Wall clock time and date at job start Tue Mar 31 2020 22:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 120.00501 * 2 1 4 4 H 1.48496 * 109.47351 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46606 * 299.99788 * 3 2 1 6 6 H 1.48499 * 109.47154 * 59.99255 * 3 2 1 7 7 C 1.38820 * 119.99971 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00440 * 179.97438 * 7 2 1 9 9 N 1.36943 * 119.99678 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99920 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47153 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.49620 * 305.06448 * 11 10 9 13 13 C 1.53035 * 109.49556 * 185.00064 * 11 10 9 14 14 C 1.53042 * 109.53628 * 178.64848 * 13 11 10 15 15 C 1.53197 * 109.31288 * 61.36447 * 14 13 11 16 16 N 1.46922 * 108.88995 * 305.29528 * 15 14 13 17 17 C 1.34784 * 120.62929 * 233.67860 * 16 15 14 18 18 O 1.21562 * 120.00242 * 174.94858 * 17 16 15 19 19 C 1.47764 * 119.99797 * 354.94691 * 17 16 15 20 20 C 1.40631 * 119.80985 * 322.70978 * 19 17 16 21 21 C 1.35704 * 120.92448 * 179.77021 * 20 19 17 22 22 C 1.40754 * 120.10959 * 0.47676 * 21 20 19 23 23 N 1.33649 * 120.82780 * 179.78085 * 22 21 20 24 24 C 1.31126 * 121.39199 * 180.02562 * 23 22 21 25 25 C 1.39313 * 121.76796 * 359.97438 * 24 23 22 26 26 C 1.36578 * 119.90782 * 0.02562 * 25 24 23 27 27 C 1.40890 * 118.15619 * 359.97438 * 26 25 24 28 28 C 1.38555 * 119.80324 * 142.98060 * 19 17 16 29 29 C 1.47203 * 118.55961 * 53.54093 * 16 15 14 30 30 H 0.97001 * 119.99437 * 0.02562 * 1 2 3 31 31 H 0.96997 * 120.00038 * 0.02562 * 9 7 2 32 32 H 1.08998 * 109.46806 * 59.99891 * 10 9 7 33 33 H 1.09005 * 109.46687 * 300.00166 * 10 9 7 34 34 H 1.08999 * 109.46165 * 58.63208 * 13 11 10 35 35 H 1.09000 * 109.44575 * 298.66042 * 13 11 10 36 36 H 1.08998 * 109.50222 * 301.41325 * 14 13 11 37 37 H 1.08998 * 109.52827 * 181.33193 * 14 13 11 38 38 H 1.09000 * 109.58466 * 65.15278 * 15 14 13 39 39 H 1.09003 * 109.58852 * 185.43380 * 15 14 13 40 40 H 1.08002 * 119.53602 * 359.97438 * 20 19 17 41 41 H 1.07994 * 119.94099 * 180.25583 * 21 20 19 42 42 H 1.08004 * 119.11496 * 179.97438 * 24 23 22 43 43 H 1.08008 * 120.04494 * 180.02562 * 25 24 23 44 44 H 1.08004 * 120.92277 * 179.97438 * 26 25 24 45 45 H 1.08002 * 120.29705 * 359.95325 * 28 19 17 46 46 H 1.09002 * 109.53277 * 186.67381 * 29 16 15 47 47 H 1.09001 * 109.67747 * 66.36577 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8916 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6569 0.0005 11 6 1.0637 -4.8198 -0.0001 12 1 0.3783 -4.7128 0.8407 13 6 1.8240 -6.1419 0.1256 14 6 0.8283 -7.3037 0.1590 15 6 0.0322 -7.3263 -1.1496 16 7 -0.5876 -6.0097 -1.3522 17 6 -1.9135 -5.9009 -1.5685 18 8 -2.4291 -4.8025 -1.6431 19 6 -2.7405 -7.1167 -1.7150 20 6 -2.2231 -8.2370 -2.3895 21 6 -2.9610 -9.3668 -2.5331 22 6 -4.2675 -9.4277 -2.0130 23 7 -5.0084 -10.5315 -2.1500 24 6 -6.2269 -10.6001 -1.6703 25 6 -6.8105 -9.5306 -0.9949 26 6 -6.1093 -8.3718 -0.8192 27 6 -4.8004 -8.3019 -1.3360 28 6 -4.0232 -7.1442 -1.1919 29 6 0.2702 -4.8142 -1.3105 30 1 -0.4849 0.8401 -0.0004 31 1 0.3555 -2.3881 -0.0002 32 1 2.6846 -3.7146 0.8905 33 1 2.6846 -3.7146 -0.8895 34 1 2.4089 -6.1385 1.0454 35 1 2.4909 -6.2596 -0.7284 36 1 0.1452 -7.1735 0.9982 37 1 1.3687 -8.2435 0.2723 38 1 0.7018 -7.5468 -1.9810 39 1 -0.7432 -8.0904 -1.0925 40 1 -1.2232 -8.1988 -2.7960 41 1 -2.5463 -10.2193 -3.0504 42 1 -6.7931 -11.5103 -1.8024 43 1 -7.8163 -9.6176 -0.6107 44 1 -6.5459 -7.5323 -0.2985 45 1 -4.4204 -6.2818 -0.6774 46 1 -0.3498 -3.9190 -1.3585 47 1 0.9592 -4.8272 -2.1550 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714079481.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:57 Heat of formation + Delta-G solvation = 37.087015 kcal Electronic energy + Delta-G solvation = -28624.419670 eV Core-core repulsion = 24772.260112 eV Total energy + Delta-G solvation = -3852.159558 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.30015 -40.12156 -37.79918 -36.91566 -34.94064 -33.86620 -32.97102 -31.71577 -31.07560 -30.41523 -29.62940 -26.20056 -25.60086 -24.46665 -23.95426 -23.12781 -22.42974 -21.48002 -20.52819 -19.46842 -18.67536 -17.58586 -17.17155 -16.98671 -16.16192 -15.79737 -15.24974 -15.08073 -14.75186 -14.67802 -14.49617 -14.36056 -14.04862 -13.84381 -13.51951 -13.45069 -13.40571 -13.03837 -12.84634 -12.61991 -12.48267 -12.25730 -11.99904 -11.81545 -11.34821 -11.09566 -11.02385 -10.90646 -10.82285 -10.64184 -10.37809 -10.29526 -9.97656 -9.89498 -9.76589 -9.59261 -9.07781 -8.84549 -8.65970 -8.48524 -6.87182 -5.70094 -2.99862 -0.06135 0.33919 1.59649 2.22506 2.88891 3.11861 3.46843 3.51750 3.54597 3.75351 3.89186 4.22190 4.28758 4.33718 4.52466 4.60395 4.66838 4.71395 4.77020 4.85725 4.91161 4.99564 5.10800 5.19310 5.31429 5.38932 5.43154 5.52932 5.59848 5.63334 5.64960 5.66677 5.79856 5.83173 5.87774 5.93895 6.01263 6.10295 6.12686 6.13618 6.21002 6.39540 6.39811 6.54217 6.63166 6.77948 6.88924 7.44478 7.51581 7.74964 8.20004 8.47639 9.58698 10.16685 10.50857 11.52263 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018517 B = 0.002379 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.728734 B =11766.511632 C =12847.433702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.733 5.733 10 C 0.161 3.839 11 C -0.107 4.107 12 H 0.074 0.926 13 C -0.113 4.113 14 C -0.134 4.134 15 C 0.093 3.907 16 N -0.604 5.604 17 C 0.553 3.447 18 O -0.521 6.521 19 C -0.122 4.122 20 C -0.078 4.078 21 C -0.100 4.100 22 C 0.140 3.860 23 N -0.478 5.478 24 C 0.137 3.863 25 C -0.181 4.181 26 C -0.046 4.046 27 C -0.111 4.111 28 C -0.033 4.033 29 C 0.121 3.879 30 H 0.255 0.745 31 H 0.385 0.615 32 H 0.022 0.978 33 H 0.020 0.980 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.092 0.908 40 H 0.141 0.859 41 H 0.141 0.859 42 H 0.160 0.840 43 H 0.139 0.861 44 H 0.143 0.857 45 H 0.143 0.857 46 H 0.104 0.896 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.127 -26.316 -2.558 27.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.372 4.372 8 H 0.088 0.912 9 N -0.378 5.378 10 C 0.033 3.967 11 C -0.126 4.126 12 H 0.092 0.908 13 C -0.151 4.151 14 C -0.172 4.172 15 C -0.029 4.029 16 N -0.337 5.337 17 C 0.341 3.659 18 O -0.397 6.397 19 C -0.125 4.125 20 C -0.098 4.098 21 C -0.119 4.119 22 C 0.018 3.982 23 N -0.186 5.186 24 C -0.035 4.035 25 C -0.201 4.201 26 C -0.072 4.072 27 C -0.113 4.113 28 C -0.053 4.053 29 C -0.001 4.001 30 H 0.065 0.935 31 H 0.219 0.781 32 H 0.040 0.960 33 H 0.038 0.962 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.110 0.890 40 H 0.159 0.841 41 H 0.159 0.841 42 H 0.177 0.823 43 H 0.157 0.843 44 H 0.161 0.839 45 H 0.161 0.839 46 H 0.123 0.877 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.784 -26.255 -3.075 27.855 hybrid contribution -0.224 1.625 0.505 1.717 sum -9.008 -24.629 -2.570 26.351 Atomic orbital electron populations 1.69690 1.05056 1.25506 1.57507 1.24769 0.95506 0.97694 1.03041 0.86134 0.78728 0.84257 0.77161 1.20598 1.21880 1.21923 1.19251 0.90996 0.84162 1.42816 0.91166 1.42430 1.05963 0.99956 1.89466 1.20634 0.92949 0.85150 0.98016 1.21683 0.97984 0.95168 0.97815 0.90762 1.21530 0.97463 0.93718 1.02358 1.21923 0.98607 0.99198 0.97470 1.22191 0.97639 0.85026 0.98079 1.48128 1.06758 1.08297 1.70506 1.18260 0.81819 0.88545 0.77319 1.90877 1.71724 1.27349 1.49755 1.19990 0.95386 0.94871 1.02221 1.21156 1.00175 0.91593 0.96864 1.20671 0.91970 0.98885 1.00357 1.18989 0.94600 0.89043 0.95530 1.68072 1.06660 1.25082 1.18832 1.23032 0.90919 0.98174 0.91398 1.21908 1.01924 0.94496 1.01800 1.21602 0.92309 0.98240 0.95003 1.18796 0.95673 0.95391 1.01397 1.21416 0.91755 0.96495 0.95635 1.21819 0.93203 0.87723 0.97322 0.93541 0.78079 0.96033 0.96240 0.91476 0.91706 0.91515 0.90800 0.91106 0.89050 0.84116 0.84112 0.82266 0.84270 0.83941 0.83927 0.87747 0.91344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.10 13.06 55.49 0.72 -28.38 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.91 29.55 -169.99 -5.02 17.88 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 6 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 7 C -0.24 -6.89 9.99 -15.05 -0.15 -7.04 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.73 -18.99 5.38 -59.90 -0.32 -19.31 16 10 C 0.16 3.22 5.65 -4.04 -0.02 3.20 16 11 C -0.11 -1.73 2.37 -90.50 -0.21 -1.95 16 12 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 13 C -0.11 -1.35 5.17 -26.69 -0.14 -1.49 16 14 C -0.13 -1.32 6.08 -26.61 -0.16 -1.48 16 15 C 0.09 0.92 4.79 -3.71 -0.02 0.90 16 16 N -0.60 -8.46 2.98 -173.68 -0.52 -8.98 16 17 C 0.55 8.67 7.35 -12.36 -0.09 8.58 16 18 O -0.52 -10.59 16.27 5.31 0.09 -10.51 16 19 C -0.12 -1.50 5.24 -104.98 -0.55 -2.05 16 20 C -0.08 -0.75 7.23 -39.59 -0.29 -1.04 16 21 C -0.10 -0.95 9.95 -39.54 -0.39 -1.34 16 22 C 0.14 1.51 6.61 -84.78 -0.56 0.95 16 23 N -0.48 -4.92 10.33 -10.92 -0.11 -5.04 16 24 C 0.14 1.03 11.15 -17.45 -0.19 0.83 16 25 C -0.18 -1.19 10.03 -39.78 -0.40 -1.59 16 26 C -0.05 -0.37 9.89 -39.18 -0.39 -0.76 16 27 C -0.11 -1.16 5.74 -106.82 -0.61 -1.77 16 28 C -0.03 -0.39 9.36 -38.73 -0.36 -0.75 16 29 C 0.12 2.01 5.54 -3.56 -0.02 1.99 16 30 H 0.25 7.70 8.31 -40.82 -0.34 7.36 16 31 H 0.39 10.69 6.90 -40.82 -0.28 10.40 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.58 8.07 -51.93 -0.42 0.16 16 39 H 0.09 0.78 4.49 -51.93 -0.23 0.55 16 40 H 0.14 1.09 6.17 -52.49 -0.32 0.77 16 41 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 42 H 0.16 0.67 8.06 -52.48 -0.42 0.25 16 43 H 0.14 0.49 8.06 -52.48 -0.42 0.07 16 44 H 0.14 0.84 8.06 -52.48 -0.42 0.42 16 45 H 0.14 1.63 8.01 -52.49 -0.42 1.21 16 46 H 0.10 2.19 6.22 -51.93 -0.32 1.87 16 47 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 379.91 15.07 5.73 5.73 Total: -1.00 -35.76 379.91 -10.72 -46.48 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -6.62 Total: 7.42 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: -4.66 Total: -5.30 kcal Atomic # 7 Polarization: -61.47 SS G_CDS: -0.23 Total: -61.70 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.09 Total: -10.51 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.88 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.76 -10.72 -46.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714079481.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.563 kcal (2) G-P(sol) polarization free energy of solvation -35.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds