Wall clock time and date at job start Tue Mar 31 2020 23:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 120.00223 * 2 1 4 4 H 1.48496 * 109.47353 * 89.99478 * 3 2 1 5 5 H 1.48492 * 109.47195 * 210.00077 * 3 2 1 6 6 H 1.48499 * 109.46551 * 329.99796 * 3 2 1 7 7 C 1.38820 * 120.00014 * 180.27116 * 2 1 3 8 8 H 1.07997 * 119.99893 * 180.02562 * 7 2 1 9 9 N 1.36931 * 119.99643 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99634 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47185 * 180.02562 * 10 9 7 12 12 C 1.52992 * 109.47434 * 180.02562 * 11 10 9 13 13 H 1.09005 * 110.88523 * 54.30094 * 12 11 10 14 14 C 1.55158 * 111.00923 * 178.17785 * 12 11 10 15 15 C 1.54326 * 102.94526 * 153.57519 * 14 12 11 16 16 N 1.47019 * 107.27067 * 337.81414 * 15 14 12 17 17 C 1.34776 * 125.65147 * 178.99268 * 16 15 14 18 18 O 1.21585 * 120.00332 * 175.10592 * 17 16 15 19 19 C 1.47556 * 119.99710 * 355.11004 * 17 16 15 20 20 C 1.38698 * 120.38751 * 48.84441 * 19 17 16 21 21 C 1.38963 * 120.53924 * 179.97438 * 20 19 17 22 22 C 1.36208 * 121.23451 * 0.02562 * 21 20 19 23 23 C 1.40716 * 120.20184 * 359.97438 * 22 21 20 24 24 N 1.33692 * 120.93783 * 179.97438 * 23 22 21 25 25 C 1.31068 * 121.33923 * 180.02562 * 24 23 22 26 26 C 1.39345 * 121.70432 * 0.02562 * 25 24 23 27 27 C 1.36677 * 119.86917 * 359.97438 * 26 25 24 28 28 C 1.40471 * 118.16837 * 359.75222 * 27 26 25 29 29 C 1.47478 * 108.72312 * 358.96850 * 16 15 14 30 30 H 0.96996 * 120.00052 * 359.72668 * 1 2 3 31 31 H 0.97002 * 120.00674 * 0.02562 * 9 7 2 32 32 H 1.09000 * 109.47595 * 300.00318 * 10 9 7 33 33 H 1.08999 * 109.47206 * 60.00726 * 10 9 7 34 34 H 1.09000 * 109.46893 * 300.00478 * 11 10 9 35 35 H 1.09001 * 109.47394 * 59.99988 * 11 10 9 36 36 H 1.09000 * 110.72266 * 271.94832 * 14 12 11 37 37 H 1.09005 * 110.71464 * 35.21887 * 14 12 11 38 38 H 1.08998 * 109.87836 * 97.22876 * 15 14 12 39 39 H 1.08997 * 109.88248 * 218.39127 * 15 14 12 40 40 H 1.08003 * 119.72843 * 359.97438 * 20 19 17 41 41 H 1.07997 * 119.38494 * 180.02562 * 21 20 19 42 42 H 1.07998 * 119.90047 * 179.97438 * 22 21 20 43 43 H 1.07998 * 119.14879 * 179.97438 * 25 24 23 44 44 H 1.07995 * 120.06005 * 180.02562 * 26 25 24 45 45 H 1.07999 * 120.91377 * 180.02562 * 27 26 25 46 46 H 1.08997 * 110.34891 * 265.25494 * 29 16 15 47 47 H 1.09004 * 110.40274 * 142.91550 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 1.4000 5 1 3.5477 1.4401 -0.7000 6 1 1.4477 2.6526 -0.7001 7 6 2.0103 -1.2022 -0.0057 8 1 3.0903 -1.2022 -0.0053 9 7 1.3256 -2.3880 -0.0108 10 6 2.0581 -3.6567 -0.0173 11 6 1.0638 -4.8197 -0.0227 12 6 1.8287 -6.1446 -0.0289 13 1 2.5377 -6.1879 0.7979 14 6 0.8531 -7.3504 0.0115 15 6 1.6638 -8.4741 -0.6678 16 7 2.6925 -7.8298 -1.4975 17 6 3.6185 -8.4700 -2.2385 18 8 4.3662 -7.8359 -2.9576 19 6 3.7248 -9.9404 -2.1772 20 6 2.5929 -10.7316 -2.3058 21 6 2.6895 -12.1168 -2.2491 22 6 3.8897 -12.7342 -2.0662 23 6 5.0646 -11.9718 -1.9308 24 7 6.2503 -12.5624 -1.7503 25 6 7.3495 -11.8600 -1.6228 26 6 7.3380 -10.4673 -1.6682 27 6 6.1580 -9.8020 -1.8503 28 6 4.9842 -10.5603 -1.9922 29 6 2.5433 -6.3669 -1.3853 30 1 -0.4850 0.8400 0.0040 31 1 0.3555 -2.3881 -0.0108 32 1 2.6841 -3.7103 -0.9080 33 1 2.6853 -3.7187 0.8719 34 1 0.4375 -4.7663 0.8677 35 1 0.4368 -4.7576 -0.9122 36 1 0.6117 -7.6169 1.0405 37 1 -0.0529 -7.1325 -0.5542 38 1 2.1365 -9.0998 0.0893 39 1 1.0074 -9.0783 -1.2939 40 1 1.6287 -10.2674 -2.4513 41 1 1.7961 -12.7149 -2.3519 42 1 3.9398 -13.8122 -2.0251 43 1 8.2883 -12.3738 -1.4779 44 1 8.2597 -9.9149 -1.5605 45 1 6.1297 -8.7230 -1.8885 46 1 1.9325 -5.9844 -2.2030 47 1 3.5206 -5.8843 -1.3827 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717093164.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:39 Heat of formation + Delta-G solvation = 11.326444 kcal Electronic energy + Delta-G solvation = -28103.661416 eV Core-core repulsion = 24250.384796 eV Total energy + Delta-G solvation = -3853.276620 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.18823 -40.93791 -38.98754 -37.95281 -36.87227 -34.68303 -34.41450 -32.81061 -31.64354 -31.26713 -30.75060 -28.55022 -26.39964 -25.48960 -24.73282 -24.56562 -23.56682 -22.68711 -21.29114 -20.60753 -19.46227 -19.13959 -18.36549 -18.10749 -17.58944 -17.14070 -16.69361 -16.50947 -15.98553 -15.66091 -15.46929 -15.35911 -15.28923 -15.10664 -14.93348 -14.42874 -14.29858 -14.20590 -13.94203 -13.70935 -13.35673 -13.14413 -13.00676 -12.93175 -12.81778 -12.78581 -12.46768 -12.24609 -12.18630 -12.02189 -11.74083 -11.64323 -11.56092 -11.43329 -11.33161 -10.94518 -10.53459 -9.86404 -9.81874 -9.35036 -9.02270 -7.97904 -5.26701 -0.87136 -0.24878 0.64154 1.45368 1.46302 1.47150 1.55781 1.75185 1.98038 2.53920 3.00993 3.19038 3.27664 3.35437 3.54147 3.58113 3.70507 3.72914 3.76298 3.81732 3.94527 4.08648 4.14601 4.26477 4.30288 4.37374 4.40592 4.47272 4.53849 4.59978 4.70778 4.72518 4.74610 4.81600 4.88751 4.93600 4.97124 5.04442 5.09001 5.13677 5.23442 5.25832 5.28773 5.36614 5.44630 5.47073 5.47606 5.74462 6.25327 6.33038 6.80381 6.88691 7.31284 8.07556 8.31115 9.25504 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019791 B = 0.002045 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.464422 B =13685.313763 C =14687.044743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.076 4.076 3 Si 0.974 3.026 4 H -0.284 1.284 5 H -0.273 1.273 6 H -0.293 1.293 7 C -0.249 4.249 8 H 0.071 0.929 9 N -0.747 5.747 10 C 0.148 3.852 11 C -0.099 4.099 12 C -0.085 4.085 13 H 0.087 0.913 14 C -0.118 4.118 15 C 0.093 3.907 16 N -0.608 5.608 17 C 0.570 3.430 18 O -0.579 6.579 19 C -0.126 4.126 20 C -0.067 4.067 21 C -0.095 4.095 22 C -0.075 4.075 23 C 0.101 3.899 24 N -0.491 5.491 25 C 0.131 3.869 26 C -0.164 4.164 27 C -0.081 4.081 28 C -0.086 4.086 29 C 0.109 3.891 30 H 0.252 0.748 31 H 0.375 0.625 32 H 0.012 0.988 33 H 0.017 0.983 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.107 0.893 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.098 0.902 40 H 0.158 0.842 41 H 0.179 0.821 42 H 0.159 0.841 43 H 0.197 0.803 44 H 0.165 0.835 45 H 0.126 0.874 46 H 0.066 0.934 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.828 -32.614 -1.147 33.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.268 4.268 3 Si 0.802 3.198 4 H -0.211 1.211 5 H -0.198 1.198 6 H -0.219 1.219 7 C -0.381 4.381 8 H 0.089 0.911 9 N -0.390 5.390 10 C 0.021 3.979 11 C -0.137 4.137 12 C -0.105 4.105 13 H 0.105 0.895 14 C -0.156 4.156 15 C -0.028 4.028 16 N -0.340 5.340 17 C 0.359 3.641 18 O -0.460 6.460 19 C -0.130 4.130 20 C -0.085 4.085 21 C -0.114 4.114 22 C -0.094 4.094 23 C -0.020 4.020 24 N -0.200 5.200 25 C -0.041 4.041 26 C -0.184 4.184 27 C -0.107 4.107 28 C -0.089 4.089 29 C -0.014 4.014 30 H 0.061 0.939 31 H 0.207 0.793 32 H 0.030 0.970 33 H 0.035 0.965 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.126 0.874 37 H 0.108 0.892 38 H 0.101 0.899 39 H 0.116 0.884 40 H 0.176 0.824 41 H 0.196 0.804 42 H 0.177 0.823 43 H 0.214 0.786 44 H 0.183 0.817 45 H 0.144 0.856 46 H 0.085 0.915 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.337 -33.162 -1.549 33.797 hybrid contribution 0.347 2.640 -0.245 2.674 sum 6.685 -30.522 -1.795 31.297 Atomic orbital electron populations 1.69802 1.06483 1.26170 1.59342 1.25585 0.96507 1.01117 1.03599 0.85139 0.77626 0.79431 0.77574 1.21104 1.19771 1.21899 1.19619 0.91402 0.85601 1.41469 0.91083 1.42587 1.05731 1.01288 1.89421 1.20866 0.94472 0.85326 0.97199 1.21518 0.97511 0.91895 1.02804 1.22205 0.97742 0.94725 0.95815 0.89456 1.22756 0.97630 0.92037 1.03152 1.22510 0.89371 0.96538 0.94394 1.48556 1.31880 1.07812 1.45777 1.18206 0.79223 0.87615 0.79013 1.90788 1.44873 1.69013 1.41284 1.19752 0.94605 0.91620 1.07016 1.21816 0.97569 0.94504 0.94652 1.21244 0.99082 0.93614 0.97503 1.21322 0.89957 1.01459 0.96636 1.19177 0.93862 0.89271 0.99654 1.68121 0.98477 1.40160 1.13199 1.23594 0.97523 0.91277 0.91751 1.22300 0.99435 0.96399 1.00258 1.21732 0.92916 1.00816 0.95200 1.18728 0.93606 0.94645 1.01921 1.22356 1.00588 0.79927 0.98486 0.93877 0.79251 0.96992 0.96467 0.90593 0.91665 0.87412 0.89190 0.89949 0.88401 0.82419 0.80357 0.82345 0.78640 0.81708 0.85643 0.91538 0.92509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.66 13.06 21.65 0.28 -59.38 16 2 C -0.08 -4.43 5.50 84.86 0.47 -3.97 16 3 Si 0.97 46.94 29.55 68.60 2.03 48.97 16 4 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 5 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 6 H -0.29 -14.07 7.11 99.48 0.71 -13.37 16 7 C -0.25 -14.32 9.99 84.04 0.84 -13.48 16 8 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 9 N -0.75 -38.74 5.60 -343.45 -1.92 -40.67 16 10 C 0.15 5.91 6.14 86.38 0.53 6.44 16 11 C -0.10 -2.87 4.84 30.59 0.15 -2.72 16 12 C -0.09 -1.88 3.04 -9.40 -0.03 -1.91 16 13 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 14 C -0.12 -1.66 6.42 31.78 0.20 -1.46 16 15 C 0.09 1.29 5.68 86.73 0.49 1.78 16 16 N -0.61 -13.86 3.33 -815.40 -2.71 -16.58 16 17 C 0.57 15.49 6.81 86.70 0.59 16.08 16 18 O -0.58 -20.75 15.66 -3.98 -0.06 -20.81 16 19 C -0.13 -2.75 5.41 -19.88 -0.11 -2.86 16 20 C -0.07 -0.92 8.51 22.55 0.19 -0.72 16 21 C -0.10 -0.92 9.92 21.97 0.22 -0.71 16 22 C -0.08 -1.04 9.96 22.40 0.22 -0.82 16 23 C 0.10 2.07 6.60 40.27 0.27 2.34 16 24 N -0.49 -9.81 10.34 -188.68 -1.95 -11.76 16 25 C 0.13 2.04 11.15 85.07 0.95 2.99 16 26 C -0.16 -2.80 10.03 22.17 0.22 -2.57 16 27 C -0.08 -1.89 9.26 22.45 0.21 -1.69 16 28 C -0.09 -2.01 5.76 -21.10 -0.12 -2.13 16 29 C 0.11 2.85 5.69 86.84 0.49 3.34 16 30 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 31 H 0.38 20.31 7.67 -92.71 -0.71 19.60 16 32 H 0.01 0.50 7.59 -2.39 -0.02 0.48 16 33 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.06 1.92 8.04 -2.39 -0.02 1.90 16 36 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.09 1.18 8.04 -2.38 -0.02 1.16 16 38 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.10 0.85 6.07 -2.39 -0.01 0.84 16 40 H 0.16 1.37 6.07 -2.91 -0.02 1.36 16 41 H 0.18 0.29 8.06 -2.91 -0.02 0.27 16 42 H 0.16 1.51 8.06 -2.91 -0.02 1.49 16 43 H 0.20 1.45 8.06 -2.91 -0.02 1.43 16 44 H 0.17 1.80 8.06 -2.91 -0.02 1.78 16 45 H 0.13 3.40 6.30 -2.91 -0.02 3.38 16 46 H 0.07 1.84 7.96 -2.39 -0.02 1.82 16 47 H 0.06 1.76 8.05 -2.38 -0.02 1.74 16 Total: -1.00 -79.70 384.44 1.73 -77.98 By element: Atomic # 1 Polarization: 24.04 SS G_CDS: 0.28 Total: 24.32 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: 5.79 Total: -2.07 kcal Atomic # 7 Polarization: -122.07 SS G_CDS: -6.31 Total: -128.38 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: -0.06 Total: -20.81 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 2.03 Total: 48.97 kcal Total: -79.70 1.73 -77.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717093164.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.303 kcal (2) G-P(sol) polarization free energy of solvation -79.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds