Wall clock time and date at job start Tue Mar 31 2020 22:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 120.00501 * 2 1 4 4 H 1.48496 * 109.47351 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46606 * 299.99788 * 3 2 1 6 6 H 1.48499 * 109.47154 * 59.99255 * 3 2 1 7 7 C 1.38820 * 119.99971 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00440 * 179.97438 * 7 2 1 9 9 N 1.36943 * 119.99678 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99920 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47153 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.49620 * 305.06448 * 11 10 9 13 13 C 1.53035 * 109.49556 * 185.00064 * 11 10 9 14 14 C 1.53042 * 109.53628 * 178.64848 * 13 11 10 15 15 C 1.53197 * 109.31288 * 61.36447 * 14 13 11 16 16 N 1.46922 * 108.88995 * 305.29528 * 15 14 13 17 17 C 1.34784 * 120.62929 * 233.67860 * 16 15 14 18 18 O 1.21562 * 120.00242 * 174.94858 * 17 16 15 19 19 C 1.47764 * 119.99797 * 354.94691 * 17 16 15 20 20 C 1.40631 * 119.80985 * 322.70978 * 19 17 16 21 21 C 1.35704 * 120.92448 * 179.77021 * 20 19 17 22 22 C 1.40754 * 120.10959 * 0.47676 * 21 20 19 23 23 N 1.33649 * 120.82780 * 179.78085 * 22 21 20 24 24 C 1.31126 * 121.39199 * 180.02562 * 23 22 21 25 25 C 1.39313 * 121.76796 * 359.97438 * 24 23 22 26 26 C 1.36578 * 119.90782 * 0.02562 * 25 24 23 27 27 C 1.40890 * 118.15619 * 359.97438 * 26 25 24 28 28 C 1.38555 * 119.80324 * 142.98060 * 19 17 16 29 29 C 1.47203 * 118.55961 * 53.54093 * 16 15 14 30 30 H 0.97001 * 119.99437 * 0.02562 * 1 2 3 31 31 H 0.96997 * 120.00038 * 0.02562 * 9 7 2 32 32 H 1.08998 * 109.46806 * 59.99891 * 10 9 7 33 33 H 1.09005 * 109.46687 * 300.00166 * 10 9 7 34 34 H 1.08999 * 109.46165 * 58.63208 * 13 11 10 35 35 H 1.09000 * 109.44575 * 298.66042 * 13 11 10 36 36 H 1.08998 * 109.50222 * 301.41325 * 14 13 11 37 37 H 1.08998 * 109.52827 * 181.33193 * 14 13 11 38 38 H 1.09000 * 109.58466 * 65.15278 * 15 14 13 39 39 H 1.09003 * 109.58852 * 185.43380 * 15 14 13 40 40 H 1.08002 * 119.53602 * 359.97438 * 20 19 17 41 41 H 1.07994 * 119.94099 * 180.25583 * 21 20 19 42 42 H 1.08004 * 119.11496 * 179.97438 * 24 23 22 43 43 H 1.08008 * 120.04494 * 180.02562 * 25 24 23 44 44 H 1.08004 * 120.92277 * 179.97438 * 26 25 24 45 45 H 1.08002 * 120.29705 * 359.95325 * 28 19 17 46 46 H 1.09002 * 109.53277 * 186.67381 * 29 16 15 47 47 H 1.09001 * 109.67747 * 66.36577 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8916 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6569 0.0005 11 6 1.0637 -4.8198 -0.0001 12 1 0.3783 -4.7128 0.8407 13 6 1.8240 -6.1419 0.1256 14 6 0.8283 -7.3037 0.1590 15 6 0.0322 -7.3263 -1.1496 16 7 -0.5876 -6.0097 -1.3522 17 6 -1.9135 -5.9009 -1.5685 18 8 -2.4291 -4.8025 -1.6431 19 6 -2.7405 -7.1167 -1.7150 20 6 -2.2231 -8.2370 -2.3895 21 6 -2.9610 -9.3668 -2.5331 22 6 -4.2675 -9.4277 -2.0130 23 7 -5.0084 -10.5315 -2.1500 24 6 -6.2269 -10.6001 -1.6703 25 6 -6.8105 -9.5306 -0.9949 26 6 -6.1093 -8.3718 -0.8192 27 6 -4.8004 -8.3019 -1.3360 28 6 -4.0232 -7.1442 -1.1919 29 6 0.2702 -4.8142 -1.3105 30 1 -0.4849 0.8401 -0.0004 31 1 0.3555 -2.3881 -0.0002 32 1 2.6846 -3.7146 0.8905 33 1 2.6846 -3.7146 -0.8895 34 1 2.4089 -6.1385 1.0454 35 1 2.4909 -6.2596 -0.7284 36 1 0.1452 -7.1735 0.9982 37 1 1.3687 -8.2435 0.2723 38 1 0.7018 -7.5468 -1.9810 39 1 -0.7432 -8.0904 -1.0925 40 1 -1.2232 -8.1988 -2.7960 41 1 -2.5463 -10.2193 -3.0504 42 1 -6.7931 -11.5103 -1.8024 43 1 -7.8163 -9.6176 -0.6107 44 1 -6.5459 -7.5323 -0.2985 45 1 -4.4204 -6.2818 -0.6774 46 1 -0.3498 -3.9190 -1.3585 47 1 0.9592 -4.8272 -2.1550 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714079481.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:56 Heat of formation + Delta-G solvation = 13.768300 kcal Electronic energy + Delta-G solvation = -28625.430845 eV Core-core repulsion = 24772.260112 eV Total energy + Delta-G solvation = -3853.170733 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.11674 -41.13822 -38.98571 -37.82752 -36.62661 -34.63289 -34.43188 -33.11111 -32.09704 -31.17493 -31.13388 -27.50953 -26.94399 -25.40884 -24.88996 -24.62243 -23.19525 -22.73113 -21.78167 -20.55966 -19.53552 -19.12568 -18.35961 -17.94038 -17.24205 -16.73648 -16.69546 -16.34927 -16.00625 -15.53812 -15.42124 -15.37085 -15.28161 -15.14336 -14.85733 -14.58005 -14.24659 -14.07571 -14.02405 -13.99697 -13.74005 -13.18945 -13.03000 -12.98081 -12.83623 -12.60107 -12.42360 -12.14373 -12.03276 -11.95021 -11.83666 -11.65876 -11.51062 -11.33675 -10.99930 -10.96433 -10.53679 -9.86543 -9.68487 -9.34877 -9.02340 -7.95714 -5.26292 -0.80507 -0.36108 0.85254 1.36901 1.44419 1.46581 1.56741 1.79683 2.11195 2.54429 3.03092 3.23270 3.36671 3.37363 3.53054 3.67442 3.74032 3.86901 3.87473 3.94642 3.97692 4.02542 4.08693 4.16902 4.25492 4.35287 4.45048 4.49267 4.59131 4.72538 4.75911 4.78206 4.85339 4.87028 4.90455 4.91091 5.00405 5.03440 5.11063 5.16223 5.21206 5.25900 5.33813 5.43880 5.46273 5.49320 5.51270 5.73712 6.24989 6.31574 6.86399 7.01333 7.30272 8.06978 8.28814 9.28069 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018517 B = 0.002379 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.728734 B =11766.511632 C =12847.433702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.082 4.082 3 Si 0.978 3.022 4 H -0.261 1.261 5 H -0.294 1.294 6 H -0.294 1.294 7 C -0.243 4.243 8 H 0.081 0.919 9 N -0.749 5.749 10 C 0.158 3.842 11 C -0.094 4.094 12 H 0.048 0.952 13 C -0.106 4.106 14 C -0.128 4.128 15 C 0.086 3.914 16 N -0.599 5.599 17 C 0.547 3.453 18 O -0.586 6.586 19 C -0.136 4.136 20 C -0.075 4.075 21 C -0.094 4.094 22 C 0.123 3.877 23 N -0.502 5.502 24 C 0.139 3.861 25 C -0.169 4.169 26 C -0.060 4.060 27 C -0.126 4.126 28 C -0.042 4.042 29 C 0.127 3.873 30 H 0.250 0.750 31 H 0.370 0.630 32 H 0.028 0.972 33 H 0.030 0.970 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.052 0.948 37 H 0.113 0.887 38 H 0.101 0.899 39 H 0.110 0.890 40 H 0.163 0.837 41 H 0.164 0.836 42 H 0.195 0.805 43 H 0.176 0.824 44 H 0.157 0.843 45 H 0.130 0.870 46 H 0.050 0.950 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.277 -29.967 -2.802 31.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.274 4.274 3 Si 0.806 3.194 4 H -0.185 1.185 5 H -0.222 1.222 6 H -0.221 1.221 7 C -0.375 4.375 8 H 0.099 0.901 9 N -0.392 5.392 10 C 0.031 3.969 11 C -0.114 4.114 12 H 0.066 0.934 13 C -0.143 4.143 14 C -0.166 4.166 15 C -0.034 4.034 16 N -0.330 5.330 17 C 0.337 3.663 18 O -0.467 6.467 19 C -0.139 4.139 20 C -0.095 4.095 21 C -0.113 4.113 22 C 0.002 3.998 23 N -0.211 5.211 24 C -0.032 4.032 25 C -0.188 4.188 26 C -0.085 4.085 27 C -0.128 4.128 28 C -0.062 4.062 29 C 0.005 3.995 30 H 0.058 0.942 31 H 0.201 0.799 32 H 0.046 0.954 33 H 0.048 0.952 34 H 0.094 0.906 35 H 0.102 0.898 36 H 0.071 0.929 37 H 0.132 0.868 38 H 0.119 0.881 39 H 0.127 0.873 40 H 0.181 0.819 41 H 0.181 0.819 42 H 0.212 0.788 43 H 0.193 0.807 44 H 0.175 0.825 45 H 0.148 0.852 46 H 0.068 0.932 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.861 -29.986 -3.308 31.175 hybrid contribution -0.600 2.608 0.607 2.744 sum -8.460 -27.378 -2.701 28.783 Atomic orbital electron populations 1.69885 1.06929 1.25946 1.59648 1.25693 0.96374 1.01538 1.03821 0.85006 0.78340 0.79439 0.76568 1.18494 1.22172 1.22079 1.19727 0.91624 0.85262 1.40908 0.90112 1.42707 1.05544 1.01550 1.89396 1.20854 0.93572 0.84138 0.98310 1.21539 0.97010 0.96483 0.96381 0.93393 1.21516 0.97710 0.91481 1.03639 1.21930 0.98011 0.99912 0.96752 1.22599 0.98584 0.82866 0.99387 1.48199 1.06185 1.09182 1.69406 1.18887 0.82414 0.88864 0.76163 1.90835 1.73005 1.29975 1.52882 1.19788 0.95322 0.94390 1.04405 1.21229 1.01163 0.90549 0.96527 1.20922 0.91489 0.99217 0.99631 1.19283 0.95411 0.89321 0.95746 1.68141 1.07958 1.24871 1.20127 1.23744 0.90221 0.99578 0.89705 1.22319 1.03105 0.93191 1.00193 1.21912 0.91684 0.99705 0.95239 1.18927 0.96708 0.94905 1.02223 1.21426 0.91982 0.96868 0.95938 1.21500 0.92743 0.87210 0.98064 0.94154 0.79856 0.95446 0.95218 0.90619 0.89820 0.92911 0.86826 0.88077 0.87260 0.81942 0.81876 0.78793 0.80676 0.82497 0.85196 0.93165 0.90257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -63.76 13.06 21.65 0.28 -63.48 16 2 C -0.08 -4.99 5.50 84.86 0.47 -4.52 16 3 Si 0.98 48.10 29.55 68.60 2.03 50.13 16 4 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16 5 H -0.29 -14.50 7.11 99.48 0.71 -13.80 16 6 H -0.29 -14.40 7.11 99.48 0.71 -13.69 16 7 C -0.24 -14.19 9.99 84.03 0.84 -13.35 16 8 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 9 N -0.75 -40.42 5.38 -343.44 -1.85 -42.26 16 10 C 0.16 6.40 5.65 86.38 0.49 6.89 16 11 C -0.09 -3.12 2.37 -10.72 -0.03 -3.15 16 12 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 13 C -0.11 -2.28 5.17 30.62 0.16 -2.13 16 14 C -0.13 -2.15 6.08 30.67 0.19 -1.97 16 15 C 0.09 1.50 4.79 86.36 0.41 1.91 16 16 N -0.60 -17.15 2.98 -821.68 -2.45 -19.61 16 17 C 0.55 18.39 7.35 86.76 0.64 19.03 16 18 O -0.59 -26.47 16.27 -3.91 -0.06 -26.54 16 19 C -0.14 -3.47 5.24 -20.10 -0.11 -3.58 16 20 C -0.07 -1.36 7.23 22.27 0.16 -1.20 16 21 C -0.09 -1.61 9.95 22.30 0.22 -1.39 16 22 C 0.12 2.50 6.61 40.35 0.27 2.77 16 23 N -0.50 -9.22 10.33 -188.45 -1.95 -11.17 16 24 C 0.14 1.65 11.15 85.06 0.95 2.60 16 25 C -0.17 -1.72 10.03 22.14 0.22 -1.50 16 26 C -0.06 -0.90 9.89 22.53 0.22 -0.68 16 27 C -0.13 -2.62 5.74 -21.29 -0.12 -2.74 16 28 C -0.04 -1.05 9.36 22.82 0.21 -0.84 16 29 C 0.13 4.47 5.54 86.31 0.48 4.95 16 30 H 0.25 15.81 8.31 -92.71 -0.77 15.04 16 31 H 0.37 22.00 6.90 -92.71 -0.64 21.36 16 32 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.03 1.16 8.14 -2.38 -0.02 1.14 16 34 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.10 1.23 8.07 -2.39 -0.02 1.21 16 39 H 0.11 1.58 4.49 -2.39 -0.01 1.57 16 40 H 0.16 2.11 6.17 -2.91 -0.02 2.09 16 41 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 42 H 0.20 0.80 8.06 -2.91 -0.02 0.78 16 43 H 0.18 0.49 8.06 -2.91 -0.02 0.47 16 44 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16 45 H 0.13 3.39 8.01 -2.91 -0.02 3.37 16 46 H 0.05 2.33 6.22 -2.39 -0.01 2.31 16 47 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 Total: -1.00 -84.34 379.91 2.02 -82.31 By element: Atomic # 1 Polarization: 29.13 SS G_CDS: 0.35 Total: 29.49 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: 5.67 Total: 1.12 kcal Atomic # 7 Polarization: -130.55 SS G_CDS: -5.96 Total: -136.52 kcal Atomic # 8 Polarization: -26.47 SS G_CDS: -0.06 Total: -26.54 kcal Atomic # 14 Polarization: 48.10 SS G_CDS: 2.03 Total: 50.13 kcal Total: -84.34 2.02 -82.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714079481.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.080 kcal (2) G-P(sol) polarization free energy of solvation -84.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds