Wall clock time and date at job start Tue Mar 31 2020 23:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86803 * 119.99762 * 2 1 4 4 H 1.48502 * 109.47182 * 264.67504 * 3 2 1 5 5 H 1.48499 * 109.47207 * 24.67290 * 3 2 1 6 6 H 1.48504 * 109.47392 * 144.67261 * 3 2 1 7 7 C 1.38813 * 120.00650 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99394 * 336.25137 * 7 2 1 9 9 N 1.36934 * 120.00103 * 156.24643 * 7 2 1 10 10 C 1.47423 * 125.64574 * 162.05279 * 9 7 2 11 11 C 1.54907 * 104.83041 * 155.90417 * 10 9 7 12 12 C 1.55154 * 101.58608 * 37.00788 * 11 10 9 13 13 H 1.09002 * 110.71799 * 83.03490 * 12 11 10 14 14 C 1.52992 * 110.72522 * 206.13548 * 12 11 10 15 15 C 1.52998 * 109.47532 * 182.55969 * 14 12 11 16 16 N 1.46501 * 109.47768 * 179.97438 * 15 14 12 17 17 C 1.34765 * 120.00627 * 179.97438 * 16 15 14 18 18 O 1.21607 * 119.99748 * 0.02562 * 17 16 15 19 19 C 1.47442 * 120.00691 * 179.97438 * 17 16 15 20 20 C 1.38953 * 121.16383 * 359.97438 * 19 17 16 21 21 N 1.32206 * 121.31233 * 180.02562 * 20 19 17 22 22 C 1.31196 * 123.69581 * 359.71715 * 21 20 19 23 23 C 1.40380 * 120.91975 * 0.54311 * 22 21 20 24 24 C 1.40390 * 122.15485 * 179.76224 * 23 22 21 25 25 C 1.36231 * 119.49258 * 179.72432 * 24 23 22 26 26 C 1.39293 * 121.10318 * 0.02562 * 25 24 23 27 27 C 1.36446 * 120.94848 * 359.97438 * 26 25 24 28 28 C 1.39693 * 119.43056 * 0.02562 * 27 26 25 29 29 C 1.47316 * 125.61425 * 342.26942 * 9 7 2 30 30 H 0.97004 * 120.00638 * 359.97438 * 1 2 3 31 31 H 1.09002 * 110.36897 * 37.06664 * 10 9 7 32 32 H 1.09003 * 110.46032 * 274.78875 * 10 9 7 33 33 H 1.09001 * 111.00486 * 278.93270 * 11 10 9 34 34 H 1.09005 * 111.03803 * 155.09652 * 11 10 9 35 35 H 1.08997 * 109.47513 * 62.55582 * 14 12 11 36 36 H 1.09006 * 109.47099 * 302.55747 * 14 12 11 37 37 H 1.08997 * 109.47412 * 59.99711 * 15 14 12 38 38 H 1.09006 * 109.46747 * 299.99993 * 15 14 12 39 39 H 0.97005 * 119.99484 * 359.97438 * 16 15 14 40 40 H 1.08000 * 119.34469 * 359.97438 * 20 19 17 41 41 H 1.08004 * 119.53900 * 180.30718 * 22 21 20 42 42 H 1.08002 * 120.25342 * 359.75349 * 24 23 22 43 43 H 1.07996 * 119.45025 * 179.97438 * 25 24 23 44 44 H 1.07997 * 119.52624 * 180.02562 * 26 25 24 45 45 H 1.07993 * 120.28132 * 180.02562 * 27 26 25 46 46 H 1.08994 * 110.06705 * 61.68806 * 29 9 7 47 47 H 1.08997 * 109.85346 * 300.41943 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.6101 1.9815 -1.3940 5 1 1.3957 2.6826 0.5844 6 1 3.4869 1.4755 0.8096 7 6 2.0103 -1.2021 0.0005 8 1 1.5389 -2.0976 0.3776 9 7 3.2927 -1.2524 -0.4771 10 6 4.2679 -2.3249 -0.2089 11 6 5.2610 -2.2638 -1.3962 12 6 5.3572 -0.7351 -1.6436 13 1 6.0753 -0.2786 -0.9624 14 6 5.7333 -0.4446 -3.0978 15 6 5.8826 1.0653 -3.2942 16 7 6.2433 1.3435 -4.6866 17 6 6.4279 2.6148 -5.0939 18 8 6.2954 3.5311 -4.3055 19 6 6.7916 2.8947 -6.4951 20 6 6.9507 1.8664 -7.4159 21 7 7.2772 2.1140 -8.6729 22 6 7.4694 3.3206 -9.1508 23 6 7.3463 4.4507 -8.3272 24 6 7.5509 5.7530 -8.8101 25 6 7.4116 6.8116 -7.9640 26 6 7.0699 6.6239 -6.6268 27 6 6.8637 5.3722 -6.1242 28 6 6.9984 4.2644 -6.9645 29 6 3.9269 -0.2411 -1.3404 30 1 -0.4851 0.8400 0.0004 31 1 3.7687 -3.2935 -0.1814 32 1 4.7884 -2.1404 0.7309 33 1 4.8579 -2.7763 -2.2696 34 1 6.2307 -2.6761 -1.1168 35 1 4.9517 -0.8213 -3.7575 36 1 6.6768 -0.9368 -3.3344 37 1 6.6642 1.4421 -2.6346 38 1 4.9391 1.5574 -3.0577 39 1 6.3494 0.6125 -5.3154 40 1 6.8056 0.8444 -7.0983 41 1 7.7296 3.4459 -10.1915 42 1 7.8162 5.9144 -9.8445 43 1 7.5696 7.8131 -8.3361 44 1 6.9658 7.4814 -5.9786 45 1 6.5988 5.2391 -5.0858 46 1 3.9676 0.7183 -0.8247 47 1 3.3645 -0.1417 -2.2688 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732060256.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:43 Heat of formation + Delta-G solvation = 48.863716 kcal Electronic energy + Delta-G solvation = -28188.034513 eV Core-core repulsion = 24336.385631 eV Total energy + Delta-G solvation = -3851.648882 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.24033 -39.52850 -38.16084 -37.73499 -35.42574 -33.32335 -32.89309 -31.56349 -31.52159 -30.13116 -29.18787 -27.24429 -25.39305 -24.43950 -23.87739 -23.18861 -22.28253 -21.14052 -20.24319 -19.85495 -18.40281 -17.83958 -17.75605 -16.97053 -16.36244 -16.12063 -15.84434 -15.52691 -15.27113 -14.71668 -14.65449 -14.39975 -14.12446 -13.76032 -13.59692 -13.46205 -13.16653 -12.98711 -12.67034 -12.55435 -12.38911 -12.29528 -12.08492 -11.81415 -11.55172 -11.38505 -11.08400 -10.81396 -10.53017 -10.48983 -10.43394 -10.25510 -10.14279 -9.79935 -9.63091 -9.48122 -9.31021 -9.23461 -8.58897 -8.49379 -7.03141 -5.92449 -3.20488 -0.33096 0.49631 1.30766 2.46856 2.85273 2.91774 3.39449 3.52214 3.54809 3.71093 3.82036 4.11058 4.26163 4.29768 4.46997 4.58101 4.61228 4.73588 4.79862 4.88097 4.93226 4.96568 5.07280 5.18109 5.23518 5.37120 5.38923 5.43126 5.50459 5.57225 5.68557 5.71090 5.79223 5.91828 5.97794 6.02825 6.08281 6.11091 6.16211 6.19126 6.29735 6.33705 6.49510 6.50114 6.62907 6.80033 6.81952 7.23892 7.45467 7.74626 7.97315 8.33778 8.86604 9.72398 10.21773 11.24046 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015485 B = 0.002468 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.724663 B =11342.796200 C =12441.995236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.021 3.979 3 Si 0.886 3.114 4 H -0.285 1.285 5 H -0.304 1.304 6 H -0.280 1.280 7 C -0.242 4.242 8 H 0.092 0.908 9 N -0.611 5.611 10 C 0.132 3.868 11 C -0.124 4.124 12 C -0.099 4.099 13 H 0.076 0.924 14 C -0.118 4.118 15 C 0.114 3.886 16 N -0.720 5.720 17 C 0.564 3.436 18 O -0.530 6.530 19 C -0.172 4.172 20 C 0.121 3.879 21 N -0.497 5.497 22 C 0.176 3.824 23 C -0.122 4.122 24 C -0.090 4.090 25 C -0.118 4.118 26 C -0.096 4.096 27 C -0.111 4.111 28 C 0.012 3.988 29 C 0.123 3.877 30 H 0.263 0.737 31 H 0.048 0.952 32 H 0.023 0.977 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.399 0.601 40 H 0.158 0.842 41 H 0.167 0.833 42 H 0.135 0.865 43 H 0.128 0.872 44 H 0.130 0.870 45 H 0.166 0.834 46 H 0.025 0.975 47 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.084 8.102 -19.865 29.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.178 4.178 3 Si 0.718 3.282 4 H -0.213 1.213 5 H -0.233 1.233 6 H -0.207 1.207 7 C -0.369 4.369 8 H 0.110 0.890 9 N -0.338 5.338 10 C 0.006 3.994 11 C -0.163 4.163 12 C -0.118 4.118 13 H 0.095 0.905 14 C -0.156 4.156 15 C -0.009 4.009 16 N -0.371 5.371 17 C 0.351 3.649 18 O -0.408 6.408 19 C -0.177 4.177 20 C -0.023 4.023 21 N -0.205 5.205 22 C 0.005 3.995 23 C -0.124 4.124 24 C -0.110 4.110 25 C -0.136 4.136 26 C -0.116 4.116 27 C -0.128 4.128 28 C 0.007 3.993 29 C -0.002 4.002 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.041 0.959 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.234 0.766 40 H 0.175 0.825 41 H 0.184 0.816 42 H 0.153 0.847 43 H 0.146 0.854 44 H 0.148 0.852 45 H 0.183 0.817 46 H 0.042 0.958 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 19.775 8.006 -19.648 29.003 hybrid contribution 0.333 1.441 0.331 1.516 sum 20.108 9.447 -19.317 29.440 Atomic orbital electron populations 1.69856 1.05544 1.26568 1.53189 1.24948 0.95136 0.97378 1.00292 0.86930 0.78817 0.84666 0.77770 1.21286 1.23254 1.20678 1.18660 0.85237 0.95594 1.37450 0.89010 1.44876 1.10838 1.22277 1.55810 1.21607 0.90234 0.92980 0.94574 1.22778 0.99134 0.94660 0.99704 1.22108 0.97916 0.97079 0.94721 0.90513 1.21789 1.02160 0.93838 0.97802 1.21586 1.01744 0.96852 0.80716 1.45947 1.70783 1.07362 1.13014 1.17820 0.77301 0.83121 0.86656 1.90667 1.51323 1.43727 1.55089 1.21915 1.06799 0.94019 0.94944 1.22758 0.92944 0.98674 0.87954 1.67119 1.13096 1.24624 1.15619 1.23312 0.90236 0.86426 0.99527 1.19017 1.03754 0.95793 0.93848 1.20961 0.99055 0.90845 1.00126 1.21021 0.99330 0.99379 0.93847 1.21227 0.97113 0.97746 0.95487 1.21843 0.97521 0.91016 1.02457 1.18919 0.95512 0.92268 0.92630 1.21792 0.90955 0.92833 0.94603 0.92743 0.93370 0.95916 0.91227 0.91589 0.90696 0.91170 0.91022 0.90540 0.76564 0.82452 0.81585 0.84671 0.85395 0.85232 0.81698 0.95754 0.94145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.60 13.97 55.49 0.78 -27.83 16 2 C 0.02 0.63 5.43 -17.43 -0.09 0.53 16 3 Si 0.89 23.63 24.39 -169.99 -4.15 19.49 16 4 H -0.29 -7.39 6.84 56.52 0.39 -7.01 16 5 H -0.30 -8.21 7.11 56.52 0.40 -7.81 16 6 H -0.28 -7.37 6.87 56.52 0.39 -6.99 16 7 C -0.24 -7.02 10.56 -15.06 -0.16 -7.18 16 8 H 0.09 2.79 8.06 -52.49 -0.42 2.37 16 9 N -0.61 -14.98 3.22 -169.84 -0.55 -15.53 16 10 C 0.13 2.56 7.23 -2.53 -0.02 2.54 16 11 C -0.12 -1.86 6.54 -24.59 -0.16 -2.02 16 12 C -0.10 -1.55 2.95 -88.79 -0.26 -1.82 16 13 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 14 C -0.12 -1.43 4.72 -26.74 -0.13 -1.56 16 15 C 0.11 1.52 5.54 -4.04 -0.02 1.50 16 16 N -0.72 -8.20 5.51 -61.38 -0.34 -8.54 16 17 C 0.56 7.59 7.77 -12.52 -0.10 7.50 16 18 O -0.53 -8.84 13.74 5.27 0.07 -8.76 16 19 C -0.17 -2.01 6.07 -102.66 -0.62 -2.63 16 20 C 0.12 1.18 10.71 -17.13 -0.18 1.00 16 21 N -0.50 -4.92 10.22 -12.58 -0.13 -5.04 16 22 C 0.18 1.43 11.00 -17.02 -0.19 1.25 16 23 C -0.12 -1.12 5.74 -106.89 -0.61 -1.74 16 24 C -0.09 -0.62 9.82 -39.49 -0.39 -1.01 16 25 C -0.12 -0.83 9.94 -39.91 -0.40 -1.23 16 26 C -0.10 -0.85 9.96 -39.84 -0.40 -1.25 16 27 C -0.11 -1.29 9.32 -39.68 -0.37 -1.66 16 28 C 0.01 0.14 5.90 -104.75 -0.62 -0.48 16 29 C 0.12 2.67 4.01 -2.90 -0.01 2.66 16 30 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 31 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 1.00 8.05 -51.93 -0.42 0.59 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.92 8.00 -51.93 -0.42 0.50 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.08 1.26 7.58 -51.93 -0.39 0.87 16 39 H 0.40 3.24 6.58 -40.82 -0.27 2.98 16 40 H 0.16 1.09 6.44 -52.49 -0.34 0.76 16 41 H 0.17 0.73 8.06 -52.48 -0.42 0.31 16 42 H 0.14 0.49 8.06 -52.49 -0.42 0.07 16 43 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 44 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 45 H 0.17 2.23 5.24 -52.49 -0.28 1.95 16 46 H 0.03 0.59 3.55 -51.93 -0.18 0.41 16 47 H 0.04 0.92 7.73 -51.93 -0.40 0.52 16 LS Contribution 375.70 15.07 5.66 5.66 Total: -1.00 -36.18 375.70 -9.89 -46.07 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -6.51 Total: 0.07 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: -4.73 Total: -5.58 kcal Atomic # 7 Polarization: -56.70 SS G_CDS: -0.24 Total: -56.94 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.07 Total: -8.76 kcal Atomic # 14 Polarization: 23.63 SS G_CDS: -4.15 Total: 19.49 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.18 -9.89 -46.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732060256.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.930 kcal (2) G-P(sol) polarization free energy of solvation -36.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds