Wall clock time and date at job start Tue Mar 31 2020 22:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86809 * 119.99769 * 2 1 4 4 H 1.48492 * 109.47122 * 240.00083 * 3 2 1 5 5 H 1.48505 * 109.46753 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47130 * 119.99857 * 3 2 1 7 7 C 1.38812 * 120.00334 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99649 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00034 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99933 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47075 * 184.93020 * 10 9 7 12 12 H 1.09004 * 110.00314 * 54.21627 * 11 10 9 13 13 C 1.54340 * 109.99554 * 293.18048 * 11 10 9 14 14 C 1.55154 * 103.02162 * 218.66667 * 13 11 10 15 15 C 1.54904 * 101.58156 * 35.30464 * 14 13 11 16 16 N 1.47018 * 109.88681 * 175.31198 * 11 10 9 17 17 C 1.34781 * 125.64879 * 298.40209 * 16 11 10 18 18 O 1.21277 * 119.99727 * 354.64062 * 17 16 11 19 19 C 1.50698 * 120.00017 * 174.64706 * 17 16 11 20 20 C 1.50707 * 109.46932 * 179.97438 * 19 17 16 21 21 C 1.39357 * 119.46425 * 89.99876 * 20 19 17 22 22 C 1.36136 * 120.86448 * 179.97438 * 21 20 19 23 23 C 1.40426 * 119.61454 * 0.02562 * 22 21 20 24 24 C 1.40770 * 121.36943 * 180.02562 * 23 22 21 25 25 C 1.36585 * 118.14783 * 179.97438 * 24 23 22 26 26 C 1.39329 * 119.93287 * 359.97438 * 25 24 23 27 27 N 1.31089 * 121.75226 * 0.02562 * 26 25 24 28 28 C 1.33682 * 121.31870 * 359.97438 * 27 26 25 29 29 C 1.36074 * 119.46475 * 269.99827 * 20 19 17 30 30 H 0.96998 * 120.00583 * 0.02562 * 1 2 3 31 31 H 0.96999 * 120.00246 * 359.97438 * 9 7 2 32 32 H 1.09007 * 109.47250 * 64.93455 * 10 9 7 33 33 H 1.08996 * 109.47353 * 304.92811 * 10 9 7 34 34 H 1.08996 * 110.84915 * 100.19070 * 13 11 10 35 35 H 1.09000 * 110.66152 * 337.04666 * 13 11 10 36 36 H 1.08999 * 111.00350 * 277.22955 * 14 13 11 37 37 H 1.09000 * 111.03474 * 153.39701 * 14 13 11 38 38 H 1.09006 * 110.36587 * 204.14999 * 15 14 13 39 39 H 1.08994 * 110.46280 * 81.87804 * 15 14 13 40 40 H 1.09001 * 109.47373 * 59.99899 * 19 17 16 41 41 H 1.08998 * 109.47464 * 299.99481 * 19 17 16 42 42 H 1.08000 * 119.56458 * 0.25870 * 21 20 19 43 43 H 1.07996 * 120.19194 * 180.02562 * 22 21 20 44 44 H 1.07999 * 120.92930 * 359.95645 * 24 23 22 45 45 H 1.08000 * 120.02947 * 179.97438 * 25 24 23 46 46 H 1.07997 * 119.12257 * 179.97438 * 26 25 24 47 47 H 1.07998 * 120.12961 * 359.97438 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6966 -1.2124 5 1 1.2850 2.7465 -0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0016 10 6 2.0583 -3.6567 -0.0016 11 6 1.0689 -4.8169 -0.1269 12 1 0.4357 -4.6741 -1.0025 13 6 0.1940 -4.9037 1.1417 14 6 0.0581 -6.4325 1.3687 15 6 1.4479 -6.9398 0.9097 16 7 1.7999 -6.0874 -0.2405 17 6 2.6548 -6.4161 -1.2292 18 8 2.8011 -5.6729 -2.1763 19 6 3.4288 -7.7072 -1.1579 20 6 4.3057 -7.8351 -2.3769 21 6 5.6015 -7.3232 -2.3459 22 6 6.4181 -7.4236 -3.4305 23 6 5.9495 -8.0505 -4.5964 24 6 6.7625 -8.1750 -5.7389 25 6 6.2400 -8.7971 -6.8368 26 6 4.9363 -9.2874 -6.8034 27 7 4.1820 -9.1697 -5.7377 28 6 4.6325 -8.5716 -4.6303 29 6 3.8193 -8.4486 -3.4899 30 1 -0.4851 0.8400 -0.0004 31 1 0.3558 -2.3881 -0.0016 32 1 2.6164 -3.7541 0.9297 33 1 2.7502 -3.6768 -0.8436 34 1 -0.7826 -4.4507 0.9711 35 1 0.6943 -4.4313 1.9870 36 1 -0.7348 -6.8506 0.7485 37 1 -0.1122 -6.6581 2.4214 38 1 1.3884 -7.9844 0.6036 39 1 2.1799 -6.8205 1.7084 40 1 2.7337 -8.5460 -1.1212 41 1 4.0492 -7.7099 -0.2618 42 1 5.9641 -6.8447 -1.4482 43 1 7.4206 -7.0234 -3.3944 44 1 7.7711 -7.7891 -5.7471 45 1 6.8369 -8.9089 -7.7299 46 1 4.5362 -9.7768 -7.6791 47 1 2.8129 -8.8402 -3.4971 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733342778.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:54 Heat of formation + Delta-G solvation = 34.479675 kcal Electronic energy + Delta-G solvation = -28361.600570 eV Core-core repulsion = 24509.327949 eV Total energy + Delta-G solvation = -3852.272620 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.03668 -40.03148 -37.96412 -36.87196 -34.49160 -33.82803 -32.42236 -31.43232 -31.27159 -30.28864 -28.86698 -27.79242 -25.06805 -24.31043 -23.61337 -22.67467 -22.23576 -21.99285 -20.59761 -18.90228 -18.02338 -17.27217 -17.17790 -17.02034 -16.70304 -16.27595 -15.17761 -14.73847 -14.63599 -14.53917 -14.45272 -14.35021 -13.91745 -13.70874 -13.38813 -13.24358 -13.22451 -12.99867 -12.68712 -12.67064 -12.26175 -12.16199 -11.74262 -11.70132 -11.55140 -11.46845 -11.13242 -10.89179 -10.79504 -10.71459 -10.52842 -10.39080 -10.03815 -9.75792 -9.68232 -9.59011 -8.83752 -8.80414 -8.41527 -8.38884 -6.86780 -5.71402 -2.99555 0.23336 0.63447 1.83940 2.67040 2.79080 3.16397 3.48169 3.52069 3.53758 3.94560 4.05983 4.37630 4.45271 4.55486 4.60852 4.61845 4.66703 4.67769 4.79205 4.88687 4.98706 5.06988 5.09127 5.20479 5.27753 5.34378 5.39581 5.45113 5.59052 5.61915 5.63394 5.74147 5.79178 5.81639 5.91369 5.95038 6.07051 6.09756 6.18500 6.19773 6.32017 6.36878 6.43594 6.56657 6.67531 6.85497 6.99830 7.69650 7.73677 7.75662 8.35253 8.47842 9.58467 10.15148 10.50839 11.51672 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011225 B = 0.002643 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2493.922709 B =10592.087868 C =12270.481703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.235 4.235 8 H 0.068 0.932 9 N -0.728 5.728 10 C 0.148 3.852 11 C 0.130 3.870 12 H 0.076 0.924 13 C -0.122 4.122 14 C -0.134 4.134 15 C 0.099 3.901 16 N -0.614 5.614 17 C 0.526 3.474 18 O -0.519 6.519 19 C -0.101 4.101 20 C -0.042 4.042 21 C -0.095 4.095 22 C -0.098 4.098 23 C -0.102 4.102 24 C -0.057 4.057 25 C -0.181 4.181 26 C 0.126 3.874 27 N -0.473 5.473 28 C 0.129 3.871 29 C -0.080 4.080 30 H 0.255 0.745 31 H 0.383 0.617 32 H 0.014 0.986 33 H 0.035 0.965 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.103 0.897 41 H 0.105 0.895 42 H 0.128 0.872 43 H 0.131 0.869 44 H 0.137 0.863 45 H 0.136 0.864 46 H 0.157 0.843 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.055 -24.852 -3.908 27.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.366 4.366 8 H 0.086 0.914 9 N -0.372 5.372 10 C 0.020 3.980 11 C 0.028 3.972 12 H 0.094 0.906 13 C -0.160 4.160 14 C -0.172 4.172 15 C -0.024 4.024 16 N -0.350 5.350 17 C 0.313 3.687 18 O -0.394 6.394 19 C -0.141 4.141 20 C -0.044 4.044 21 C -0.113 4.113 22 C -0.116 4.116 23 C -0.104 4.104 24 C -0.083 4.083 25 C -0.200 4.200 26 C -0.046 4.046 27 N -0.181 5.181 28 C 0.008 3.992 29 C -0.098 4.098 30 H 0.065 0.935 31 H 0.217 0.783 32 H 0.032 0.968 33 H 0.053 0.947 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.121 0.879 41 H 0.123 0.877 42 H 0.146 0.854 43 H 0.149 0.851 44 H 0.155 0.845 45 H 0.154 0.846 46 H 0.175 0.825 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 9.430 -24.644 -4.389 26.749 hybrid contribution 1.022 1.364 -0.033 1.704 sum 10.453 -23.280 -4.422 25.899 Atomic orbital electron populations 1.69643 1.05063 1.25699 1.58017 1.24719 0.95542 0.97603 1.03157 0.86253 0.78514 0.83519 0.77845 1.21274 1.21673 1.21313 1.19166 0.90973 0.84048 1.42397 0.91358 1.42191 1.05749 0.99709 1.89583 1.20917 0.93660 0.85237 0.98217 1.21816 0.93494 0.83434 0.98499 0.90583 1.22675 1.00676 0.95026 0.97611 1.22788 0.96027 0.96649 1.01741 1.22329 0.96931 0.94443 0.88701 1.48555 1.44649 1.17783 1.23971 1.20022 0.79382 0.87644 0.81646 1.90796 1.64448 1.52331 1.31782 1.20743 0.98509 0.97113 0.97686 1.19052 0.94085 0.96639 0.94644 1.20804 0.93196 0.98119 0.99142 1.20915 1.00097 0.98645 0.91989 1.18851 0.95109 1.00827 0.95627 1.21481 0.99452 0.95393 0.91947 1.21861 0.97498 1.00988 0.99698 1.22937 0.90589 0.95105 0.96017 1.68022 1.36081 1.14514 0.99488 1.18789 0.91381 0.96036 0.92958 1.20564 0.99317 0.99375 0.90572 0.93511 0.78313 0.96814 0.94741 0.89802 0.89944 0.90799 0.89978 0.90901 0.91298 0.87894 0.87661 0.85381 0.85106 0.84472 0.84647 0.82534 0.84880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.91 13.06 55.49 0.72 -28.19 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 23.15 29.55 -169.99 -5.02 18.13 16 4 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 5 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 6 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 7 C -0.23 -6.88 9.99 -15.06 -0.15 -7.03 16 8 H 0.07 1.97 7.83 -52.48 -0.41 1.56 16 9 N -0.73 -19.32 5.45 -59.91 -0.33 -19.65 16 10 C 0.15 3.27 5.66 -4.05 -0.02 3.25 16 11 C 0.13 2.29 2.92 -66.95 -0.20 2.10 16 12 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 13 C -0.12 -1.76 6.09 -24.89 -0.15 -1.91 16 14 C -0.13 -1.35 7.09 -24.59 -0.17 -1.52 16 15 C 0.10 0.98 6.65 -2.53 -0.02 0.96 16 16 N -0.61 -8.83 3.06 -163.02 -0.50 -9.33 16 17 C 0.53 8.04 7.56 -10.98 -0.08 7.96 16 18 O -0.52 -10.60 15.22 5.56 0.08 -10.51 16 19 C -0.10 -1.04 4.89 -29.03 -0.14 -1.18 16 20 C -0.04 -0.51 4.34 -104.98 -0.46 -0.96 16 21 C -0.09 -1.08 9.59 -39.92 -0.38 -1.46 16 22 C -0.10 -1.05 9.77 -39.51 -0.39 -1.44 16 23 C -0.10 -1.21 5.74 -106.80 -0.61 -1.83 16 24 C -0.06 -0.52 9.90 -39.22 -0.39 -0.91 16 25 C -0.18 -1.49 10.03 -39.77 -0.40 -1.89 16 26 C 0.13 1.24 11.15 -17.46 -0.19 1.04 16 27 N -0.47 -6.19 10.34 -10.98 -0.11 -6.31 16 28 C 0.13 1.75 6.60 -84.86 -0.56 1.19 16 29 C -0.08 -1.04 9.58 -39.47 -0.38 -1.41 16 30 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 31 H 0.38 10.45 7.44 -40.82 -0.30 10.15 16 32 H 0.01 0.31 8.04 -51.93 -0.42 -0.11 16 33 H 0.03 0.86 6.90 -51.93 -0.36 0.50 16 34 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.08 1.27 7.78 -51.93 -0.40 0.87 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.52 7.51 -51.93 -0.39 0.13 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.10 0.80 7.69 -51.93 -0.40 0.40 16 41 H 0.11 0.83 8.08 -51.93 -0.42 0.41 16 42 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 43 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 44 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 45 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 46 H 0.16 1.02 8.06 -52.49 -0.42 0.59 16 47 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 389.69 15.07 5.87 5.87 Total: -1.00 -37.46 389.69 -10.96 -48.43 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -6.89 Total: 7.14 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: -4.79 Total: -5.59 kcal Atomic # 7 Polarization: -63.26 SS G_CDS: -0.22 Total: -63.47 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.08 Total: -10.51 kcal Atomic # 14 Polarization: 23.15 SS G_CDS: -5.02 Total: 18.13 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -37.46 -10.96 -48.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733342778.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.905 kcal (2) G-P(sol) polarization free energy of solvation -37.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds