Wall clock time and date at job start Tue Mar 31 2020 23:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86803 * 119.99762 * 2 1 4 4 H 1.48502 * 109.47182 * 264.67504 * 3 2 1 5 5 H 1.48499 * 109.47207 * 24.67290 * 3 2 1 6 6 H 1.48504 * 109.47392 * 144.67261 * 3 2 1 7 7 C 1.38813 * 120.00650 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99394 * 336.25137 * 7 2 1 9 9 N 1.36934 * 120.00103 * 156.24643 * 7 2 1 10 10 C 1.47423 * 125.64574 * 162.05279 * 9 7 2 11 11 C 1.54907 * 104.83041 * 155.90417 * 10 9 7 12 12 C 1.55154 * 101.58608 * 37.00788 * 11 10 9 13 13 H 1.09002 * 110.71799 * 83.03490 * 12 11 10 14 14 C 1.52992 * 110.72522 * 206.13548 * 12 11 10 15 15 C 1.52998 * 109.47532 * 182.55969 * 14 12 11 16 16 N 1.46501 * 109.47768 * 179.97438 * 15 14 12 17 17 C 1.34765 * 120.00627 * 179.97438 * 16 15 14 18 18 O 1.21607 * 119.99748 * 0.02562 * 17 16 15 19 19 C 1.47442 * 120.00691 * 179.97438 * 17 16 15 20 20 C 1.38953 * 121.16383 * 359.97438 * 19 17 16 21 21 N 1.32206 * 121.31233 * 180.02562 * 20 19 17 22 22 C 1.31196 * 123.69581 * 359.71715 * 21 20 19 23 23 C 1.40380 * 120.91975 * 0.54311 * 22 21 20 24 24 C 1.40390 * 122.15485 * 179.76224 * 23 22 21 25 25 C 1.36231 * 119.49258 * 179.72432 * 24 23 22 26 26 C 1.39293 * 121.10318 * 0.02562 * 25 24 23 27 27 C 1.36446 * 120.94848 * 359.97438 * 26 25 24 28 28 C 1.39693 * 119.43056 * 0.02562 * 27 26 25 29 29 C 1.47316 * 125.61425 * 342.26942 * 9 7 2 30 30 H 0.97004 * 120.00638 * 359.97438 * 1 2 3 31 31 H 1.09002 * 110.36897 * 37.06664 * 10 9 7 32 32 H 1.09003 * 110.46032 * 274.78875 * 10 9 7 33 33 H 1.09001 * 111.00486 * 278.93270 * 11 10 9 34 34 H 1.09005 * 111.03803 * 155.09652 * 11 10 9 35 35 H 1.08997 * 109.47513 * 62.55582 * 14 12 11 36 36 H 1.09006 * 109.47099 * 302.55747 * 14 12 11 37 37 H 1.08997 * 109.47412 * 59.99711 * 15 14 12 38 38 H 1.09006 * 109.46747 * 299.99993 * 15 14 12 39 39 H 0.97005 * 119.99484 * 359.97438 * 16 15 14 40 40 H 1.08000 * 119.34469 * 359.97438 * 20 19 17 41 41 H 1.08004 * 119.53900 * 180.30718 * 22 21 20 42 42 H 1.08002 * 120.25342 * 359.75349 * 24 23 22 43 43 H 1.07996 * 119.45025 * 179.97438 * 25 24 23 44 44 H 1.07997 * 119.52624 * 180.02562 * 26 25 24 45 45 H 1.07993 * 120.28132 * 180.02562 * 27 26 25 46 46 H 1.08994 * 110.06705 * 61.68806 * 29 9 7 47 47 H 1.08997 * 109.85346 * 300.41943 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.6101 1.9815 -1.3940 5 1 1.3957 2.6826 0.5844 6 1 3.4869 1.4755 0.8096 7 6 2.0103 -1.2021 0.0005 8 1 1.5389 -2.0976 0.3776 9 7 3.2927 -1.2524 -0.4771 10 6 4.2679 -2.3249 -0.2089 11 6 5.2610 -2.2638 -1.3962 12 6 5.3572 -0.7351 -1.6436 13 1 6.0753 -0.2786 -0.9624 14 6 5.7333 -0.4446 -3.0978 15 6 5.8826 1.0653 -3.2942 16 7 6.2433 1.3435 -4.6866 17 6 6.4279 2.6148 -5.0939 18 8 6.2954 3.5311 -4.3055 19 6 6.7916 2.8947 -6.4951 20 6 6.9507 1.8664 -7.4159 21 7 7.2772 2.1140 -8.6729 22 6 7.4694 3.3206 -9.1508 23 6 7.3463 4.4507 -8.3272 24 6 7.5509 5.7530 -8.8101 25 6 7.4116 6.8116 -7.9640 26 6 7.0699 6.6239 -6.6268 27 6 6.8637 5.3722 -6.1242 28 6 6.9984 4.2644 -6.9645 29 6 3.9269 -0.2411 -1.3404 30 1 -0.4851 0.8400 0.0004 31 1 3.7687 -3.2935 -0.1814 32 1 4.7884 -2.1404 0.7309 33 1 4.8579 -2.7763 -2.2696 34 1 6.2307 -2.6761 -1.1168 35 1 4.9517 -0.8213 -3.7575 36 1 6.6768 -0.9368 -3.3344 37 1 6.6642 1.4421 -2.6346 38 1 4.9391 1.5574 -3.0577 39 1 6.3494 0.6125 -5.3154 40 1 6.8056 0.8444 -7.0983 41 1 7.7296 3.4459 -10.1915 42 1 7.8162 5.9144 -9.8445 43 1 7.5696 7.8131 -8.3361 44 1 6.9658 7.4814 -5.9786 45 1 6.5988 5.2391 -5.0858 46 1 3.9676 0.7183 -0.8247 47 1 3.3645 -0.1417 -2.2688 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732060256.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:42 Heat of formation + Delta-G solvation = 23.666523 kcal Electronic energy + Delta-G solvation = -28189.127145 eV Core-core repulsion = 24336.385631 eV Total energy + Delta-G solvation = -3852.741514 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.97448 -40.48946 -39.63225 -38.39069 -36.61696 -34.87224 -33.94470 -33.08796 -32.21204 -31.21890 -30.49056 -28.62817 -26.66042 -25.76369 -24.55978 -24.19824 -23.34868 -22.11026 -21.90111 -21.10259 -19.12418 -19.02108 -18.63399 -18.45720 -17.80582 -17.08096 -16.80389 -16.68627 -16.22888 -15.95676 -15.56480 -15.44622 -15.36658 -15.00695 -14.77773 -14.67888 -14.32844 -14.20758 -13.98735 -13.74817 -13.57703 -13.21313 -13.20529 -12.96793 -12.94447 -12.75814 -12.47934 -12.42905 -12.18996 -11.83118 -11.77067 -11.47322 -11.18452 -11.15988 -11.12837 -10.79773 -10.46538 -10.30852 -10.12773 -9.18058 -9.09961 -8.25108 -5.47152 -1.02165 -0.17303 0.61059 1.22676 1.29186 1.38021 1.67404 1.93013 2.14019 2.33492 2.97744 3.01494 3.19070 3.33910 3.45695 3.58899 3.61588 3.66324 3.81556 3.83162 3.93407 3.98980 4.15152 4.22337 4.24571 4.27995 4.45296 4.47461 4.53245 4.57786 4.60802 4.72014 4.73534 4.83930 4.95307 4.99161 5.01757 5.08273 5.11638 5.18576 5.26821 5.29485 5.36675 5.46842 5.49829 5.53227 5.66238 5.85914 6.05009 6.35746 6.73628 6.77973 7.04889 7.51019 8.08572 8.95393 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015485 B = 0.002468 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.724663 B =11342.796200 C =12441.995236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.035 4.035 3 Si 0.946 3.054 4 H -0.283 1.283 5 H -0.310 1.310 6 H -0.276 1.276 7 C -0.230 4.230 8 H 0.065 0.935 9 N -0.632 5.632 10 C 0.118 3.882 11 C -0.105 4.105 12 C -0.089 4.089 13 H 0.088 0.912 14 C -0.104 4.104 15 C 0.118 3.882 16 N -0.706 5.706 17 C 0.559 3.441 18 O -0.575 6.575 19 C -0.206 4.206 20 C 0.135 3.865 21 N -0.519 5.519 22 C 0.194 3.806 23 C -0.139 4.139 24 C -0.072 4.072 25 C -0.126 4.126 26 C -0.089 4.089 27 C -0.154 4.154 28 C -0.010 4.010 29 C 0.115 3.885 30 H 0.262 0.738 31 H 0.047 0.953 32 H 0.029 0.971 33 H 0.079 0.921 34 H 0.110 0.890 35 H 0.077 0.923 36 H 0.115 0.885 37 H 0.070 0.930 38 H 0.035 0.965 39 H 0.417 0.583 40 H 0.182 0.818 41 H 0.210 0.790 42 H 0.179 0.821 43 H 0.162 0.838 44 H 0.142 0.858 45 H 0.134 0.866 46 H 0.003 0.997 47 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.749 7.949 -23.432 34.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.230 4.230 3 Si 0.778 3.222 4 H -0.210 1.210 5 H -0.239 1.239 6 H -0.202 1.202 7 C -0.359 4.359 8 H 0.083 0.917 9 N -0.359 5.359 10 C -0.006 4.006 11 C -0.143 4.143 12 C -0.109 4.109 13 H 0.106 0.894 14 C -0.142 4.142 15 C -0.006 4.006 16 N -0.359 5.359 17 C 0.348 3.652 18 O -0.456 6.456 19 C -0.211 4.211 20 C -0.009 4.009 21 N -0.227 5.227 22 C 0.023 3.977 23 C -0.141 4.141 24 C -0.091 4.091 25 C -0.143 4.143 26 C -0.109 4.109 27 C -0.171 4.171 28 C -0.015 4.015 29 C -0.010 4.010 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.047 0.953 33 H 0.098 0.902 34 H 0.128 0.872 35 H 0.095 0.905 36 H 0.133 0.867 37 H 0.088 0.912 38 H 0.054 0.946 39 H 0.255 0.745 40 H 0.199 0.801 41 H 0.227 0.773 42 H 0.196 0.804 43 H 0.180 0.820 44 H 0.160 0.840 45 H 0.152 0.848 46 H 0.020 0.980 47 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 23.495 7.804 -23.237 33.954 hybrid contribution -0.781 1.473 1.364 2.154 sum 22.714 9.278 -21.873 32.870 Atomic orbital electron populations 1.69958 1.06903 1.27065 1.56082 1.25495 0.95708 1.00179 1.01592 0.85959 0.77422 0.81077 0.77782 1.21007 1.23887 1.20221 1.18683 0.87304 0.94447 1.35482 0.91703 1.45093 1.10415 1.24261 1.56111 1.21923 0.90325 0.91172 0.97155 1.22741 0.99793 0.93945 0.97841 1.22101 0.93837 0.97606 0.97327 0.89354 1.21709 1.04396 0.92753 0.95313 1.21410 0.99699 0.97681 0.81815 1.45758 1.70019 1.07465 1.12610 1.18243 0.76542 0.83054 0.87373 1.90653 1.53410 1.45083 1.56456 1.21792 1.10096 0.95013 0.94191 1.23108 0.90923 0.99193 0.87715 1.67264 1.14567 1.25499 1.15329 1.24048 0.87208 0.85447 1.00999 1.19327 1.04407 0.97546 0.92847 1.21490 0.96244 0.89440 1.01952 1.21397 0.98894 1.01296 0.92742 1.21512 0.95381 0.96980 0.96989 1.21675 1.01091 0.92770 1.01599 1.19201 0.96041 0.92191 0.94100 1.21916 0.94600 0.91558 0.92879 0.92924 0.93493 0.95291 0.90198 0.87193 0.90474 0.86698 0.91199 0.94605 0.74498 0.80141 0.77326 0.80354 0.82028 0.84009 0.84845 0.98008 0.95862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.55 13.97 21.65 0.30 -62.24 16 2 C -0.04 -2.17 5.43 84.86 0.46 -1.71 16 3 Si 0.95 51.23 24.39 68.60 1.67 52.90 16 4 H -0.28 -14.97 6.84 99.48 0.68 -14.29 16 5 H -0.31 -16.86 7.11 99.48 0.71 -16.16 16 6 H -0.28 -14.50 6.87 99.48 0.68 -13.81 16 7 C -0.23 -13.74 10.56 84.03 0.89 -12.86 16 8 H 0.07 4.12 8.06 -2.91 -0.02 4.10 16 9 N -0.63 -31.10 3.22 -691.25 -2.22 -33.32 16 10 C 0.12 4.42 7.23 86.85 0.63 5.04 16 11 C -0.11 -2.73 6.54 31.98 0.21 -2.52 16 12 C -0.09 -2.57 2.95 -9.61 -0.03 -2.60 16 13 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 14 C -0.10 -2.22 4.72 30.59 0.14 -2.08 16 15 C 0.12 3.10 5.54 86.38 0.48 3.58 16 16 N -0.71 -15.80 5.51 -466.37 -2.57 -18.37 16 17 C 0.56 15.78 7.77 86.67 0.67 16.46 16 18 O -0.57 -20.90 13.74 -4.05 -0.06 -20.95 16 19 C -0.21 -4.89 6.07 -18.60 -0.11 -5.00 16 20 C 0.13 2.44 10.71 84.81 0.91 3.35 16 21 N -0.52 -8.93 10.22 -193.72 -1.98 -10.91 16 22 C 0.19 2.49 11.00 85.31 0.94 3.43 16 23 C -0.14 -2.25 5.74 -21.34 -0.12 -2.37 16 24 C -0.07 -0.72 9.82 22.33 0.22 -0.50 16 25 C -0.13 -1.42 9.94 22.06 0.22 -1.20 16 26 C -0.09 -1.56 9.96 22.10 0.22 -1.34 16 27 C -0.15 -3.84 9.32 22.20 0.21 -3.63 16 28 C -0.01 -0.24 5.90 -19.94 -0.12 -0.36 16 29 C 0.11 4.98 4.01 86.68 0.35 5.33 16 30 H 0.26 16.38 8.31 -92.71 -0.77 15.61 16 31 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.08 1.95 8.05 -2.39 -0.02 1.93 16 34 H 0.11 2.01 8.14 -2.38 -0.02 1.99 16 35 H 0.08 1.67 8.00 -2.39 -0.02 1.65 16 36 H 0.11 1.55 8.14 -2.38 -0.02 1.53 16 37 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.04 1.24 7.58 -2.38 -0.02 1.22 16 39 H 0.42 5.99 6.58 -92.70 -0.61 5.38 16 40 H 0.18 2.11 6.44 -2.91 -0.02 2.09 16 41 H 0.21 0.71 8.06 -2.91 -0.02 0.68 16 42 H 0.18 0.20 8.06 -2.91 -0.02 0.18 16 43 H 0.16 0.72 8.06 -2.91 -0.02 0.70 16 44 H 0.14 1.94 8.06 -2.91 -0.02 1.91 16 45 H 0.13 4.13 5.24 -2.91 -0.02 4.12 16 46 H 0.00 0.12 3.55 -2.39 -0.01 0.11 16 47 H 0.02 1.08 7.73 -2.39 -0.02 1.06 16 Total: -1.00 -86.53 375.70 1.65 -84.88 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: 0.34 Total: 6.99 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: 6.16 Total: 1.02 kcal Atomic # 7 Polarization: -118.37 SS G_CDS: -6.47 Total: -124.84 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -0.06 Total: -20.95 kcal Atomic # 14 Polarization: 51.23 SS G_CDS: 1.67 Total: 52.90 kcal Total: -86.53 1.65 -84.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732060256.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.550 kcal (2) G-P(sol) polarization free energy of solvation -86.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds