Wall clock time and date at job start Tue Mar 31 2020 22:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86793 * 120.00195 * 2 1 4 4 H 1.48500 * 109.47642 * 270.00435 * 3 2 1 5 5 H 1.48504 * 109.47058 * 30.00265 * 3 2 1 6 6 H 1.48498 * 109.47635 * 149.99982 * 3 2 1 7 7 C 1.38818 * 120.00022 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99653 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99852 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99834 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47185 * 180.02562 * 10 9 7 12 12 H 1.08997 * 110.43663 * 52.45805 * 11 10 9 13 13 C 1.54892 * 110.59577 * 289.84014 * 11 10 9 14 14 C 1.54967 * 102.77809 * 203.34941 * 13 11 10 15 15 C 1.54269 * 104.15871 * 37.88696 * 14 13 11 16 16 H 1.09001 * 110.03202 * 95.75605 * 15 14 13 17 17 N 1.46506 * 110.03194 * 217.13447 * 15 14 13 18 18 C 1.34775 * 120.00102 * 272.90830 * 17 15 14 19 19 O 1.21581 * 120.00132 * 0.02562 * 18 17 15 20 20 C 1.47566 * 119.99869 * 180.02562 * 18 17 15 21 21 C 1.38713 * 120.43300 * 354.12892 * 20 18 17 22 22 C 1.38999 * 120.74665 * 179.67694 * 21 20 18 23 23 C 1.36336 * 121.19387 * 0.62360 * 22 21 20 24 24 C 1.40356 * 119.92852 * 359.67783 * 23 22 21 25 25 C 1.40688 * 122.09899 * 180.02562 * 24 23 22 26 26 C 1.36265 * 118.66176 * 180.02562 * 25 24 23 27 27 N 1.32508 * 121.84131 * 359.95952 * 26 25 24 28 28 C 1.31311 * 122.71996 * 0.02562 * 27 26 25 29 29 C 1.40128 * 119.92293 * 359.97438 * 28 27 26 30 30 C 1.53874 * 106.64127 * 336.44522 * 15 14 13 31 31 H 0.96996 * 120.00054 * 359.97438 * 1 2 3 32 32 H 0.96995 * 120.00158 * 0.02562 * 9 7 2 33 33 H 1.08998 * 109.47003 * 60.00404 * 10 9 7 34 34 H 1.09008 * 109.47111 * 300.00126 * 10 9 7 35 35 H 1.08997 * 110.76024 * 321.63487 * 13 11 10 36 36 H 1.09004 * 110.75715 * 84.82886 * 13 11 10 37 37 H 1.08999 * 110.48102 * 279.23927 * 14 13 11 38 38 H 1.09000 * 110.53356 * 156.56354 * 14 13 11 39 39 H 0.96997 * 119.99212 * 92.91239 * 17 15 14 40 40 H 1.08003 * 119.62232 * 359.97131 * 21 20 18 41 41 H 1.08004 * 119.39860 * 180.30744 * 22 21 20 42 42 H 1.08002 * 120.03756 * 179.70533 * 23 22 21 43 43 H 1.07994 * 120.66811 * 359.97438 * 25 24 23 44 44 H 1.07998 * 119.07685 * 179.97438 * 26 25 24 45 45 H 1.08003 * 120.03554 * 179.97438 * 28 27 26 46 46 H 1.09000 * 110.03023 * 119.25768 * 30 15 14 47 47 H 1.08998 * 110.03253 * 240.64217 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0639 -4.8197 -0.0012 12 1 0.3438 -4.7044 -0.8113 13 6 0.3352 -4.9144 1.3624 14 6 -0.1157 -6.3963 1.4078 15 6 1.0572 -7.1675 0.7681 16 1 1.7228 -7.5458 1.5440 17 7 0.5466 -8.2779 -0.0398 18 6 0.3042 -9.4730 0.5340 19 8 0.5089 -9.6296 1.7222 20 6 -0.2096 -10.5916 -0.2799 21 6 -0.5610 -10.3916 -1.6068 22 6 -1.0394 -11.4420 -2.3813 23 6 -1.1893 -12.6927 -1.8597 24 6 -0.8514 -12.9377 -0.5196 25 6 -0.9873 -14.2101 0.0650 26 6 -0.6387 -14.3691 1.3727 27 7 -0.1779 -13.3625 2.1007 28 6 -0.0255 -12.1501 1.6198 29 6 -0.3554 -11.8812 0.2847 30 6 1.8073 -6.1656 -0.1272 31 1 -0.4850 0.8400 0.0004 32 1 0.3556 -2.3881 -0.0005 33 1 2.6847 -3.7145 0.8895 34 1 2.6848 -3.7145 -0.8906 35 1 1.0192 -4.6942 2.1820 36 1 -0.5246 -4.2449 1.3882 37 1 -1.0266 -6.5358 0.8256 38 1 -0.2672 -6.7184 2.4381 39 1 0.3830 -8.1528 -0.9877 40 1 -0.4573 -9.4096 -2.0443 41 1 -1.3019 -11.2630 -3.4135 42 1 -1.5671 -13.4943 -2.4771 43 1 -1.3611 -15.0438 -0.5107 44 1 -0.7407 -15.3430 1.8284 45 1 0.3536 -11.3612 2.2525 46 1 2.8365 -6.0570 0.2149 47 1 1.7920 -6.5059 -1.1625 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725670821.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:03 Heat of formation + Delta-G solvation = 25.776929 kcal Electronic energy + Delta-G solvation = -27847.345664 eV Core-core repulsion = 23994.695664 eV Total energy + Delta-G solvation = -3852.650000 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.46514 -39.94521 -38.14842 -37.54681 -34.96237 -33.67551 -33.18309 -31.59003 -31.18238 -30.10624 -28.82006 -27.71076 -25.10253 -24.44332 -23.88464 -23.49019 -22.19353 -21.07650 -20.45342 -19.69757 -18.46164 -18.11597 -17.13882 -17.03486 -16.57159 -16.35747 -15.49498 -15.31753 -15.07723 -14.90203 -14.54247 -14.23141 -14.14986 -14.00396 -13.64024 -13.40558 -13.12332 -13.03843 -12.81763 -12.51583 -12.49723 -12.21388 -12.01295 -11.87313 -11.33840 -11.10146 -10.85875 -10.74115 -10.59663 -10.55245 -10.30500 -10.25890 -10.08432 -9.96014 -9.67970 -9.66310 -9.58384 -9.25813 -8.85975 -8.50953 -6.90431 -5.75994 -3.04074 -0.31507 0.46252 1.24332 2.33278 2.81440 2.92348 3.43717 3.48993 3.50675 3.73233 4.05991 4.12726 4.23598 4.34087 4.42608 4.50045 4.57341 4.63586 4.68232 4.75537 4.86851 5.00557 5.12626 5.28259 5.30682 5.47307 5.47778 5.52400 5.56128 5.61090 5.63917 5.66518 5.69884 5.85154 5.86550 5.87827 6.06045 6.10527 6.20486 6.24342 6.28889 6.38823 6.48374 6.54339 6.58979 6.79470 6.92867 7.20668 7.70379 7.70644 7.91856 8.43333 9.54451 10.13309 10.47839 11.46993 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.030436 B = 0.001808 C = 0.001752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.729994 B =15483.662462 C =15978.054586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.732 5.732 10 C 0.160 3.840 11 C -0.097 4.097 12 H 0.075 0.925 13 C -0.111 4.111 14 C -0.133 4.133 15 C 0.140 3.860 16 H 0.094 0.906 17 N -0.711 5.711 18 C 0.559 3.441 19 O -0.530 6.530 20 C -0.100 4.100 21 C -0.078 4.078 22 C -0.107 4.107 23 C -0.087 4.087 24 C -0.031 4.031 25 C -0.164 4.164 26 C 0.078 3.922 27 N -0.489 5.489 28 C 0.145 3.855 29 C -0.079 4.079 30 C -0.123 4.123 31 H 0.255 0.745 32 H 0.384 0.616 33 H 0.020 0.980 34 H 0.017 0.983 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.400 0.600 40 H 0.134 0.866 41 H 0.136 0.864 42 H 0.136 0.864 43 H 0.139 0.861 44 H 0.153 0.847 45 H 0.201 0.799 46 H 0.078 0.922 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.182 -29.946 -5.009 30.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.032 3.968 11 C -0.116 4.116 12 H 0.093 0.907 13 C -0.149 4.149 14 C -0.172 4.172 15 C 0.036 3.964 16 H 0.112 0.888 17 N -0.362 5.362 18 C 0.347 3.653 19 O -0.409 6.409 20 C -0.105 4.105 21 C -0.097 4.097 22 C -0.126 4.126 23 C -0.105 4.105 24 C -0.036 4.036 25 C -0.184 4.184 26 C -0.065 4.065 27 N -0.197 5.197 28 C -0.024 4.024 29 C -0.082 4.082 30 C -0.161 4.161 31 H 0.064 0.936 32 H 0.217 0.783 33 H 0.038 0.962 34 H 0.034 0.966 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.236 0.764 40 H 0.152 0.848 41 H 0.154 0.846 42 H 0.154 0.846 43 H 0.156 0.844 44 H 0.170 0.830 45 H 0.217 0.783 46 H 0.097 0.903 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.697 -30.222 -3.287 30.520 hybrid contribution -0.281 1.101 -1.599 1.962 sum -2.977 -29.121 -4.886 29.678 Atomic orbital electron populations 1.69655 1.05093 1.25596 1.57939 1.24736 0.95530 0.97676 1.03159 0.86192 0.78661 0.83884 0.77473 1.21786 1.21790 1.20790 1.19240 0.91030 0.84254 1.42440 0.91245 1.42342 1.05858 0.99949 1.89421 1.20696 0.93069 0.85344 0.97675 1.22150 0.97813 0.93671 0.97926 0.90680 1.22482 1.00664 0.94356 0.97391 1.22809 0.97507 0.95941 1.00947 1.21824 0.95757 0.85321 0.93490 0.88813 1.46199 1.66077 1.10929 1.13000 1.18085 0.77727 0.82407 0.87103 1.90579 1.52744 1.82236 1.15368 1.19936 1.02795 0.93265 0.94491 1.21474 0.95963 0.99751 0.92551 1.20929 0.98629 0.92533 1.00535 1.21188 0.97920 0.97729 0.93638 1.18178 0.97718 0.93484 0.94206 1.21888 1.02869 0.96557 0.97039 1.22350 0.94782 0.98168 0.91200 1.67686 1.12766 1.00428 1.38826 1.24636 0.91087 0.94354 0.92361 1.18856 1.00656 0.92662 0.96038 1.22441 1.00011 0.94584 0.99087 0.93561 0.78282 0.96220 0.96565 0.91112 0.90829 0.91475 0.91266 0.76436 0.84820 0.84622 0.84636 0.84367 0.83004 0.78329 0.90320 0.91393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.13 13.06 55.49 0.72 -27.41 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 4 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.73 -18.21 5.49 -59.91 -0.33 -18.54 16 10 C 0.16 3.09 5.55 -4.04 -0.02 3.07 16 11 C -0.10 -1.43 2.88 -88.96 -0.26 -1.69 16 12 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 13 C -0.11 -1.63 6.20 -24.69 -0.15 -1.78 16 14 C -0.13 -1.65 6.54 -25.03 -0.16 -1.81 16 15 C 0.14 1.56 3.23 -66.81 -0.22 1.34 16 16 H 0.09 1.15 7.59 -51.93 -0.39 0.75 16 17 N -0.71 -6.69 4.99 -53.75 -0.27 -6.96 16 18 C 0.56 6.22 7.73 -12.46 -0.10 6.12 16 19 O -0.53 -7.40 13.14 5.29 0.07 -7.33 16 20 C -0.10 -0.96 5.90 -104.66 -0.62 -1.58 16 21 C -0.08 -0.53 9.51 -39.12 -0.37 -0.90 16 22 C -0.11 -0.60 9.93 -39.98 -0.40 -1.00 16 23 C -0.09 -0.54 9.79 -39.47 -0.39 -0.92 16 24 C -0.03 -0.27 5.75 -106.83 -0.61 -0.88 16 25 C -0.16 -1.25 9.88 -39.37 -0.39 -1.64 16 26 C 0.08 0.71 11.07 -17.97 -0.20 0.51 16 27 N -0.49 -5.86 10.30 -13.22 -0.14 -6.00 16 28 C 0.15 1.77 10.49 -17.07 -0.18 1.59 16 29 C -0.08 -0.85 5.76 -106.59 -0.61 -1.47 16 30 C -0.12 -1.39 6.14 -25.61 -0.16 -1.55 16 31 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.38 10.01 7.64 -40.82 -0.31 9.69 16 33 H 0.02 0.39 8.03 -51.93 -0.42 -0.02 16 34 H 0.02 0.32 8.14 -51.92 -0.42 -0.10 16 35 H 0.07 1.09 7.97 -51.93 -0.41 0.68 16 36 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.07 0.80 8.05 -51.93 -0.42 0.39 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.40 2.74 6.38 -40.82 -0.26 2.48 16 40 H 0.13 0.57 6.42 -52.48 -0.34 0.24 16 41 H 0.14 0.40 8.06 -52.48 -0.42 -0.03 16 42 H 0.14 0.47 8.06 -52.49 -0.42 0.05 16 43 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 44 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 45 H 0.20 2.61 4.97 -52.49 -0.26 2.35 16 46 H 0.08 0.90 7.84 -51.93 -0.41 0.49 16 47 H 0.07 0.65 7.61 -51.93 -0.40 0.26 16 LS Contribution 383.12 15.07 5.77 5.77 Total: -1.00 -33.76 383.12 -10.81 -44.57 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -6.54 Total: 8.46 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: -5.08 Total: -9.92 kcal Atomic # 7 Polarization: -58.90 SS G_CDS: -0.01 Total: -58.91 kcal Atomic # 8 Polarization: -7.40 SS G_CDS: 0.07 Total: -7.33 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.76 -10.81 -44.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725670821.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.345 kcal (2) G-P(sol) polarization free energy of solvation -33.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds