Wall clock time and date at job start Tue Mar 31 2020 22:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86804 * 119.99537 * 2 1 4 4 H 1.48497 * 109.47152 * 270.00258 * 3 2 1 5 5 H 1.48504 * 109.46833 * 30.00660 * 3 2 1 6 6 H 1.48503 * 109.46896 * 150.00202 * 3 2 1 7 7 C 1.38812 * 120.00535 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99631 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99652 * 359.97438 * 7 2 1 10 10 C 1.46503 * 119.99242 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46367 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.46818 * 179.97438 * 11 10 9 13 13 H 1.09000 * 110.88361 * 57.43071 * 12 11 10 14 14 C 1.55164 * 111.00443 * 181.35047 * 12 11 10 15 15 C 1.54333 * 103.01906 * 153.38318 * 14 12 11 16 16 N 1.47023 * 107.26652 * 338.14136 * 15 14 12 17 17 C 1.34779 * 125.64594 * 178.85293 * 16 15 14 18 18 O 1.21558 * 119.99640 * 174.34834 * 17 16 15 19 19 C 1.47767 * 119.99956 * 354.61931 * 17 16 15 20 20 C 1.40635 * 119.80332 * 187.92354 * 19 17 16 21 21 C 1.35700 * 120.92110 * 180.02562 * 20 19 17 22 22 C 1.40760 * 120.11375 * 359.97438 * 21 20 19 23 23 N 1.33648 * 120.84061 * 180.02562 * 22 21 20 24 24 C 1.31122 * 121.39549 * 179.97438 * 23 22 21 25 25 C 1.39315 * 121.77124 * 359.97438 * 24 23 22 26 26 C 1.36575 * 119.90115 * 0.02562 * 25 24 23 27 27 C 1.40889 * 118.16194 * 0.02562 * 26 25 24 28 28 C 1.38540 * 119.80633 * 7.64501 * 19 17 16 29 29 C 1.47424 * 108.70270 * 358.58438 * 16 15 14 30 30 H 0.96992 * 120.00594 * 359.97438 * 1 2 3 31 31 H 0.96990 * 120.00041 * 359.97438 * 9 7 2 32 32 H 1.08992 * 109.47500 * 60.00636 * 10 9 7 33 33 H 1.08994 * 109.47232 * 299.99549 * 10 9 7 34 34 H 1.09001 * 109.47191 * 60.00416 * 11 10 9 35 35 H 1.08998 * 109.47469 * 300.00447 * 11 10 9 36 36 H 1.08999 * 110.72007 * 271.94795 * 14 12 11 37 37 H 1.09004 * 110.71663 * 35.03453 * 14 12 11 38 38 H 1.09000 * 109.98836 * 218.66610 * 15 14 12 39 39 H 1.08997 * 109.77667 * 97.50281 * 15 14 12 40 40 H 1.08000 * 119.53521 * 359.97438 * 20 19 17 41 41 H 1.08004 * 119.93942 * 179.97438 * 21 20 19 42 42 H 1.08000 * 119.11400 * 180.02562 * 24 23 22 43 43 H 1.08001 * 120.04459 * 180.02562 * 25 24 23 44 44 H 1.07997 * 120.91829 * 179.97438 * 26 25 24 45 45 H 1.08000 * 120.30030 * 359.97438 * 28 19 17 46 46 H 1.09003 * 110.36567 * 143.19549 * 29 16 15 47 47 H 1.08994 * 110.36826 * 265.51541 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0466 -1.4000 5 1 1.4475 2.6526 0.7002 6 1 3.5477 1.4403 0.7000 7 6 2.0104 -1.2021 -0.0005 8 1 3.0904 -1.2019 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0585 -3.6567 -0.0017 11 6 1.0642 -4.8196 -0.0008 12 6 1.8294 -6.1446 -0.0026 13 1 2.4997 -6.2074 0.8546 14 6 0.8534 -7.3504 -0.0359 15 6 1.6922 -8.4582 -0.7075 16 7 2.7612 -7.7953 -1.4687 17 6 3.7211 -8.4185 -2.1805 18 8 4.4953 -7.7689 -2.8559 19 6 3.8286 -9.8918 -2.1445 20 6 4.9272 -10.5275 -2.7502 21 6 5.0483 -11.8790 -2.7311 22 6 4.0681 -12.6670 -2.0992 23 7 4.1731 -13.9991 -2.0713 24 6 3.2667 -14.7436 -1.4853 25 6 2.1512 -14.1876 -0.8630 26 6 1.9813 -12.8325 -0.8541 27 6 2.9567 -12.0359 -1.4857 28 6 2.8496 -10.6384 -1.5093 29 6 2.6054 -6.3359 -1.3296 30 1 -0.4850 0.8399 0.0004 31 1 0.3558 -2.3881 0.0002 32 1 2.6857 -3.7148 0.8878 33 1 2.6843 -3.7139 -0.8921 34 1 0.4366 -4.7618 -0.8901 35 1 0.4385 -4.7621 0.8899 36 1 0.5646 -7.6408 0.9742 37 1 -0.0269 -7.1176 -0.6351 38 1 1.0658 -9.0434 -1.3808 39 1 2.1262 -9.1054 0.0546 40 1 5.6845 -9.9318 -3.2380 41 1 5.8984 -12.3506 -3.2017 42 1 3.3887 -15.8167 -1.4844 43 1 1.4219 -14.8273 -0.3883 44 1 1.1225 -12.3841 -0.3769 45 1 2.0091 -10.1484 -1.0404 46 1 3.5813 -5.8541 -1.2711 47 1 2.0325 -5.9342 -2.1653 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700075687.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:15 Heat of formation + Delta-G solvation = 53.375714 kcal Electronic energy + Delta-G solvation = -27809.460210 eV Core-core repulsion = 23958.006984 eV Total energy + Delta-G solvation = -3851.453227 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.45281 -40.29305 -38.12759 -36.98979 -35.28400 -34.07431 -33.10121 -31.34198 -30.95530 -30.63967 -29.58995 -27.21103 -25.65250 -24.47902 -23.75286 -23.49272 -22.34957 -21.31782 -20.58541 -20.07248 -18.77387 -17.69776 -17.29908 -17.10016 -16.53745 -16.27416 -15.67135 -15.06074 -14.93914 -14.73578 -14.56794 -14.48796 -14.12308 -13.79562 -13.67433 -13.46765 -13.38198 -13.21719 -13.00262 -12.90291 -12.60913 -12.08655 -12.01670 -11.79972 -11.69407 -11.25451 -11.11646 -11.04792 -10.83695 -10.69157 -10.50945 -10.37574 -10.18649 -9.99867 -9.88234 -9.66883 -9.27053 -8.86459 -8.85884 -8.74592 -6.91151 -5.75678 -3.04222 -0.23331 0.25191 1.44796 2.06381 2.67782 2.98781 3.45112 3.50198 3.51745 3.67719 3.78655 4.01036 4.08081 4.22612 4.26108 4.38951 4.47109 4.58117 4.61616 4.65774 4.69514 4.84291 4.92607 4.98301 5.04644 5.27816 5.28487 5.38885 5.43740 5.50340 5.55118 5.57991 5.60416 5.69579 5.74960 5.78143 5.85882 5.86357 6.01978 6.02724 6.08020 6.20325 6.32515 6.34381 6.36041 6.82846 6.86819 7.24407 7.42302 7.71763 7.90956 8.43562 9.54628 10.12566 10.46957 11.47302 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.028205 B = 0.001836 C = 0.001740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.492528 B =15244.205218 C =16086.179707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.734 5.734 10 C 0.150 3.850 11 C -0.114 4.114 12 C -0.094 4.094 13 H 0.086 0.914 14 C -0.131 4.131 15 C 0.087 3.913 16 N -0.612 5.612 17 C 0.569 3.431 18 O -0.530 6.530 19 C -0.120 4.120 20 C -0.052 4.052 21 C -0.101 4.101 22 C 0.142 3.858 23 N -0.478 5.478 24 C 0.138 3.862 25 C -0.181 4.181 26 C -0.048 4.048 27 C -0.113 4.113 28 C -0.094 4.094 29 C 0.110 3.890 30 H 0.255 0.745 31 H 0.383 0.617 32 H 0.018 0.982 33 H 0.020 0.980 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.144 0.856 41 H 0.142 0.858 42 H 0.161 0.839 43 H 0.140 0.860 44 H 0.142 0.858 45 H 0.171 0.829 46 H 0.084 0.916 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.785 -32.994 -0.492 33.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.378 5.378 10 C 0.023 3.977 11 C -0.153 4.153 12 C -0.114 4.114 13 H 0.105 0.895 14 C -0.169 4.169 15 C -0.035 4.035 16 N -0.345 5.345 17 C 0.359 3.641 18 O -0.407 6.407 19 C -0.123 4.123 20 C -0.072 4.072 21 C -0.120 4.120 22 C 0.020 3.980 23 N -0.186 5.186 24 C -0.034 4.034 25 C -0.201 4.201 26 C -0.074 4.074 27 C -0.115 4.115 28 C -0.113 4.113 29 C -0.011 4.011 30 H 0.065 0.935 31 H 0.217 0.783 32 H 0.036 0.964 33 H 0.038 0.962 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.104 0.896 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.162 0.838 41 H 0.160 0.840 42 H 0.178 0.822 43 H 0.158 0.842 44 H 0.160 0.840 45 H 0.188 0.812 46 H 0.102 0.898 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.188 -32.833 -1.342 33.015 hybrid contribution -0.646 1.177 0.427 1.409 sum 2.542 -31.656 -0.914 31.771 Atomic orbital electron populations 1.69655 1.05104 1.25627 1.57957 1.24744 0.95546 0.97717 1.03085 0.86183 0.78649 0.83787 0.77551 1.21700 1.21765 1.20759 1.19250 0.91078 0.84210 1.42475 0.91175 1.42356 1.05850 1.00077 1.89530 1.20686 0.93563 0.85582 0.97886 1.21688 0.98574 0.92387 1.02619 1.22356 0.96846 0.94996 0.97166 0.89537 1.22813 0.98282 0.94274 1.01561 1.22575 0.89349 0.96460 0.95165 1.48406 1.28260 1.08444 1.49388 1.17872 0.80076 0.86888 0.79307 1.90814 1.42453 1.66916 1.40553 1.19948 0.97270 0.93042 1.02067 1.20937 0.96492 0.94191 0.95603 1.20723 0.98800 0.92645 0.99793 1.19070 0.93363 0.89925 0.95627 1.68084 1.28366 1.05121 1.17067 1.23063 0.89042 1.00417 0.90885 1.21918 1.00059 0.95934 1.02145 1.21558 0.97202 0.93871 0.94774 1.18824 0.96759 0.94509 1.01409 1.23047 0.99586 0.92612 0.96012 1.22471 1.01837 0.78914 0.97896 0.93549 0.78333 0.96435 0.96233 0.91523 0.91200 0.89589 0.89915 0.90449 0.90375 0.83844 0.84050 0.82218 0.84214 0.84020 0.81247 0.89752 0.90602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.41 13.06 55.49 0.72 -27.69 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 3 Si 0.91 22.68 29.55 -169.99 -5.02 17.66 16 4 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 7 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.73 -18.66 5.60 -59.91 -0.34 -19.00 16 10 C 0.15 2.95 6.11 -4.04 -0.02 2.93 16 11 C -0.11 -1.66 4.84 -26.73 -0.13 -1.79 16 12 C -0.09 -1.05 3.08 -88.47 -0.27 -1.32 16 13 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 14 C -0.13 -1.03 6.42 -24.89 -0.16 -1.19 16 15 C 0.09 0.65 4.87 -3.06 -0.01 0.64 16 16 N -0.61 -6.99 3.33 -177.57 -0.59 -7.58 16 17 C 0.57 7.54 7.80 -12.36 -0.10 7.44 16 18 O -0.53 -8.99 16.64 5.32 0.09 -8.90 16 19 C -0.12 -1.29 5.87 -104.99 -0.62 -1.91 16 20 C -0.05 -0.53 9.49 -39.59 -0.38 -0.91 16 21 C -0.10 -0.96 9.95 -39.54 -0.39 -1.36 16 22 C 0.14 1.41 6.61 -84.78 -0.56 0.85 16 23 N -0.48 -4.57 10.33 -10.92 -0.11 -4.69 16 24 C 0.14 0.89 11.15 -17.45 -0.19 0.70 16 25 C -0.18 -0.90 10.03 -39.78 -0.40 -1.30 16 26 C -0.05 -0.28 9.89 -39.18 -0.39 -0.67 16 27 C -0.11 -0.96 5.74 -106.82 -0.61 -1.57 16 28 C -0.09 -0.79 8.35 -38.74 -0.32 -1.11 16 29 C 0.11 1.41 5.55 -2.53 -0.01 1.39 16 30 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 31 H 0.38 10.13 7.67 -40.82 -0.31 9.82 16 32 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.02 0.40 7.46 -51.93 -0.39 0.01 16 34 H 0.07 0.98 8.10 -51.93 -0.42 0.56 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.64 8.04 -51.93 -0.42 0.22 16 38 H 0.08 0.45 6.83 -51.93 -0.35 0.10 16 39 H 0.08 0.47 6.64 -51.93 -0.34 0.12 16 40 H 0.14 1.44 7.63 -52.49 -0.40 1.04 16 41 H 0.14 1.13 8.06 -52.48 -0.42 0.70 16 42 H 0.16 0.53 8.06 -52.49 -0.42 0.11 16 43 H 0.14 0.28 8.06 -52.49 -0.42 -0.14 16 44 H 0.14 0.41 8.06 -52.49 -0.42 -0.02 16 45 H 0.17 1.02 2.71 -60.11 -0.16 0.86 16 46 H 0.08 1.22 8.02 -51.93 -0.42 0.80 16 47 H 0.08 1.02 8.00 -51.93 -0.42 0.61 16 LS Contribution 383.08 15.07 5.77 5.77 Total: -1.00 -35.78 383.08 -10.86 -46.64 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -6.56 Total: 4.45 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: -4.82 Total: -6.68 kcal Atomic # 7 Polarization: -58.64 SS G_CDS: -0.31 Total: -58.95 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.09 Total: -8.90 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.78 -10.86 -46.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700075687.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.014 kcal (2) G-P(sol) polarization free energy of solvation -35.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds