Wall clock time and date at job start Tue Mar 31 2020 23:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 120.00223 * 2 1 4 4 H 1.48496 * 109.47353 * 89.99478 * 3 2 1 5 5 H 1.48492 * 109.47195 * 210.00077 * 3 2 1 6 6 H 1.48499 * 109.46551 * 329.99796 * 3 2 1 7 7 C 1.38820 * 120.00014 * 180.27116 * 2 1 3 8 8 H 1.07997 * 119.99893 * 180.02562 * 7 2 1 9 9 N 1.36931 * 119.99643 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99634 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47185 * 180.02562 * 10 9 7 12 12 C 1.52992 * 109.47434 * 180.02562 * 11 10 9 13 13 H 1.09005 * 110.88523 * 54.30094 * 12 11 10 14 14 C 1.55158 * 111.00923 * 178.17785 * 12 11 10 15 15 C 1.54326 * 102.94526 * 153.57519 * 14 12 11 16 16 N 1.47019 * 107.27067 * 337.81414 * 15 14 12 17 17 C 1.34776 * 125.65147 * 178.99268 * 16 15 14 18 18 O 1.21585 * 120.00332 * 175.10592 * 17 16 15 19 19 C 1.47556 * 119.99710 * 355.11004 * 17 16 15 20 20 C 1.38698 * 120.38751 * 48.84441 * 19 17 16 21 21 C 1.38963 * 120.53924 * 179.97438 * 20 19 17 22 22 C 1.36208 * 121.23451 * 0.02562 * 21 20 19 23 23 C 1.40716 * 120.20184 * 359.97438 * 22 21 20 24 24 N 1.33692 * 120.93783 * 179.97438 * 23 22 21 25 25 C 1.31068 * 121.33923 * 180.02562 * 24 23 22 26 26 C 1.39345 * 121.70432 * 0.02562 * 25 24 23 27 27 C 1.36677 * 119.86917 * 359.97438 * 26 25 24 28 28 C 1.40471 * 118.16837 * 359.75222 * 27 26 25 29 29 C 1.47478 * 108.72312 * 358.96850 * 16 15 14 30 30 H 0.96996 * 120.00052 * 359.72668 * 1 2 3 31 31 H 0.97002 * 120.00674 * 0.02562 * 9 7 2 32 32 H 1.09000 * 109.47595 * 300.00318 * 10 9 7 33 33 H 1.08999 * 109.47206 * 60.00726 * 10 9 7 34 34 H 1.09000 * 109.46893 * 300.00478 * 11 10 9 35 35 H 1.09001 * 109.47394 * 59.99988 * 11 10 9 36 36 H 1.09000 * 110.72266 * 271.94832 * 14 12 11 37 37 H 1.09005 * 110.71464 * 35.21887 * 14 12 11 38 38 H 1.08998 * 109.87836 * 97.22876 * 15 14 12 39 39 H 1.08997 * 109.88248 * 218.39127 * 15 14 12 40 40 H 1.08003 * 119.72843 * 359.97438 * 20 19 17 41 41 H 1.07997 * 119.38494 * 180.02562 * 21 20 19 42 42 H 1.07998 * 119.90047 * 179.97438 * 22 21 20 43 43 H 1.07998 * 119.14879 * 179.97438 * 25 24 23 44 44 H 1.07995 * 120.06005 * 180.02562 * 26 25 24 45 45 H 1.07999 * 120.91377 * 180.02562 * 27 26 25 46 46 H 1.08997 * 110.34891 * 265.25494 * 29 16 15 47 47 H 1.09004 * 110.40274 * 142.91550 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 1.4000 5 1 3.5477 1.4401 -0.7000 6 1 1.4477 2.6526 -0.7001 7 6 2.0103 -1.2022 -0.0057 8 1 3.0903 -1.2022 -0.0053 9 7 1.3256 -2.3880 -0.0108 10 6 2.0581 -3.6567 -0.0173 11 6 1.0638 -4.8197 -0.0227 12 6 1.8287 -6.1446 -0.0289 13 1 2.5377 -6.1879 0.7979 14 6 0.8531 -7.3504 0.0115 15 6 1.6638 -8.4741 -0.6678 16 7 2.6925 -7.8298 -1.4975 17 6 3.6185 -8.4700 -2.2385 18 8 4.3662 -7.8359 -2.9576 19 6 3.7248 -9.9404 -2.1772 20 6 2.5929 -10.7316 -2.3058 21 6 2.6895 -12.1168 -2.2491 22 6 3.8897 -12.7342 -2.0662 23 6 5.0646 -11.9718 -1.9308 24 7 6.2503 -12.5624 -1.7503 25 6 7.3495 -11.8600 -1.6228 26 6 7.3380 -10.4673 -1.6682 27 6 6.1580 -9.8020 -1.8503 28 6 4.9842 -10.5603 -1.9922 29 6 2.5433 -6.3669 -1.3853 30 1 -0.4850 0.8400 0.0040 31 1 0.3555 -2.3881 -0.0108 32 1 2.6841 -3.7103 -0.9080 33 1 2.6853 -3.7187 0.8719 34 1 0.4375 -4.7663 0.8677 35 1 0.4368 -4.7576 -0.9122 36 1 0.6117 -7.6169 1.0405 37 1 -0.0529 -7.1325 -0.5542 38 1 2.1365 -9.0998 0.0893 39 1 1.0074 -9.0783 -1.2939 40 1 1.6287 -10.2674 -2.4513 41 1 1.7961 -12.7149 -2.3519 42 1 3.9398 -13.8122 -2.0251 43 1 8.2883 -12.3738 -1.4779 44 1 8.2597 -9.9149 -1.5605 45 1 6.1297 -8.7230 -1.8885 46 1 1.9325 -5.9844 -2.2030 47 1 3.5206 -5.8843 -1.3827 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717093164.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:40 Heat of formation + Delta-G solvation = 33.511442 kcal Electronic energy + Delta-G solvation = -28102.699403 eV Core-core repulsion = 24250.384796 eV Total energy + Delta-G solvation = -3852.314606 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.45079 -40.07029 -37.99606 -37.26168 -35.18702 -33.80259 -33.06730 -31.24558 -31.00058 -30.46637 -29.58176 -27.23638 -25.30328 -24.42736 -23.94503 -23.31660 -22.66245 -21.31751 -20.23290 -19.77167 -18.75746 -17.61833 -17.39839 -17.07793 -16.76553 -16.18217 -15.68020 -15.14043 -14.94822 -14.68055 -14.64784 -14.43092 -14.09941 -13.69746 -13.61113 -13.40279 -13.31962 -13.15893 -12.95377 -12.74991 -12.40761 -12.26974 -12.12246 -11.78378 -11.72576 -11.34132 -11.09984 -10.93891 -10.84357 -10.69209 -10.51075 -10.40199 -10.37821 -10.00090 -9.75740 -9.67624 -9.22466 -8.89351 -8.86516 -8.65279 -6.91807 -5.76212 -3.04755 -0.18579 0.40115 1.40529 2.27681 2.54262 2.78238 3.44284 3.49443 3.51308 3.70199 3.85771 3.98391 4.27968 4.35409 4.38828 4.40557 4.54377 4.60800 4.63257 4.69023 4.74484 4.89488 5.01126 5.03724 5.19989 5.33952 5.35699 5.39909 5.49698 5.55485 5.56304 5.61775 5.67667 5.73944 5.76585 5.84524 5.85444 5.90837 6.01041 6.04442 6.12057 6.21053 6.34427 6.34856 6.35703 6.82336 6.86322 7.22646 7.48903 7.70886 7.83696 8.43009 9.54007 10.12040 10.46460 11.46790 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019791 B = 0.002045 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.464422 B =13685.313763 C =14687.044743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.282 1.282 6 H -0.291 1.291 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.734 5.734 10 C 0.151 3.849 11 C -0.115 4.115 12 C -0.094 4.094 13 H 0.086 0.914 14 C -0.129 4.129 15 C 0.096 3.904 16 N -0.610 5.610 17 C 0.572 3.428 18 O -0.528 6.528 19 C -0.098 4.098 20 C -0.083 4.083 21 C -0.106 4.106 22 C -0.074 4.074 23 C 0.123 3.877 24 N -0.476 5.476 25 C 0.134 3.866 26 C -0.173 4.173 27 C -0.050 4.050 28 C -0.069 4.069 29 C 0.110 3.890 30 H 0.255 0.745 31 H 0.383 0.617 32 H 0.019 0.981 33 H 0.018 0.982 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.137 0.863 41 H 0.138 0.862 42 H 0.140 0.860 43 H 0.162 0.838 44 H 0.141 0.859 45 H 0.148 0.852 46 H 0.076 0.924 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.428 -29.928 -1.792 30.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.207 1.207 6 H -0.218 1.218 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.378 5.378 10 C 0.023 3.977 11 C -0.153 4.153 12 C -0.114 4.114 13 H 0.104 0.896 14 C -0.167 4.167 15 C -0.026 4.026 16 N -0.343 5.343 17 C 0.361 3.639 18 O -0.406 6.406 19 C -0.102 4.102 20 C -0.102 4.102 21 C -0.126 4.126 22 C -0.092 4.092 23 C 0.002 3.998 24 N -0.184 5.184 25 C -0.038 4.038 26 C -0.193 4.193 27 C -0.076 4.076 28 C -0.071 4.071 29 C -0.011 4.011 30 H 0.065 0.935 31 H 0.217 0.783 32 H 0.037 0.963 33 H 0.035 0.965 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.103 0.897 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.154 0.846 41 H 0.156 0.844 42 H 0.157 0.843 43 H 0.179 0.821 44 H 0.159 0.841 45 H 0.165 0.835 46 H 0.094 0.906 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.937 -30.431 -2.220 31.291 hybrid contribution 0.112 1.879 -0.038 1.882 sum 7.050 -28.553 -2.258 29.497 Atomic orbital electron populations 1.69657 1.05106 1.25635 1.57923 1.24753 0.95557 0.97735 1.03099 0.86178 0.78684 0.83789 0.77508 1.21724 1.20738 1.21750 1.19240 0.91051 0.84205 1.42488 0.91199 1.42362 1.05868 1.00086 1.89516 1.20681 0.93559 0.85597 0.97821 1.21686 0.98580 0.92380 1.02629 1.22354 0.97245 0.95013 0.96761 0.89607 1.22748 0.98385 0.94041 1.01485 1.22246 0.89886 0.96440 0.94073 1.48492 1.31527 1.08349 1.45980 1.17777 0.79847 0.86588 0.79726 1.90832 1.42963 1.67754 1.39006 1.19857 0.93459 0.92976 1.03860 1.21487 0.97796 0.93866 0.97003 1.20835 0.98160 0.94159 0.99397 1.20973 0.90293 1.00521 0.97458 1.18812 0.92769 0.89422 0.98822 1.68067 0.97955 1.39682 1.12662 1.23022 0.96686 0.91327 0.92800 1.22000 0.99382 0.95908 1.01989 1.21739 0.91430 1.01570 0.92816 1.18547 0.93355 0.93948 1.01270 1.22485 1.01993 0.78794 0.97878 0.93536 0.78319 0.96312 0.96458 0.91200 0.91515 0.89706 0.90022 0.91202 0.91142 0.84576 0.84425 0.84257 0.82093 0.84113 0.83485 0.90613 0.89886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.43 13.06 55.49 0.72 -27.70 16 2 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 3 Si 0.91 22.64 29.55 -169.99 -5.02 17.62 16 4 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 7 C -0.24 -6.77 9.99 -15.06 -0.15 -6.93 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.73 -18.69 5.60 -59.91 -0.34 -19.03 16 10 C 0.15 2.97 6.14 -4.04 -0.02 2.94 16 11 C -0.11 -1.68 4.84 -26.73 -0.13 -1.81 16 12 C -0.09 -1.08 3.04 -88.48 -0.27 -1.35 16 13 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 14 C -0.13 -1.09 6.42 -24.89 -0.16 -1.25 16 15 C 0.10 0.79 5.68 -3.06 -0.02 0.77 16 16 N -0.61 -7.00 3.33 -171.70 -0.57 -7.58 16 17 C 0.57 7.49 6.81 -12.46 -0.08 7.41 16 18 O -0.53 -8.74 15.66 5.29 0.08 -8.65 16 19 C -0.10 -1.07 5.41 -104.65 -0.57 -1.64 16 20 C -0.08 -0.67 8.51 -39.14 -0.33 -1.01 16 21 C -0.11 -0.70 9.92 -40.04 -0.40 -1.10 16 22 C -0.07 -0.60 9.96 -39.38 -0.39 -0.99 16 23 C 0.12 1.31 6.60 -84.88 -0.56 0.75 16 24 N -0.48 -5.00 10.34 -10.99 -0.11 -5.11 16 25 C 0.13 1.12 11.15 -17.47 -0.19 0.92 16 26 C -0.17 -1.47 10.03 -39.73 -0.40 -1.87 16 27 C -0.05 -0.55 9.26 -39.31 -0.36 -0.91 16 28 C -0.07 -0.78 5.76 -106.54 -0.61 -1.40 16 29 C 0.11 1.39 5.69 -2.50 -0.01 1.38 16 30 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 31 H 0.38 10.16 7.67 -40.82 -0.31 9.85 16 32 H 0.02 0.38 7.59 -51.93 -0.39 -0.01 16 33 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.07 0.99 8.04 -51.93 -0.42 0.58 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.67 8.04 -51.93 -0.42 0.25 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.45 6.07 -51.93 -0.32 0.14 16 40 H 0.14 0.85 6.07 -52.48 -0.32 0.53 16 41 H 0.14 0.49 8.06 -52.49 -0.42 0.07 16 42 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 43 H 0.16 0.78 8.06 -52.49 -0.42 0.36 16 44 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 45 H 0.15 1.75 6.30 -52.49 -0.33 1.42 16 46 H 0.08 1.01 7.96 -51.93 -0.41 0.59 16 47 H 0.08 1.18 8.05 -51.93 -0.42 0.76 16 LS Contribution 384.44 15.07 5.79 5.79 Total: -1.00 -35.08 384.44 -10.90 -45.98 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -6.69 Total: 5.30 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: -4.77 Total: -6.62 kcal Atomic # 7 Polarization: -59.12 SS G_CDS: -0.30 Total: -59.41 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: 0.08 Total: -8.65 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.08 -10.90 -45.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717093164.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.494 kcal (2) G-P(sol) polarization free energy of solvation -35.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds