Wall clock time and date at job start Tue Mar 31 2020 22:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 119.99856 * 2 1 4 4 H 1.48502 * 109.47292 * 269.99608 * 3 2 1 5 5 H 1.48504 * 109.47147 * 29.99882 * 3 2 1 6 6 H 1.48502 * 109.47171 * 149.99486 * 3 2 1 7 7 C 1.38808 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99894 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00479 * 0.02562 * 7 2 1 10 10 C 1.47028 * 125.64456 * 0.04281 * 9 7 2 11 11 C 1.54372 * 107.28756 * 181.05791 * 10 9 7 12 12 C 1.55153 * 102.92169 * 22.13410 * 11 10 9 13 13 H 1.09005 * 111.00396 * 82.64098 * 12 11 10 14 14 C 1.52997 * 111.00636 * 206.45515 * 12 11 10 15 15 C 1.53000 * 109.47060 * 181.82451 * 14 12 11 16 16 N 1.46499 * 109.46840 * 180.02562 * 15 14 12 17 17 C 1.34779 * 119.99872 * 179.97438 * 16 15 14 18 18 O 1.21540 * 120.00018 * 359.97438 * 17 16 15 19 19 C 1.47894 * 119.99998 * 180.02562 * 17 16 15 20 20 C 1.40596 * 119.72579 * 359.72127 * 19 17 16 21 21 C 1.35855 * 120.94745 * 179.75215 * 20 19 17 22 22 C 1.40487 * 119.87779 * 0.52388 * 21 20 19 23 23 C 1.40486 * 121.83635 * 179.72236 * 22 21 20 24 24 N 1.31214 * 119.94355 * 180.02562 * 23 22 21 25 25 C 1.32558 * 122.79829 * 359.97438 * 24 23 22 26 26 C 1.36216 * 121.85051 * 359.97438 * 25 24 23 27 27 C 1.40754 * 118.67687 * 0.02562 * 26 25 24 28 28 C 1.38522 * 119.72915 * 180.02562 * 19 17 16 29 29 C 1.47420 * 125.65341 * 180.02562 * 9 7 2 30 30 H 0.97000 * 120.00144 * 0.02562 * 1 2 3 31 31 H 1.09006 * 109.88174 * 300.44072 * 10 9 7 32 32 H 1.08997 * 109.87962 * 61.44938 * 10 9 7 33 33 H 1.09001 * 110.70165 * 263.79237 * 11 10 9 34 34 H 1.08994 * 110.75467 * 140.50515 * 11 10 9 35 35 H 1.09002 * 109.47153 * 61.82132 * 14 12 11 36 36 H 1.09001 * 109.46832 * 301.82323 * 14 12 11 37 37 H 1.09001 * 109.47194 * 299.99650 * 15 14 12 38 38 H 1.08992 * 109.47399 * 59.99823 * 15 14 12 39 39 H 0.97005 * 120.00448 * 359.97438 * 16 15 14 40 40 H 1.07997 * 119.53059 * 0.02562 * 20 19 17 41 41 H 1.07994 * 120.05792 * 180.23485 * 21 20 19 42 42 H 1.08002 * 120.02785 * 0.04054 * 23 22 21 43 43 H 1.08000 * 119.07416 * 180.02562 * 25 24 23 44 44 H 1.08000 * 120.66228 * 179.97438 * 26 25 24 45 45 H 1.08010 * 120.36377 * 359.97438 * 28 19 17 46 46 H 1.08998 * 110.36866 * 37.06650 * 29 9 7 47 47 H 1.09004 * 110.45726 * 274.79691 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1375 -2.5328 -0.0009 11 6 -0.4490 -4.0445 0.0269 12 6 0.8514 -4.6560 0.6121 13 1 0.8558 -4.5964 1.7005 14 6 1.0369 -6.1008 0.1442 15 6 2.3026 -6.6831 0.7766 16 7 2.4806 -8.0663 0.3281 17 6 3.5367 -8.7840 0.7595 18 8 4.3417 -8.2835 1.5202 19 6 3.7167 -10.1803 0.3063 20 6 2.7794 -10.7551 -0.5700 21 6 2.9231 -12.0338 -1.0059 22 6 4.0154 -12.8028 -0.5709 23 6 4.2010 -14.1305 -0.9909 24 7 5.2345 -14.8151 -0.5609 25 6 6.1360 -14.3092 0.2689 26 6 6.0480 -13.0319 0.7340 27 6 4.9659 -12.2343 0.3170 28 6 4.8039 -10.9129 0.7535 29 6 1.9335 -3.7311 0.0016 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5584 -2.0519 0.8822 32 1 -0.5536 -2.0823 -0.9020 33 1 -0.6318 -4.4189 -0.9804 34 1 -1.2991 -4.2519 0.6768 35 1 1.1305 -6.1219 -0.9416 36 1 0.1739 -6.6941 0.4461 37 1 3.1657 -6.0898 0.4747 38 1 2.2090 -6.6620 1.8623 39 1 1.8383 -8.4658 -0.2793 40 1 1.9354 -10.1704 -0.9048 41 1 2.1966 -12.4597 -1.6818 42 1 3.4937 -14.5873 -1.6673 43 1 6.9639 -14.9268 0.5843 44 1 6.7933 -12.6393 1.4099 45 1 5.5197 -10.4699 1.4302 46 1 2.8323 -3.7403 0.6182 47 1 2.1692 -4.0435 -1.0158 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713737437.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:20 Heat of formation + Delta-G solvation = 36.305394 kcal Electronic energy + Delta-G solvation = -27277.278599 eV Core-core repulsion = 23425.085148 eV Total energy + Delta-G solvation = -3852.193451 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.37058 -39.92562 -37.90699 -37.35143 -35.39073 -33.52924 -33.10904 -31.96340 -30.68481 -30.11836 -28.99680 -26.88314 -25.38747 -24.40272 -24.27292 -22.83244 -22.25162 -21.26195 -20.00131 -19.63015 -18.60084 -18.13923 -17.16267 -16.82500 -16.55941 -15.81656 -15.78214 -15.43159 -15.04451 -14.67522 -14.56495 -14.31484 -14.17651 -14.07266 -13.82279 -13.64302 -13.33467 -12.85638 -12.55383 -12.45442 -12.23201 -11.98745 -11.83369 -11.60345 -11.56400 -11.12545 -10.86968 -10.76033 -10.74874 -10.34764 -10.13810 -10.01233 -9.96637 -9.85089 -9.76389 -9.62882 -9.61045 -9.20136 -8.60362 -8.57556 -6.79815 -5.68725 -3.01796 -0.26565 0.19274 1.35818 2.10859 2.87951 3.02273 3.41683 3.46742 3.48688 3.60718 3.90827 4.00486 4.16235 4.24683 4.36083 4.49325 4.52340 4.63874 4.71140 4.88653 5.06151 5.09368 5.17425 5.20631 5.25512 5.41688 5.49031 5.51671 5.59056 5.64105 5.72282 5.73721 5.79591 5.86272 5.99645 6.07154 6.10124 6.18346 6.20314 6.30315 6.38551 6.55332 6.59630 6.73743 6.97461 7.24952 7.46472 7.59213 7.65469 7.85399 7.94935 8.29303 9.25344 9.85846 10.52114 11.43072 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.028827 B = 0.001651 C = 0.001594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.073340 B =16952.339093 C =17557.029968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.010 4.010 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.227 4.227 8 H 0.077 0.923 9 N -0.607 5.607 10 C 0.176 3.824 11 C -0.138 4.138 12 C -0.100 4.100 13 H 0.076 0.924 14 C -0.116 4.116 15 C 0.117 3.883 16 N -0.721 5.721 17 C 0.552 3.448 18 O -0.532 6.532 19 C -0.111 4.111 20 C -0.095 4.095 21 C -0.089 4.089 22 C -0.099 4.099 23 C 0.143 3.857 24 N -0.484 5.484 25 C 0.073 3.927 26 C -0.144 4.144 27 C -0.034 4.034 28 C -0.043 4.043 29 C 0.140 3.860 30 H 0.251 0.749 31 H 0.045 0.955 32 H 0.041 0.959 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.399 0.601 40 H 0.132 0.868 41 H 0.141 0.859 42 H 0.166 0.834 43 H 0.156 0.844 44 H 0.142 0.858 45 H 0.148 0.852 46 H 0.037 0.963 47 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.512 -30.009 -1.502 30.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.206 4.206 3 Si 0.742 3.258 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.355 4.355 8 H 0.095 0.905 9 N -0.333 5.333 10 C 0.052 3.948 11 C -0.176 4.176 12 C -0.121 4.121 13 H 0.094 0.906 14 C -0.155 4.155 15 C -0.006 4.006 16 N -0.373 5.373 17 C 0.338 3.662 18 O -0.409 6.409 19 C -0.115 4.115 20 C -0.113 4.113 21 C -0.109 4.109 22 C -0.101 4.101 23 C -0.028 4.028 24 N -0.192 5.192 25 C -0.070 4.070 26 C -0.163 4.163 27 C -0.039 4.039 28 C -0.062 4.062 29 C 0.013 3.987 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.234 0.766 40 H 0.150 0.850 41 H 0.158 0.842 42 H 0.183 0.817 43 H 0.173 0.827 44 H 0.160 0.840 45 H 0.165 0.835 46 H 0.055 0.945 47 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 5.283 -30.238 -1.126 30.717 hybrid contribution -0.033 1.666 -0.043 1.667 sum 5.250 -28.572 -1.169 29.073 Atomic orbital electron populations 1.69970 1.04866 1.24933 1.57325 1.24801 0.95734 0.97661 1.02407 0.86121 0.78606 0.83526 0.77540 1.21653 1.21687 1.20694 1.19078 0.90458 0.82503 1.43488 0.90483 1.44484 1.01740 0.99944 1.87124 1.21149 0.84363 0.88358 1.00974 1.22904 0.95906 0.99505 0.99331 1.22267 0.97710 0.91853 1.00224 0.90556 1.21753 0.96037 0.96832 1.00845 1.21567 0.99296 0.80033 0.99718 1.46008 1.26883 1.14840 1.49534 1.18229 0.81541 0.85407 0.80986 1.90807 1.43303 1.71548 1.35270 1.20077 0.96996 0.94504 0.99947 1.20993 0.98372 0.95668 0.96293 1.20894 0.96754 0.93842 0.99416 1.19173 0.96247 0.96206 0.98454 1.23279 0.94301 0.89414 0.95847 1.67404 1.02742 1.38417 1.10600 1.22228 0.97324 0.93544 0.93915 1.22026 0.98010 0.95299 1.00981 1.18154 0.95000 0.94231 0.96543 1.21467 0.96313 0.91676 0.96743 1.21603 0.94316 0.86142 0.96597 0.93831 0.93712 0.94064 0.92578 0.92326 0.91230 0.91594 0.90633 0.91132 0.76567 0.84986 0.84162 0.81685 0.82717 0.83979 0.83466 0.94471 0.96552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.40 10.31 55.49 0.57 -26.83 16 2 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 3 Si 0.91 22.41 29.55 -169.99 -5.02 17.38 16 4 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.23 -6.43 10.28 -15.06 -0.15 -6.59 16 8 H 0.08 2.12 7.83 -52.49 -0.41 1.70 16 9 N -0.61 -15.64 3.39 -170.05 -0.58 -16.22 16 10 C 0.18 4.28 5.38 -3.04 -0.02 4.26 16 11 C -0.14 -2.46 6.42 -24.87 -0.16 -2.62 16 12 C -0.10 -1.64 3.03 -88.49 -0.27 -1.91 16 13 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 14 C -0.12 -1.37 4.84 -26.73 -0.13 -1.50 16 15 C 0.12 1.40 5.55 -4.04 -0.02 1.38 16 16 N -0.72 -7.20 5.50 -61.24 -0.34 -7.53 16 17 C 0.55 6.54 7.77 -12.31 -0.10 6.45 16 18 O -0.53 -8.39 16.30 5.33 0.09 -8.31 16 19 C -0.11 -1.03 5.87 -104.95 -0.62 -1.65 16 20 C -0.09 -0.62 9.44 -39.55 -0.37 -1.00 16 21 C -0.09 -0.51 9.77 -39.59 -0.39 -0.90 16 22 C -0.10 -0.73 5.75 -106.78 -0.61 -1.35 16 23 C 0.14 0.98 11.04 -16.97 -0.19 0.79 16 24 N -0.48 -4.10 10.29 -13.15 -0.14 -4.23 16 25 C 0.07 0.52 11.07 -17.97 -0.20 0.32 16 26 C -0.14 -1.01 9.88 -39.36 -0.39 -1.40 16 27 C -0.03 -0.29 5.74 -106.83 -0.61 -0.90 16 28 C -0.04 -0.40 9.38 -38.78 -0.36 -0.76 16 29 C 0.14 2.85 6.03 -2.54 -0.02 2.83 16 30 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 31 H 0.04 1.20 7.38 -51.93 -0.38 0.82 16 32 H 0.04 1.11 7.50 -51.93 -0.39 0.72 16 33 H 0.06 0.92 8.04 -51.93 -0.42 0.51 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.07 0.79 8.03 -51.93 -0.42 0.37 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.08 1.05 7.60 -51.93 -0.39 0.66 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.40 2.72 6.45 -40.82 -0.26 2.46 16 40 H 0.13 0.53 6.34 -52.49 -0.33 0.20 16 41 H 0.14 0.37 8.06 -52.49 -0.42 -0.05 16 42 H 0.17 0.61 8.06 -52.49 -0.42 0.18 16 43 H 0.16 0.72 8.06 -52.49 -0.42 0.30 16 44 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 45 H 0.15 1.35 7.62 -52.48 -0.40 0.95 16 46 H 0.04 0.76 8.10 -51.93 -0.42 0.34 16 47 H 0.02 0.34 7.95 -51.93 -0.41 -0.08 16 LS Contribution 385.36 15.07 5.81 5.81 Total: -1.00 -35.25 385.36 -11.07 -46.31 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -6.76 Total: -1.47 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: -4.70 Total: -4.91 kcal Atomic # 7 Polarization: -54.34 SS G_CDS: -0.48 Total: -54.82 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: 0.09 Total: -8.31 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.25 -11.07 -46.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713737437.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.620 kcal (2) G-P(sol) polarization free energy of solvation -35.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds