Wall clock time and date at job start Tue Mar 31 2020 22:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86804 * 119.99812 * 2 1 4 4 H 1.48496 * 109.47099 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47168 * 300.00416 * 3 2 1 6 6 H 1.48498 * 109.46751 * 59.99956 * 3 2 1 7 7 C 1.38807 * 120.00074 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00170 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00125 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00379 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47303 * 185.32842 * 10 9 7 12 12 H 1.08996 * 109.69748 * 45.05992 * 11 10 9 13 13 C 1.53624 * 109.66149 * 165.64467 * 11 10 9 14 14 C 1.53040 * 109.23905 * 174.55092 * 13 11 10 15 15 C 1.53041 * 109.54106 * 298.51116 * 14 13 11 16 16 C 1.53193 * 109.30596 * 61.36696 * 15 14 13 17 17 N 1.46918 * 108.77696 * 305.36065 * 16 15 14 18 18 C 1.34782 * 120.63430 * 233.58452 * 17 16 15 19 19 O 1.21542 * 119.99924 * 183.52361 * 18 17 16 20 20 C 1.47882 * 119.99505 * 3.52935 * 18 17 16 21 21 C 1.40572 * 119.71140 * 311.78327 * 20 18 17 22 22 C 1.35818 * 120.74212 * 180.02562 * 21 20 18 23 23 C 1.40546 * 119.98258 * 359.97438 * 22 21 20 24 24 C 1.40814 * 121.14695 * 180.02562 * 23 22 21 25 25 C 1.36557 * 118.20282 * 179.97438 * 24 23 22 26 26 C 1.39417 * 119.93926 * 359.97438 * 25 24 23 27 27 N 1.31016 * 121.71177 * 359.71845 * 26 25 24 28 28 C 1.33749 * 121.34664 * 0.56942 * 27 26 25 29 29 C 1.38411 * 119.70521 * 131.80669 * 20 18 17 30 30 H 0.96998 * 120.00114 * 359.97438 * 1 2 3 31 31 H 0.97007 * 119.99983 * 359.97438 * 9 7 2 32 32 H 1.09008 * 109.46837 * 65.33156 * 10 9 7 33 33 H 1.08995 * 109.46884 * 305.33343 * 10 9 7 34 34 H 1.09002 * 109.63015 * 54.56320 * 13 11 10 35 35 H 1.08995 * 109.46319 * 294.43731 * 13 11 10 36 36 H 1.09002 * 109.46139 * 178.49404 * 14 13 11 37 37 H 1.08993 * 109.46002 * 58.53701 * 14 13 11 38 38 H 1.08999 * 109.50015 * 301.41468 * 15 14 13 39 39 H 1.09000 * 109.50094 * 181.31444 * 15 14 13 40 40 H 1.09001 * 109.58311 * 185.57638 * 16 15 14 41 41 H 1.09000 * 109.70587 * 65.22613 * 16 15 14 42 42 H 1.07997 * 119.62465 * 0.02710 * 21 20 18 43 43 H 1.07991 * 120.00846 * 179.97438 * 22 21 20 44 44 H 1.08007 * 120.89914 * 359.97438 * 24 23 22 45 45 H 1.07994 * 120.02999 * 179.97438 * 25 24 23 46 46 H 1.08000 * 119.14395 * 180.02562 * 26 25 24 47 47 H 1.07996 * 120.23692 * 359.97058 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6568 0.0005 11 6 1.0693 -4.8166 -0.1334 12 1 0.3403 -4.5898 -0.9113 13 6 1.8276 -6.1035 -0.4924 14 6 0.8508 -7.2816 -0.4905 15 6 0.2537 -7.4491 0.9086 16 6 -0.5181 -6.1805 1.2852 17 7 0.3768 -5.0237 1.1457 18 6 0.5545 -4.1654 2.1696 19 8 1.2468 -3.1775 2.0213 20 6 -0.0927 -4.4260 3.4735 21 6 -1.4579 -4.7579 3.5198 22 6 -2.0735 -5.0009 4.7058 23 6 -1.3443 -4.9222 5.9047 24 6 -1.9577 -5.1697 7.1478 25 6 -1.1924 -5.0771 8.2749 26 6 0.1580 -4.7454 8.1738 27 7 0.7272 -4.5214 7.0152 28 6 0.0330 -4.5903 5.8740 29 6 0.6511 -4.3405 4.6377 30 1 -0.4850 0.8400 0.0004 31 1 0.3556 -2.3881 0.0005 32 1 2.6113 -3.7570 0.9345 33 1 2.7545 -3.6743 -0.8378 34 1 2.6141 -6.2818 0.2409 35 1 2.2705 -5.9997 -1.4829 36 1 1.3798 -8.1924 -0.7709 37 1 0.0511 -7.0914 -1.2062 38 1 1.0550 -7.6148 1.6288 39 1 -0.4242 -8.3027 0.9151 40 1 -0.8614 -6.2545 2.3171 41 1 -1.3753 -6.0615 0.6226 42 1 -2.0235 -4.8204 2.6019 43 1 -3.1230 -5.2545 4.7275 44 1 -3.0052 -5.4260 7.2082 45 1 -1.6327 -5.2605 9.2438 46 1 0.7514 -4.6761 9.0735 47 1 1.6996 -4.0851 4.5956 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731552082.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:42 Heat of formation + Delta-G solvation = 51.990813 kcal Electronic energy + Delta-G solvation = -29864.092037 eV Core-core repulsion = 26012.578757 eV Total energy + Delta-G solvation = -3851.513281 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.08761 -41.23855 -38.44829 -37.85619 -36.27044 -34.47813 -33.92845 -33.64748 -31.70334 -31.29252 -31.05657 -27.80755 -26.27495 -25.53865 -24.78226 -24.30482 -23.36554 -22.74835 -21.77763 -20.57329 -19.47679 -18.83138 -18.06747 -17.81867 -17.10558 -16.83069 -16.71334 -16.11806 -15.67458 -15.46936 -15.41520 -15.27807 -15.20052 -15.10480 -14.94367 -14.37630 -14.31618 -14.02139 -13.90269 -13.82571 -13.49382 -13.17253 -12.94928 -12.86957 -12.82597 -12.60925 -12.45137 -12.12975 -12.06808 -11.87771 -11.73336 -11.55438 -11.46998 -11.35886 -10.91810 -10.48924 -10.12123 -9.68590 -9.48688 -9.29670 -8.70437 -7.86875 -5.06295 -0.67419 -0.31393 0.93103 1.39994 1.43246 1.52358 1.61203 1.97886 2.20131 2.58995 3.06435 3.27483 3.45986 3.53485 3.58326 3.80927 3.82986 3.83988 3.98157 4.02410 4.05745 4.09689 4.13073 4.31858 4.34063 4.40380 4.47625 4.57752 4.60741 4.72148 4.75309 4.83883 4.89476 4.93074 4.98362 5.04975 5.08866 5.11106 5.13043 5.23457 5.24945 5.29304 5.32419 5.48272 5.51441 5.52863 5.78493 5.82614 6.34997 6.53905 6.93850 7.38454 7.43339 8.21287 8.44637 9.38357 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009032 B = 0.004163 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3099.395468 B = 6724.204102 C = 8936.675497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.085 4.085 3 Si 0.966 3.034 4 H -0.272 1.272 5 H -0.288 1.288 6 H -0.300 1.300 7 C -0.212 4.212 8 H 0.060 0.940 9 N -0.705 5.705 10 C 0.161 3.839 11 C 0.147 3.853 12 H 0.067 0.933 13 C -0.119 4.119 14 C -0.112 4.112 15 C -0.128 4.128 16 C 0.091 3.909 17 N -0.602 5.602 18 C 0.515 3.485 19 O -0.507 6.507 20 C -0.100 4.100 21 C -0.106 4.106 22 C -0.078 4.078 23 C -0.108 4.108 24 C -0.053 4.053 25 C -0.167 4.167 26 C 0.126 3.874 27 N -0.519 5.519 28 C 0.102 3.898 29 C -0.073 4.073 30 H 0.245 0.755 31 H 0.367 0.633 32 H 0.017 0.983 33 H 0.016 0.984 34 H 0.057 0.943 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.055 0.945 39 H 0.104 0.896 40 H 0.100 0.900 41 H 0.083 0.917 42 H 0.150 0.850 43 H 0.180 0.820 44 H 0.182 0.818 45 H 0.181 0.819 46 H 0.187 0.813 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.969 -23.458 12.982 28.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.627 5.627 2 C -0.276 4.276 3 Si 0.797 3.203 4 H -0.196 1.196 5 H -0.215 1.215 6 H -0.228 1.228 7 C -0.345 4.345 8 H 0.078 0.922 9 N -0.346 5.346 10 C 0.034 3.966 11 C 0.044 3.956 12 H 0.085 0.915 13 C -0.158 4.158 14 C -0.150 4.150 15 C -0.166 4.166 16 C -0.030 4.030 17 N -0.337 5.337 18 C 0.301 3.699 19 O -0.381 6.381 20 C -0.105 4.105 21 C -0.124 4.124 22 C -0.096 4.096 23 C -0.110 4.110 24 C -0.078 4.078 25 C -0.186 4.186 26 C -0.047 4.047 27 N -0.228 5.228 28 C -0.018 4.018 29 C -0.093 4.093 30 H 0.054 0.946 31 H 0.198 0.802 32 H 0.034 0.966 33 H 0.034 0.966 34 H 0.076 0.924 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.074 0.926 39 H 0.123 0.877 40 H 0.118 0.882 41 H 0.101 0.899 42 H 0.167 0.833 43 H 0.198 0.802 44 H 0.200 0.800 45 H 0.198 0.802 46 H 0.203 0.797 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -7.485 -22.614 12.708 26.998 hybrid contribution -0.116 1.499 -0.047 1.504 sum -7.600 -21.115 12.660 25.766 Atomic orbital electron populations 1.69828 1.06345 1.25096 1.61403 1.25376 0.96395 1.00450 1.05337 0.85143 0.78047 0.80554 0.76589 1.19632 1.21470 1.22801 1.19527 0.90779 0.85928 1.38234 0.92175 1.42254 1.04673 1.00523 1.87107 1.20939 0.93956 0.85156 0.96519 1.21496 0.93946 0.95401 0.84760 0.91540 1.21946 0.98364 0.93304 1.02197 1.21506 0.98682 0.97486 0.97302 1.21910 1.00408 0.97215 0.97058 1.22339 0.92522 0.84343 1.03819 1.47938 1.46822 1.26953 1.11983 1.18913 0.82903 0.83253 0.84801 1.91232 1.37908 1.27175 1.81771 1.20025 0.96030 1.01747 0.92655 1.21175 0.92076 0.98668 1.00497 1.21317 1.01315 0.97543 0.89475 1.19232 0.93385 1.01486 0.96942 1.21996 1.02072 0.93894 0.89873 1.22387 0.94471 1.00150 1.01601 1.23679 0.94413 0.91328 0.95287 1.67997 1.40082 1.15600 0.99096 1.18785 0.91543 0.99605 0.91878 1.20937 0.99681 0.98290 0.90424 0.94629 0.80167 0.96575 0.96596 0.92384 0.89873 0.89655 0.90883 0.92628 0.87737 0.88180 0.89903 0.83282 0.80224 0.80037 0.80152 0.79656 0.87372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -65.50 13.06 21.65 0.28 -65.22 16 2 C -0.08 -5.45 5.50 84.86 0.47 -4.98 16 3 Si 0.97 51.78 29.55 68.60 2.03 53.81 16 4 H -0.27 -13.86 7.11 99.48 0.71 -13.16 16 5 H -0.29 -14.92 7.11 99.48 0.71 -14.21 16 6 H -0.30 -16.20 7.11 99.48 0.71 -15.50 16 7 C -0.21 -13.50 9.80 84.03 0.82 -12.68 16 8 H 0.06 3.79 7.83 -2.91 -0.02 3.76 16 9 N -0.71 -40.87 3.31 -343.46 -1.14 -42.01 16 10 C 0.16 7.55 4.91 86.38 0.42 7.98 16 11 C 0.15 5.15 2.92 45.12 0.13 5.29 16 12 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 13 C -0.12 -3.03 5.35 30.82 0.16 -2.87 16 14 C -0.11 -1.99 5.88 30.62 0.18 -1.81 16 15 C -0.13 -2.16 6.08 30.67 0.19 -1.97 16 16 C 0.09 1.96 5.24 86.36 0.45 2.41 16 17 N -0.60 -19.86 2.97 -797.60 -2.37 -22.22 16 18 C 0.51 21.28 6.94 86.80 0.60 21.88 16 19 O -0.51 -27.39 10.92 -3.85 -0.04 -27.43 16 20 C -0.10 -3.44 5.08 -20.11 -0.10 -3.54 16 21 C -0.11 -2.68 7.22 22.28 0.16 -2.52 16 22 C -0.08 -1.51 9.74 22.27 0.22 -1.29 16 23 C -0.11 -2.43 5.75 -21.23 -0.12 -2.55 16 24 C -0.05 -0.73 9.88 22.51 0.22 -0.51 16 25 C -0.17 -2.08 10.03 22.16 0.22 -1.86 16 26 C 0.13 2.37 11.15 85.10 0.95 3.32 16 27 N -0.52 -15.23 10.34 -188.65 -1.95 -17.18 16 28 C 0.10 3.13 6.60 40.25 0.27 3.39 16 29 C -0.07 -2.67 9.66 22.85 0.22 -2.45 16 30 H 0.24 15.90 8.31 -92.71 -0.77 15.13 16 31 H 0.37 22.59 7.43 -92.70 -0.69 21.90 16 32 H 0.02 0.86 6.12 -2.38 -0.01 0.85 16 33 H 0.02 0.75 8.07 -2.39 -0.02 0.73 16 34 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.10 1.98 4.42 -2.39 -0.01 1.97 16 41 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.15 3.23 6.82 -2.91 -0.02 3.21 16 43 H 0.18 1.74 8.06 -2.92 -0.02 1.71 16 44 H 0.18 0.93 8.06 -2.91 -0.02 0.90 16 45 H 0.18 0.67 8.06 -2.91 -0.02 0.64 16 46 H 0.19 2.18 8.06 -2.91 -0.02 2.16 16 47 H 0.11 4.43 8.06 -2.91 -0.02 4.41 16 Total: -1.00 -91.18 373.59 2.58 -88.59 By element: Atomic # 1 Polarization: 26.11 SS G_CDS: 0.30 Total: 26.41 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: 5.47 Total: 5.25 kcal Atomic # 7 Polarization: -141.46 SS G_CDS: -5.17 Total: -146.63 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: -0.04 Total: -27.43 kcal Atomic # 14 Polarization: 51.78 SS G_CDS: 2.03 Total: 53.81 kcal Total: -91.18 2.58 -88.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731552082.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.583 kcal (2) G-P(sol) polarization free energy of solvation -91.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds