Wall clock time and date at job start Tue Mar 31 2020 22:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86804 * 119.99537 * 2 1 4 4 H 1.48497 * 109.47152 * 270.00258 * 3 2 1 5 5 H 1.48504 * 109.46833 * 30.00660 * 3 2 1 6 6 H 1.48503 * 109.46896 * 150.00202 * 3 2 1 7 7 C 1.38812 * 120.00535 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99631 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99652 * 359.97438 * 7 2 1 10 10 C 1.46503 * 119.99242 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46367 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.46818 * 179.97438 * 11 10 9 13 13 H 1.09000 * 110.88361 * 57.43071 * 12 11 10 14 14 C 1.55164 * 111.00443 * 181.35047 * 12 11 10 15 15 C 1.54333 * 103.01906 * 153.38318 * 14 12 11 16 16 N 1.47023 * 107.26652 * 338.14136 * 15 14 12 17 17 C 1.34779 * 125.64594 * 178.85293 * 16 15 14 18 18 O 1.21558 * 119.99640 * 174.34834 * 17 16 15 19 19 C 1.47767 * 119.99956 * 354.61931 * 17 16 15 20 20 C 1.40635 * 119.80332 * 187.92354 * 19 17 16 21 21 C 1.35700 * 120.92110 * 180.02562 * 20 19 17 22 22 C 1.40760 * 120.11375 * 359.97438 * 21 20 19 23 23 N 1.33648 * 120.84061 * 180.02562 * 22 21 20 24 24 C 1.31122 * 121.39549 * 179.97438 * 23 22 21 25 25 C 1.39315 * 121.77124 * 359.97438 * 24 23 22 26 26 C 1.36575 * 119.90115 * 0.02562 * 25 24 23 27 27 C 1.40889 * 118.16194 * 0.02562 * 26 25 24 28 28 C 1.38540 * 119.80633 * 7.64501 * 19 17 16 29 29 C 1.47424 * 108.70270 * 358.58438 * 16 15 14 30 30 H 0.96992 * 120.00594 * 359.97438 * 1 2 3 31 31 H 0.96990 * 120.00041 * 359.97438 * 9 7 2 32 32 H 1.08992 * 109.47500 * 60.00636 * 10 9 7 33 33 H 1.08994 * 109.47232 * 299.99549 * 10 9 7 34 34 H 1.09001 * 109.47191 * 60.00416 * 11 10 9 35 35 H 1.08998 * 109.47469 * 300.00447 * 11 10 9 36 36 H 1.08999 * 110.72007 * 271.94795 * 14 12 11 37 37 H 1.09004 * 110.71663 * 35.03453 * 14 12 11 38 38 H 1.09000 * 109.98836 * 218.66610 * 15 14 12 39 39 H 1.08997 * 109.77667 * 97.50281 * 15 14 12 40 40 H 1.08000 * 119.53521 * 359.97438 * 20 19 17 41 41 H 1.08004 * 119.93942 * 179.97438 * 21 20 19 42 42 H 1.08000 * 119.11400 * 180.02562 * 24 23 22 43 43 H 1.08001 * 120.04459 * 180.02562 * 25 24 23 44 44 H 1.07997 * 120.91829 * 179.97438 * 26 25 24 45 45 H 1.08000 * 120.30030 * 359.97438 * 28 19 17 46 46 H 1.09003 * 110.36567 * 143.19549 * 29 16 15 47 47 H 1.08994 * 110.36826 * 265.51541 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0466 -1.4000 5 1 1.4475 2.6526 0.7002 6 1 3.5477 1.4403 0.7000 7 6 2.0104 -1.2021 -0.0005 8 1 3.0904 -1.2019 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0585 -3.6567 -0.0017 11 6 1.0642 -4.8196 -0.0008 12 6 1.8294 -6.1446 -0.0026 13 1 2.4997 -6.2074 0.8546 14 6 0.8534 -7.3504 -0.0359 15 6 1.6922 -8.4582 -0.7075 16 7 2.7612 -7.7953 -1.4687 17 6 3.7211 -8.4185 -2.1805 18 8 4.4953 -7.7689 -2.8559 19 6 3.8286 -9.8918 -2.1445 20 6 4.9272 -10.5275 -2.7502 21 6 5.0483 -11.8790 -2.7311 22 6 4.0681 -12.6670 -2.0992 23 7 4.1731 -13.9991 -2.0713 24 6 3.2667 -14.7436 -1.4853 25 6 2.1512 -14.1876 -0.8630 26 6 1.9813 -12.8325 -0.8541 27 6 2.9567 -12.0359 -1.4857 28 6 2.8496 -10.6384 -1.5093 29 6 2.6054 -6.3359 -1.3296 30 1 -0.4850 0.8399 0.0004 31 1 0.3558 -2.3881 0.0002 32 1 2.6857 -3.7148 0.8878 33 1 2.6843 -3.7139 -0.8921 34 1 0.4366 -4.7618 -0.8901 35 1 0.4385 -4.7621 0.8899 36 1 0.5646 -7.6408 0.9742 37 1 -0.0269 -7.1176 -0.6351 38 1 1.0658 -9.0434 -1.3808 39 1 2.1262 -9.1054 0.0546 40 1 5.6845 -9.9318 -3.2380 41 1 5.8984 -12.3506 -3.2017 42 1 3.3887 -15.8167 -1.4844 43 1 1.4219 -14.8273 -0.3883 44 1 1.1225 -12.3841 -0.3769 45 1 2.0091 -10.1484 -1.0404 46 1 3.5813 -5.8541 -1.2711 47 1 2.0325 -5.9342 -2.1653 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700075687.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:14 Heat of formation + Delta-G solvation = 30.163474 kcal Electronic energy + Delta-G solvation = -27810.466769 eV Core-core repulsion = 23958.006984 eV Total energy + Delta-G solvation = -3852.459785 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.12228 -41.08344 -39.07283 -37.72683 -36.90949 -34.91642 -34.32853 -32.84563 -31.66680 -31.33250 -30.74503 -28.48985 -26.58639 -25.56614 -24.81168 -24.33396 -23.29952 -22.56110 -21.41903 -21.07708 -19.45503 -19.13846 -18.41398 -17.91835 -17.29509 -17.14567 -16.66528 -16.48442 -15.96571 -15.62096 -15.41862 -15.30313 -15.16325 -15.05591 -14.95424 -14.57621 -14.29071 -14.10533 -13.94286 -13.83863 -13.46435 -13.20104 -12.99321 -12.83327 -12.74488 -12.71007 -12.47020 -12.26524 -12.11761 -11.93541 -11.67771 -11.61166 -11.52840 -11.35723 -11.16929 -10.93732 -10.43504 -9.96304 -9.71115 -9.37165 -9.01005 -7.97230 -5.25813 -0.82456 -0.34725 0.87267 1.34392 1.45801 1.47645 1.56037 1.78984 2.20978 2.54545 3.06919 3.17892 3.33857 3.36240 3.43239 3.57254 3.67657 3.74959 3.80465 3.99161 4.01558 4.06100 4.15516 4.21187 4.31177 4.33323 4.44050 4.49478 4.53089 4.57544 4.71273 4.75568 4.80563 4.83267 4.89743 4.94105 4.94403 5.01636 5.10615 5.15468 5.23499 5.24464 5.29967 5.38967 5.46497 5.47738 5.49216 5.76770 6.26154 6.35789 6.90232 6.95136 7.32210 8.08748 8.32230 9.26102 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.028205 B = 0.001836 C = 0.001740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.492528 B =15244.205218 C =16086.179707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.074 4.074 3 Si 0.973 3.027 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.271 1.271 7 C -0.250 4.250 8 H 0.071 0.929 9 N -0.747 5.747 10 C 0.146 3.854 11 C -0.099 4.099 12 C -0.085 4.085 13 H 0.091 0.909 14 C -0.119 4.119 15 C 0.078 3.922 16 N -0.610 5.610 17 C 0.564 3.436 18 O -0.586 6.586 19 C -0.147 4.147 20 C -0.065 4.065 21 C -0.110 4.110 22 C 0.122 3.878 23 N -0.517 5.517 24 C 0.138 3.862 25 C -0.174 4.174 26 C -0.045 4.045 27 C -0.129 4.129 28 C -0.070 4.070 29 C 0.108 3.892 30 H 0.252 0.748 31 H 0.376 0.624 32 H 0.018 0.982 33 H 0.011 0.989 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.116 0.884 37 H 0.088 0.912 38 H 0.105 0.895 39 H 0.105 0.895 40 H 0.130 0.870 41 H 0.145 0.855 42 H 0.189 0.811 43 H 0.179 0.821 44 H 0.180 0.820 45 H 0.199 0.801 46 H 0.055 0.945 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.269 -35.906 1.449 35.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.267 4.267 3 Si 0.801 3.199 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.196 1.196 7 C -0.382 4.382 8 H 0.089 0.911 9 N -0.390 5.390 10 C 0.020 3.980 11 C -0.138 4.138 12 C -0.105 4.105 13 H 0.109 0.891 14 C -0.157 4.157 15 C -0.042 4.042 16 N -0.342 5.342 17 C 0.355 3.645 18 O -0.467 6.467 19 C -0.150 4.150 20 C -0.085 4.085 21 C -0.128 4.128 22 C 0.001 3.999 23 N -0.225 5.225 24 C -0.034 4.034 25 C -0.193 4.193 26 C -0.070 4.070 27 C -0.131 4.131 28 C -0.088 4.088 29 C -0.015 4.015 30 H 0.061 0.939 31 H 0.208 0.792 32 H 0.036 0.964 33 H 0.029 0.971 34 H 0.082 0.918 35 H 0.096 0.904 36 H 0.134 0.866 37 H 0.107 0.893 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.148 0.852 41 H 0.163 0.837 42 H 0.205 0.795 43 H 0.196 0.804 44 H 0.198 0.802 45 H 0.215 0.785 46 H 0.074 0.926 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.131 -35.794 0.625 35.818 hybrid contribution -0.027 1.884 -0.149 1.890 sum 1.104 -33.910 0.476 33.932 Atomic orbital electron populations 1.69797 1.06449 1.26147 1.59357 1.25558 0.96483 1.01037 1.03585 0.85157 0.77730 0.79541 0.77436 1.21507 1.21719 1.19630 1.19629 0.91415 0.85660 1.41472 0.91125 1.42577 1.05713 1.01262 1.89417 1.20882 0.94535 0.85390 0.97189 1.21524 0.97477 0.91926 1.02826 1.22219 0.97394 0.94798 0.96068 0.89059 1.22826 0.97300 0.92038 1.03537 1.22950 0.88563 0.96773 0.95943 1.48463 1.28691 1.07974 1.49049 1.18331 0.79628 0.87895 0.78655 1.90770 1.44671 1.68194 1.43113 1.19777 0.98905 0.91513 1.04781 1.20868 0.96740 0.94513 0.96402 1.20780 0.99422 0.92348 1.00272 1.19270 0.94002 0.90518 0.96078 1.68095 1.30256 1.05112 1.19087 1.23741 0.88693 1.01690 0.89237 1.22359 0.99835 0.96231 1.00886 1.22029 0.97245 0.94074 0.93671 1.19068 0.97271 0.94743 1.02024 1.23297 0.98914 0.92554 0.93987 1.22349 1.00427 0.80066 0.98618 0.93888 0.79241 0.96443 0.97083 0.91776 0.90419 0.86574 0.89326 0.87741 0.87764 0.85163 0.83724 0.79456 0.80392 0.80222 0.78524 0.92603 0.91864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.49 13.06 21.65 0.28 -59.21 16 2 C -0.07 -4.34 5.50 84.86 0.47 -3.88 16 3 Si 0.97 47.00 29.55 68.60 2.03 49.02 16 4 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 5 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 6 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 7 C -0.25 -14.38 9.99 84.03 0.84 -13.54 16 8 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 9 N -0.75 -38.56 5.60 -343.45 -1.92 -40.49 16 10 C 0.15 5.82 6.11 86.38 0.53 6.35 16 11 C -0.10 -2.80 4.84 30.60 0.15 -2.65 16 12 C -0.09 -1.77 3.08 -9.40 -0.03 -1.80 16 13 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 14 C -0.12 -1.40 6.42 31.79 0.20 -1.20 16 15 C 0.08 0.88 4.87 86.73 0.42 1.30 16 16 N -0.61 -13.59 3.33 -833.99 -2.77 -16.36 16 17 C 0.56 15.56 7.80 86.76 0.68 16.24 16 18 O -0.59 -21.68 16.64 -3.90 -0.06 -21.75 16 19 C -0.15 -3.21 5.87 -20.10 -0.12 -3.32 16 20 C -0.06 -1.46 9.49 22.27 0.21 -1.24 16 21 C -0.11 -2.23 9.95 22.30 0.22 -2.01 16 22 C 0.12 2.36 6.61 40.36 0.27 2.62 16 23 N -0.52 -9.26 10.33 -188.45 -1.95 -11.21 16 24 C 0.14 1.35 11.15 85.06 0.95 2.30 16 25 C -0.17 -0.90 10.03 22.14 0.22 -0.68 16 26 C -0.04 -0.31 9.89 22.53 0.22 -0.08 16 27 C -0.13 -1.86 5.74 -21.29 -0.12 -1.98 16 28 C -0.07 -1.00 8.35 22.81 0.19 -0.81 16 29 C 0.11 2.81 5.55 86.85 0.48 3.29 16 30 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 31 H 0.38 20.20 7.67 -92.72 -0.71 19.49 16 32 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.01 0.47 7.46 -2.39 -0.02 0.45 16 34 H 0.06 1.85 8.10 -2.39 -0.02 1.83 16 35 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.09 1.01 8.04 -2.38 -0.02 0.99 16 38 H 0.10 0.70 6.83 -2.39 -0.02 0.69 16 39 H 0.10 0.71 6.64 -2.39 -0.02 0.70 16 40 H 0.13 3.10 7.63 -2.91 -0.02 3.07 16 41 H 0.15 2.59 8.06 -2.91 -0.02 2.57 16 42 H 0.19 0.57 8.06 -2.91 -0.02 0.55 16 43 H 0.18 -0.42 8.06 -2.91 -0.02 -0.45 16 44 H 0.18 -0.19 8.06 -2.91 -0.02 -0.21 16 45 H 0.20 1.49 2.71 -10.08 -0.03 1.46 16 46 H 0.06 1.74 8.02 -2.39 -0.02 1.72 16 47 H 0.06 1.78 8.00 -2.39 -0.02 1.76 16 Total: -1.00 -82.63 383.08 1.65 -80.98 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: 0.27 Total: 20.08 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: 5.78 Total: -1.08 kcal Atomic # 7 Polarization: -120.90 SS G_CDS: -6.36 Total: -127.26 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -0.06 Total: -21.75 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.02 kcal Total: -82.63 1.65 -80.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700075687.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.143 kcal (2) G-P(sol) polarization free energy of solvation -82.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds