Wall clock time and date at job start Tue Mar 31 2020 22:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99978 * 2 1 4 4 H 1.48502 * 109.47274 * 239.99861 * 3 2 1 5 5 H 1.48497 * 109.47380 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46950 * 119.99781 * 3 2 1 7 7 C 1.38815 * 120.00271 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00080 * 180.02562 * 7 2 1 9 9 N 1.36945 * 119.99627 * 359.97438 * 7 2 1 10 10 C 1.46493 * 119.99749 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47012 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.49888 * 55.06179 * 11 10 9 13 13 C 1.53046 * 109.49661 * 175.15849 * 11 10 9 14 14 C 1.53044 * 109.53611 * 181.31634 * 13 11 10 15 15 C 1.53621 * 109.24070 * 298.51164 * 14 13 11 16 16 N 1.46925 * 108.54562 * 54.85759 * 15 14 13 17 17 C 1.34781 * 120.63237 * 126.36668 * 16 15 14 18 18 O 1.21565 * 119.99910 * 185.57838 * 17 16 15 19 19 C 1.47764 * 119.99694 * 5.58378 * 17 16 15 20 20 C 1.40628 * 119.80608 * 222.11477 * 19 17 16 21 21 C 1.35697 * 120.92793 * 179.97438 * 20 19 17 22 22 C 1.40754 * 120.10897 * 0.02562 * 21 20 19 23 23 N 1.33654 * 120.83231 * 180.24621 * 22 21 20 24 24 C 1.31121 * 121.39337 * 180.28224 * 23 22 21 25 25 C 1.39313 * 121.77062 * 359.43822 * 24 23 22 26 26 C 1.36581 * 119.90414 * 0.28115 * 25 24 23 27 27 C 1.40892 * 118.15888 * 359.97438 * 26 25 24 28 28 C 1.38558 * 119.80717 * 42.11845 * 19 17 16 29 29 C 1.46928 * 118.73686 * 306.09221 * 16 15 14 30 30 H 0.97000 * 119.99943 * 0.02562 * 1 2 3 31 31 H 0.96993 * 119.99792 * 359.97438 * 9 7 2 32 32 H 1.08996 * 109.47768 * 59.99439 * 10 9 7 33 33 H 1.09007 * 109.46985 * 299.99590 * 10 9 7 34 34 H 1.08999 * 109.46000 * 301.33569 * 13 11 10 35 35 H 1.08998 * 109.45854 * 61.31133 * 13 11 10 36 36 H 1.08998 * 109.49809 * 58.58401 * 14 13 11 37 37 H 1.09001 * 109.49551 * 178.65091 * 14 13 11 38 38 H 1.09002 * 109.74144 * 295.11766 * 15 14 13 39 39 H 1.08999 * 109.66698 * 174.54879 * 15 14 13 40 40 H 1.08014 * 119.53541 * 0.02562 * 20 19 17 41 41 H 1.08001 * 119.94537 * 180.02562 * 21 20 19 42 42 H 1.08001 * 119.11212 * 179.71908 * 24 23 22 43 43 H 1.07995 * 120.04852 * 180.25373 * 25 24 23 44 44 H 1.07997 * 120.92000 * 179.97438 * 26 25 24 45 45 H 1.07995 * 120.29320 * 0.02562 * 28 19 17 46 46 H 1.09004 * 109.58684 * 173.64684 * 29 16 15 47 47 H 1.09003 * 109.58857 * 293.93177 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6567 -0.0005 11 6 1.0638 -4.8197 -0.0012 12 1 0.3805 -4.7137 -0.8437 13 6 1.8246 -6.1420 -0.1229 14 6 0.8291 -7.3040 -0.1567 15 6 0.0308 -7.3249 1.1556 16 7 -0.5879 -6.0061 1.3473 17 6 -1.9139 -5.8942 1.5613 18 8 -2.4299 -4.7949 1.6172 19 6 -2.7404 -7.1077 1.7279 20 6 -3.9994 -7.1868 1.1064 21 6 -4.7769 -8.2905 1.2438 22 6 -4.3288 -9.3781 2.0168 23 7 -5.0806 -10.4741 2.1578 24 6 -4.6765 -11.4913 2.8797 25 6 -3.4422 -11.4880 3.5258 26 6 -2.6210 -10.4018 3.4195 27 6 -3.0610 -9.3086 2.6473 28 6 -2.2703 -8.1611 2.4956 29 6 0.2673 -4.8121 1.3073 30 1 -0.4850 0.8400 -0.0004 31 1 0.3556 -2.3881 0.0002 32 1 2.6848 -3.7145 0.8893 33 1 2.6847 -3.7145 -0.8906 34 1 2.4116 -6.1400 -1.0413 35 1 2.4895 -6.2586 0.7328 36 1 0.1479 -7.1751 -0.9978 37 1 1.3703 -8.2436 -0.2675 38 1 0.6989 -7.5398 1.9896 39 1 -0.7455 -8.0881 1.1006 40 1 -4.3522 -6.3577 0.5107 41 1 -5.7410 -8.3344 0.7591 42 1 -5.3158 -12.3569 2.9724 43 1 -3.1354 -12.3428 4.1101 44 1 -1.6610 -10.3815 3.9138 45 1 -1.3035 -8.0985 2.9726 46 1 -0.3528 -3.9168 1.3524 47 1 0.9526 -4.8249 2.1548 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714079482.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:01 Heat of formation + Delta-G solvation = 10.803664 kcal Electronic energy + Delta-G solvation = -28699.579006 eV Core-core repulsion = 24846.279716 eV Total energy + Delta-G solvation = -3853.299289 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.11201 -41.11429 -38.99672 -37.75239 -36.63871 -34.77044 -34.29947 -33.10586 -31.97576 -31.50000 -30.90229 -27.37319 -26.97324 -25.36052 -24.95060 -24.59159 -23.25646 -22.66584 -21.82189 -20.58879 -19.30940 -19.10376 -18.45147 -17.92197 -17.35260 -16.79107 -16.70615 -16.28347 -15.89148 -15.58815 -15.42586 -15.33847 -15.29021 -15.16447 -14.95108 -14.37267 -14.17961 -14.12891 -14.05566 -13.95783 -13.76558 -13.16494 -13.02905 -12.96571 -12.76793 -12.55446 -12.50072 -12.21610 -12.08800 -11.94232 -11.85353 -11.64273 -11.50900 -11.33571 -11.00670 -10.94668 -10.47681 -9.89133 -9.68820 -9.30874 -9.02027 -7.94913 -5.25765 -0.78372 -0.33082 0.88943 1.36954 1.44352 1.48961 1.55247 1.79227 2.10099 2.55020 3.04641 3.22747 3.37368 3.37714 3.52102 3.70446 3.74015 3.86120 3.88829 3.98158 3.99039 4.05420 4.08400 4.21002 4.27878 4.33234 4.43644 4.51988 4.57834 4.71211 4.75207 4.78130 4.84670 4.87251 4.90071 4.93045 5.02075 5.03653 5.10074 5.20358 5.24039 5.25243 5.34192 5.45034 5.46110 5.48661 5.51286 5.76546 6.25270 6.30993 6.91529 7.01848 7.30613 8.07674 8.29374 9.28438 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021738 B = 0.002345 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.741223 B =11939.453196 C =12762.970346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.082 4.082 3 Si 0.979 3.021 4 H -0.275 1.275 5 H -0.298 1.298 6 H -0.274 1.274 7 C -0.246 4.246 8 H 0.081 0.919 9 N -0.750 5.750 10 C 0.158 3.842 11 C -0.095 4.095 12 H 0.046 0.954 13 C -0.105 4.105 14 C -0.128 4.128 15 C 0.091 3.909 16 N -0.599 5.599 17 C 0.547 3.453 18 O -0.585 6.585 19 C -0.136 4.136 20 C -0.071 4.071 21 C -0.101 4.101 22 C 0.123 3.877 23 N -0.513 5.513 24 C 0.138 3.862 25 C -0.170 4.170 26 C -0.046 4.046 27 C -0.123 4.123 28 C -0.038 4.038 29 C 0.127 3.873 30 H 0.250 0.750 31 H 0.370 0.630 32 H 0.031 0.969 33 H 0.027 0.973 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.051 0.949 37 H 0.113 0.887 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.124 0.876 41 H 0.146 0.854 42 H 0.190 0.810 43 H 0.179 0.821 44 H 0.177 0.823 45 H 0.166 0.834 46 H 0.049 0.951 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.101 -33.231 7.549 34.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.274 4.274 3 Si 0.807 3.193 4 H -0.200 1.200 5 H -0.225 1.225 6 H -0.200 1.200 7 C -0.378 4.378 8 H 0.099 0.901 9 N -0.392 5.392 10 C 0.031 3.969 11 C -0.115 4.115 12 H 0.065 0.935 13 C -0.143 4.143 14 C -0.166 4.166 15 C -0.030 4.030 16 N -0.330 5.330 17 C 0.336 3.664 18 O -0.466 6.466 19 C -0.140 4.140 20 C -0.092 4.092 21 C -0.120 4.120 22 C 0.002 3.998 23 N -0.222 5.222 24 C -0.034 4.034 25 C -0.190 4.190 26 C -0.072 4.072 27 C -0.125 4.125 28 C -0.057 4.057 29 C 0.005 3.995 30 H 0.059 0.941 31 H 0.201 0.799 32 H 0.049 0.951 33 H 0.045 0.955 34 H 0.093 0.907 35 H 0.103 0.897 36 H 0.070 0.930 37 H 0.132 0.868 38 H 0.122 0.878 39 H 0.122 0.878 40 H 0.142 0.858 41 H 0.164 0.836 42 H 0.207 0.793 43 H 0.196 0.804 44 H 0.194 0.806 45 H 0.184 0.816 46 H 0.068 0.932 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.989 -32.486 7.098 33.386 hybrid contribution 0.250 1.992 0.010 2.008 sum -2.738 -30.493 7.108 31.430 Atomic orbital electron populations 1.69872 1.06956 1.26114 1.59485 1.25701 0.96356 1.01582 1.03759 0.85137 0.77068 0.78711 0.78390 1.20045 1.22461 1.20034 1.19655 0.91613 0.85284 1.41222 0.90116 1.42696 1.05530 1.01551 1.89438 1.20852 0.93568 0.84140 0.98295 1.21547 0.96997 0.96512 0.96417 0.93521 1.21513 0.97682 0.91420 1.03668 1.21997 0.98000 0.99890 0.96723 1.22556 0.98405 0.82601 0.99439 1.48167 1.06079 1.09181 1.69549 1.18901 0.82430 0.88862 0.76161 1.90844 1.72995 1.29896 1.52847 1.19744 0.96134 0.94365 1.03712 1.20803 0.92365 0.98064 0.97933 1.20759 1.00744 0.91477 0.99025 1.19157 0.91238 0.93305 0.96106 1.68098 1.34715 1.00972 1.18444 1.23742 0.94916 0.95790 0.88917 1.22349 0.94785 1.00632 1.01206 1.21978 1.01044 0.90663 0.93465 1.18944 0.95429 0.96798 1.01328 1.21736 0.99577 0.89738 0.94659 1.21457 0.92754 0.87232 0.98074 0.94147 0.79875 0.95136 0.95550 0.90692 0.89678 0.93036 0.86845 0.87817 0.87847 0.85779 0.83586 0.79331 0.80351 0.80590 0.81619 0.93218 0.90102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -64.04 13.06 21.65 0.28 -63.76 16 2 C -0.08 -4.98 5.50 84.86 0.47 -4.51 16 3 Si 0.98 48.12 29.55 68.60 2.03 50.15 16 4 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 5 H -0.30 -14.87 7.11 99.48 0.71 -14.16 16 6 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 7 C -0.25 -14.35 9.99 84.03 0.84 -13.51 16 8 H 0.08 4.42 7.83 -2.91 -0.02 4.39 16 9 N -0.75 -40.47 5.38 -343.46 -1.85 -42.32 16 10 C 0.16 6.38 5.65 86.38 0.49 6.87 16 11 C -0.09 -3.12 2.38 -10.71 -0.03 -3.15 16 12 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 13 C -0.10 -2.22 5.17 30.62 0.16 -2.06 16 14 C -0.13 -2.09 6.10 30.82 0.19 -1.90 16 15 C 0.09 1.49 4.96 86.51 0.43 1.92 16 16 N -0.60 -16.83 2.97 -821.55 -2.44 -19.26 16 17 C 0.55 18.35 7.28 86.76 0.63 18.98 16 18 O -0.59 -26.72 16.36 -3.92 -0.06 -26.79 16 19 C -0.14 -3.48 5.07 -20.10 -0.10 -3.59 16 20 C -0.07 -1.83 9.54 22.26 0.21 -1.62 16 21 C -0.10 -2.29 9.95 22.30 0.22 -2.07 16 22 C 0.12 2.56 6.61 40.35 0.27 2.82 16 23 N -0.51 -9.80 10.33 -188.45 -1.95 -11.75 16 24 C 0.14 1.49 11.15 85.06 0.95 2.44 16 25 C -0.17 -1.08 10.03 22.14 0.22 -0.85 16 26 C -0.05 -0.39 9.89 22.53 0.22 -0.17 16 27 C -0.12 -2.00 5.74 -21.29 -0.12 -2.13 16 28 C -0.04 -0.66 7.13 22.82 0.16 -0.50 16 29 C 0.13 4.42 5.52 86.36 0.48 4.89 16 30 H 0.25 15.96 8.31 -92.71 -0.77 15.19 16 31 H 0.37 22.07 6.89 -92.71 -0.64 21.43 16 32 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.03 1.05 8.14 -2.38 -0.02 1.03 16 34 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.10 1.10 8.13 -2.39 -0.02 1.08 16 39 H 0.10 1.42 4.82 -2.39 -0.01 1.41 16 40 H 0.12 3.43 8.06 -2.90 -0.02 3.41 16 41 H 0.15 2.93 8.06 -2.91 -0.02 2.90 16 42 H 0.19 0.72 8.06 -2.91 -0.02 0.70 16 43 H 0.18 -0.25 8.06 -2.91 -0.02 -0.27 16 44 H 0.18 0.25 8.06 -2.91 -0.02 0.22 16 45 H 0.17 1.90 6.74 -2.91 -0.02 1.88 16 46 H 0.05 2.30 6.20 -2.38 -0.01 2.28 16 47 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 Total: -1.00 -86.19 380.96 2.05 -84.14 By element: Atomic # 1 Polarization: 27.37 SS G_CDS: 0.35 Total: 27.72 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: 5.69 Total: 1.86 kcal Atomic # 7 Polarization: -131.14 SS G_CDS: -5.95 Total: -137.09 kcal Atomic # 8 Polarization: -26.72 SS G_CDS: -0.06 Total: -26.79 kcal Atomic # 14 Polarization: 48.12 SS G_CDS: 2.03 Total: 50.15 kcal Total: -86.19 2.05 -84.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714079482.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.941 kcal (2) G-P(sol) polarization free energy of solvation -86.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds