Wall clock time and date at job start Tue Mar 31 2020 22:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99978 * 2 1 4 4 H 1.48502 * 109.47274 * 239.99861 * 3 2 1 5 5 H 1.48497 * 109.47380 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46950 * 119.99781 * 3 2 1 7 7 C 1.38815 * 120.00271 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00080 * 180.02562 * 7 2 1 9 9 N 1.36945 * 119.99627 * 359.97438 * 7 2 1 10 10 C 1.46493 * 119.99749 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47012 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.49888 * 55.06179 * 11 10 9 13 13 C 1.53046 * 109.49661 * 175.15849 * 11 10 9 14 14 C 1.53044 * 109.53611 * 181.31634 * 13 11 10 15 15 C 1.53621 * 109.24070 * 298.51164 * 14 13 11 16 16 N 1.46925 * 108.54562 * 54.85759 * 15 14 13 17 17 C 1.34781 * 120.63237 * 126.36668 * 16 15 14 18 18 O 1.21565 * 119.99910 * 185.57838 * 17 16 15 19 19 C 1.47764 * 119.99694 * 5.58378 * 17 16 15 20 20 C 1.40628 * 119.80608 * 222.11477 * 19 17 16 21 21 C 1.35697 * 120.92793 * 179.97438 * 20 19 17 22 22 C 1.40754 * 120.10897 * 0.02562 * 21 20 19 23 23 N 1.33654 * 120.83231 * 180.24621 * 22 21 20 24 24 C 1.31121 * 121.39337 * 180.28224 * 23 22 21 25 25 C 1.39313 * 121.77062 * 359.43822 * 24 23 22 26 26 C 1.36581 * 119.90414 * 0.28115 * 25 24 23 27 27 C 1.40892 * 118.15888 * 359.97438 * 26 25 24 28 28 C 1.38558 * 119.80717 * 42.11845 * 19 17 16 29 29 C 1.46928 * 118.73686 * 306.09221 * 16 15 14 30 30 H 0.97000 * 119.99943 * 0.02562 * 1 2 3 31 31 H 0.96993 * 119.99792 * 359.97438 * 9 7 2 32 32 H 1.08996 * 109.47768 * 59.99439 * 10 9 7 33 33 H 1.09007 * 109.46985 * 299.99590 * 10 9 7 34 34 H 1.08999 * 109.46000 * 301.33569 * 13 11 10 35 35 H 1.08998 * 109.45854 * 61.31133 * 13 11 10 36 36 H 1.08998 * 109.49809 * 58.58401 * 14 13 11 37 37 H 1.09001 * 109.49551 * 178.65091 * 14 13 11 38 38 H 1.09002 * 109.74144 * 295.11766 * 15 14 13 39 39 H 1.08999 * 109.66698 * 174.54879 * 15 14 13 40 40 H 1.08014 * 119.53541 * 0.02562 * 20 19 17 41 41 H 1.08001 * 119.94537 * 180.02562 * 21 20 19 42 42 H 1.08001 * 119.11212 * 179.71908 * 24 23 22 43 43 H 1.07995 * 120.04852 * 180.25373 * 25 24 23 44 44 H 1.07997 * 120.92000 * 179.97438 * 26 25 24 45 45 H 1.07995 * 120.29320 * 0.02562 * 28 19 17 46 46 H 1.09004 * 109.58684 * 173.64684 * 29 16 15 47 47 H 1.09003 * 109.58857 * 293.93177 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6567 -0.0005 11 6 1.0638 -4.8197 -0.0012 12 1 0.3805 -4.7137 -0.8437 13 6 1.8246 -6.1420 -0.1229 14 6 0.8291 -7.3040 -0.1567 15 6 0.0308 -7.3249 1.1556 16 7 -0.5879 -6.0061 1.3473 17 6 -1.9139 -5.8942 1.5613 18 8 -2.4299 -4.7949 1.6172 19 6 -2.7404 -7.1077 1.7279 20 6 -3.9994 -7.1868 1.1064 21 6 -4.7769 -8.2905 1.2438 22 6 -4.3288 -9.3781 2.0168 23 7 -5.0806 -10.4741 2.1578 24 6 -4.6765 -11.4913 2.8797 25 6 -3.4422 -11.4880 3.5258 26 6 -2.6210 -10.4018 3.4195 27 6 -3.0610 -9.3086 2.6473 28 6 -2.2703 -8.1611 2.4956 29 6 0.2673 -4.8121 1.3073 30 1 -0.4850 0.8400 -0.0004 31 1 0.3556 -2.3881 0.0002 32 1 2.6848 -3.7145 0.8893 33 1 2.6847 -3.7145 -0.8906 34 1 2.4116 -6.1400 -1.0413 35 1 2.4895 -6.2586 0.7328 36 1 0.1479 -7.1751 -0.9978 37 1 1.3703 -8.2436 -0.2675 38 1 0.6989 -7.5398 1.9896 39 1 -0.7455 -8.0881 1.1006 40 1 -4.3522 -6.3577 0.5107 41 1 -5.7410 -8.3344 0.7591 42 1 -5.3158 -12.3569 2.9724 43 1 -3.1354 -12.3428 4.1101 44 1 -1.6610 -10.3815 3.9138 45 1 -1.3035 -8.0985 2.9726 46 1 -0.3528 -3.9168 1.3524 47 1 0.9526 -4.8249 2.1548 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714079482.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:02 Heat of formation + Delta-G solvation = 34.374030 kcal Electronic energy + Delta-G solvation = -28698.556918 eV Core-core repulsion = 24846.279716 eV Total energy + Delta-G solvation = -3852.277202 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.32140 -40.11408 -37.83767 -36.84637 -34.97208 -33.92861 -32.93385 -31.70698 -31.03209 -30.58195 -29.54400 -26.12019 -25.56395 -24.61469 -23.85489 -23.20654 -22.48601 -21.45292 -20.58059 -19.50594 -18.46362 -17.63820 -17.20882 -16.98651 -16.37096 -15.82647 -15.29676 -14.91548 -14.69857 -14.69486 -14.57888 -14.37658 -14.22516 -13.70184 -13.51351 -13.45197 -13.42375 -12.98489 -12.87874 -12.68028 -12.53238 -12.24380 -11.99891 -11.76804 -11.43554 -11.12267 -11.03638 -10.92351 -10.80604 -10.64773 -10.40811 -10.30165 -10.02102 -9.92603 -9.75796 -9.58331 -9.14384 -8.83383 -8.61805 -8.51075 -6.87094 -5.69283 -2.99341 -0.10416 0.36388 1.55383 2.25599 2.85578 3.08459 3.47795 3.51671 3.53546 3.73347 3.89885 4.15000 4.26304 4.33008 4.46081 4.60578 4.66556 4.69218 4.76243 4.85927 4.92776 4.97756 5.07649 5.18621 5.28564 5.36953 5.40436 5.49403 5.55763 5.63202 5.63474 5.66471 5.78191 5.82431 5.88486 5.92597 6.02955 6.09007 6.11156 6.12519 6.20434 6.38677 6.40745 6.53617 6.62517 6.77598 6.88543 7.42035 7.51314 7.74197 8.18304 8.48385 9.59216 10.17147 10.51315 11.52895 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021738 B = 0.002345 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.741223 B =11939.453196 C =12762.970346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.013 4.013 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.243 4.243 8 H 0.069 0.931 9 N -0.733 5.733 10 C 0.161 3.839 11 C -0.107 4.107 12 H 0.075 0.925 13 C -0.112 4.112 14 C -0.133 4.133 15 C 0.097 3.903 16 N -0.604 5.604 17 C 0.551 3.449 18 O -0.517 6.517 19 C -0.111 4.111 20 C -0.056 4.056 21 C -0.097 4.097 22 C 0.139 3.861 23 N -0.476 5.476 24 C 0.136 3.864 25 C -0.180 4.180 26 C -0.049 4.049 27 C -0.110 4.110 28 C -0.063 4.063 29 C 0.120 3.880 30 H 0.256 0.744 31 H 0.385 0.615 32 H 0.019 0.981 33 H 0.022 0.978 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.087 0.913 40 H 0.141 0.859 41 H 0.142 0.858 42 H 0.160 0.840 43 H 0.139 0.861 44 H 0.141 0.859 45 H 0.140 0.860 46 H 0.105 0.895 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.743 -28.736 5.905 29.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.374 4.374 8 H 0.087 0.913 9 N -0.378 5.378 10 C 0.033 3.967 11 C -0.126 4.126 12 H 0.093 0.907 13 C -0.151 4.151 14 C -0.171 4.171 15 C -0.026 4.026 16 N -0.337 5.337 17 C 0.339 3.661 18 O -0.393 6.393 19 C -0.114 4.114 20 C -0.076 4.076 21 C -0.115 4.115 22 C 0.018 3.982 23 N -0.184 5.184 24 C -0.037 4.037 25 C -0.200 4.200 26 C -0.075 4.075 27 C -0.112 4.112 28 C -0.083 4.083 29 C -0.001 4.001 30 H 0.066 0.934 31 H 0.219 0.781 32 H 0.037 0.963 33 H 0.039 0.961 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.105 0.895 40 H 0.159 0.841 41 H 0.160 0.840 42 H 0.177 0.823 43 H 0.157 0.843 44 H 0.159 0.841 45 H 0.158 0.842 46 H 0.123 0.877 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.705 -27.906 5.464 29.003 hybrid contribution 1.083 0.855 0.460 1.454 sum -4.622 -27.051 5.923 28.075 Atomic orbital electron populations 1.69664 1.05055 1.25774 1.57265 1.24765 0.95500 0.97683 1.02971 0.86280 0.78498 0.83681 0.77765 1.21325 1.21705 1.21306 1.19154 0.90923 0.84184 1.43170 0.91290 1.42411 1.05956 0.99924 1.89499 1.20628 0.92945 0.85172 0.97989 1.21685 0.97976 0.95140 0.97845 0.90699 1.21530 0.97446 0.93729 1.02347 1.21990 0.98604 0.99146 0.97411 1.22150 0.97525 0.84865 0.98074 1.48098 1.06702 1.08265 1.70652 1.18297 0.81841 0.88610 0.77398 1.90888 1.71667 1.27139 1.49593 1.20049 0.96061 0.94604 1.00693 1.20917 0.91774 0.97880 0.97036 1.20719 1.00695 0.91487 0.98626 1.19000 0.90264 0.93117 0.95844 1.68078 1.33801 1.00167 1.16384 1.23032 0.93857 0.96080 0.90706 1.21896 0.96028 0.99834 1.02265 1.21541 0.99560 0.91825 0.94596 1.18746 0.95949 0.95899 1.00609 1.21537 0.98956 0.90982 0.96789 1.21781 0.93226 0.87760 0.97330 0.93411 0.78057 0.96278 0.96067 0.91459 0.91748 0.91421 0.90903 0.91217 0.89483 0.84089 0.84022 0.82298 0.84332 0.84120 0.84246 0.87675 0.91399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.14 13.06 55.49 0.72 -28.42 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.91 29.55 -169.99 -5.02 17.89 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 6 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 7 C -0.24 -6.95 9.99 -15.05 -0.15 -7.10 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.73 -18.98 5.38 -59.91 -0.32 -19.30 16 10 C 0.16 3.22 5.65 -4.05 -0.02 3.19 16 11 C -0.11 -1.72 2.38 -90.50 -0.22 -1.94 16 12 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 13 C -0.11 -1.33 5.17 -26.68 -0.14 -1.47 16 14 C -0.13 -1.30 6.10 -26.39 -0.16 -1.46 16 15 C 0.10 0.94 4.96 -3.49 -0.02 0.92 16 16 N -0.60 -8.37 2.97 -173.64 -0.52 -8.88 16 17 C 0.55 8.60 7.28 -12.36 -0.09 8.51 16 18 O -0.52 -10.55 16.36 5.31 0.09 -10.46 16 19 C -0.11 -1.36 5.07 -104.98 -0.53 -1.89 16 20 C -0.06 -0.65 9.54 -39.59 -0.38 -1.02 16 21 C -0.10 -1.02 9.95 -39.54 -0.39 -1.42 16 22 C 0.14 1.50 6.61 -84.78 -0.56 0.94 16 23 N -0.48 -4.91 10.33 -10.92 -0.11 -5.03 16 24 C 0.14 0.97 11.15 -17.46 -0.19 0.78 16 25 C -0.18 -1.03 10.03 -39.78 -0.40 -1.43 16 26 C -0.05 -0.33 9.89 -39.18 -0.39 -0.72 16 27 C -0.11 -1.04 5.74 -106.82 -0.61 -1.65 16 28 C -0.06 -0.61 7.13 -38.74 -0.28 -0.89 16 29 C 0.12 1.99 5.52 -3.71 -0.02 1.97 16 30 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 31 H 0.39 10.70 6.89 -40.82 -0.28 10.42 16 32 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.56 8.13 -51.93 -0.42 0.13 16 39 H 0.09 0.74 4.82 -51.93 -0.25 0.49 16 40 H 0.14 1.62 8.06 -52.48 -0.42 1.20 16 41 H 0.14 1.28 8.06 -52.49 -0.42 0.85 16 42 H 0.16 0.64 8.06 -52.49 -0.42 0.21 16 43 H 0.14 0.37 8.06 -52.49 -0.42 -0.05 16 44 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 45 H 0.14 1.07 6.74 -52.49 -0.35 0.72 16 46 H 0.10 2.20 6.20 -51.93 -0.32 1.88 16 47 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 380.96 15.07 5.74 5.74 Total: -1.00 -35.76 380.96 -10.74 -46.50 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -6.67 Total: 7.12 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: -4.64 Total: -5.15 kcal Atomic # 7 Polarization: -61.41 SS G_CDS: -0.23 Total: -61.63 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.09 Total: -10.46 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.89 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.76 -10.74 -46.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714079482.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.874 kcal (2) G-P(sol) polarization free energy of solvation -35.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds