.00930 1.02698 0.85495 0.78075 0.80192 0.78541 1.19222 1.22328 1.19219 1.19032 0.82395 0.93632 1.41209 0.91992 1.42669 1.02566 1.03867 1.91039 1.21005 0.88274 0.87957 0.99970 1.20539 0.93355 0.89340 0.89435 0.92025 1.45986 1.26942 1.42767 1.20629 1.20702 0.79799 0.79763 0.88447 1.90592 1.51056 1.67956 1.35177 1.20561 0.96348 0.98683 0.97782 1.19094 0.92456 0.94622 1.00051 1.21084 1.00356 0.94053 0.97094 1.21190 0.91865 1.01211 0.99589 1.21345 0.99247 0.93507 0.97627 1.19177 0.94525 0.96863 1.02186 1.21867 0.96968 0.95466 0.94361 1.22241 1.00857 0.95889 1.00531 1.23507 0.87565 1.00550 0.93796 1.67957 1.29548 1.10176 1.12939 1.18841 0.93152 0.90976 0.97597 1.22548 0.93789 0.98185 1.03727 1.22979 1.03649 1.01819 0.91950 1.23098 0.93612 1.03231 1.01283 0.93281 0.80236 0.93603 0.94189 0.75430 0.86686 0.86448 0.84857 0.82996 0.82221 0.81329 0.81208 0.80434 0.86225 0.90108 0.86765 0.88332 0.89068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.58 13.97 21.65 0.30 -62.28 16 2 C -0.06 -3.46 5.50 84.86 0.47 -2.99 16 3 Si 0.95 45.64 27.74 68.60 1.90 47.54 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.30 -14.50 7.11 99.48 0.71 -13.80 16 6 H -0.27 -12.20 6.52 99.48 0.65 -11.55 16 7 C -0.23 -13.09 10.47 84.03 0.88 -12.21 16 8 H 0.06 3.80 8.06 -2.91 -0.02 3.78 16 9 N -0.76 -34.99 5.24 -343.46 -1.80 -36.79 16 10 C 0.15 5.77 5.80 86.38 0.50 6.27 16 11 C 0.18 5.82 2.43 44.99 0.11 5.93 16 12 H 0.06 2.34 7.34 -2.39 -0.02 2.32 16 13 N -0.71 -21.66 4.50 -442.54 -1.99 -23.65 16 14 C 0.52 16.57 7.16 87.66 0.63 17.20 16 15 O -0.57 -21.49 13.06 -3.01 -0.04 -21.52 16 16 C -0.09 -2.45 5.56 29.10 0.16 -2.28 16 17 C -0.06 -1.65 4.38 -19.79 -0.09 -1.73 16 18 C -0.11 -2.53 9.57 22.03 0.21 -2.32 16 19 C -0.12 -2.31 9.96 22.05 0.22 -2.09 16 20 C -0.10 -1.76 9.78 22.31 0.22 -1.54 16 21 C -0.13 -2.71 5.74 -21.28 -0.12 -2.83 16 22 C -0.06 -0.92 9.90 22.50 0.22 -0.69 16 23 C -0.18 -2.41 10.03 22.14 0.22 -2.18 16 24 C 0.12 2.19 11.15 85.07 0.95 3.13 16 25 N -0.50 -12.82 9.51 -188.64 -1.79 -14.61 16 26 C 0.12 3.08 6.58 40.29 0.27 3.35 16 27 C -0.16 -4.48 5.36 -10.79 -0.06 -4.54 16 28 C -0.17 -4.29 10.18 30.62 0.31 -3.97 16 29 C -0.18 -4.84 9.74 30.62 0.30 -4.54 16 30 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 31 H 0.36 16.61 5.20 -92.71 -0.48 16.13 16 32 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 34 H 0.41 11.36 8.60 -92.71 -0.80 10.56 16 35 H 0.12 2.56 8.04 -2.39 -0.02 2.54 16 36 H 0.12 2.83 7.71 -2.39 -0.02 2.81 16 37 H 0.13 2.87 8.04 -2.91 -0.02 2.85 16 38 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 39 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 40 H 0.17 1.28 8.06 -2.91 -0.02 1.26 16 41 H 0.17 1.01 8.06 -2.91 -0.02 0.99 16 42 H 0.18 2.20 8.06 -2.91 -0.02 2.18 16 43 H 0.12 2.94 8.11 -2.39 -0.02 2.92 16 44 H 0.08 2.28 8.05 -2.39 -0.02 2.26 16 45 H 0.11 2.38 8.14 -2.38 -0.02 2.36 16 46 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 47 H 0.09 3.11 5.02 -2.39 -0.01 3.10 16 Total: -1.00 -77.62 389.34 1.64 -75.98 By element: Atomic # 1 Polarization: 43.71 SS G_CDS: -0.34 Total: 43.37 kcal Atomic # 6 Polarization: -13.44 SS G_CDS: 5.40 Total: -8.04 kcal Atomic # 7 Polarization: -132.04 SS G_CDS: -5.28 Total: -137.32 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -0.04 Total: -21.52 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 1.90 Total: 47.54 kcal Total: -77.62 1.64 -75.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699586006.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.833 kcal (2) G-P(sol) polarization free energy of solvation -77.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds