Wall clock time and date at job start Tue Mar 31 2020 22:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 119.99698 * 2 1 4 4 H 1.48501 * 109.47477 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47172 * 300.00041 * 3 2 1 6 6 H 1.48502 * 109.47210 * 59.99926 * 3 2 1 7 7 C 1.38810 * 119.99933 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99423 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00392 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99724 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46600 * 179.97438 * 10 9 7 12 12 C 1.53788 * 113.61334 * 174.99669 * 11 10 9 13 13 C 1.53783 * 87.08043 * 139.98082 * 12 11 10 14 14 N 1.46501 * 113.61350 * 89.11916 * 13 12 11 15 15 C 1.34773 * 120.00045 * 156.53232 * 14 13 12 16 16 O 1.21278 * 120.00253 * 359.97438 * 15 14 13 17 17 C 1.50703 * 120.00012 * 179.97438 * 15 14 13 18 18 C 1.50698 * 109.47290 * 179.97438 * 17 15 14 19 19 C 1.36108 * 120.12713 * 264.98042 * 18 17 15 20 20 C 1.39318 * 121.06886 * 179.97438 * 19 18 17 21 21 C 1.36179 * 120.86533 * 0.07008 * 20 19 18 22 22 C 1.40384 * 119.61244 * 359.90676 * 21 20 19 23 23 C 1.40777 * 121.38008 * 179.78645 * 22 21 20 24 24 C 1.36573 * 118.15205 * 179.80616 * 23 22 21 25 25 C 1.39341 * 119.93796 * 0.49645 * 24 23 22 26 26 N 1.31078 * 121.75112 * 359.72301 * 25 24 23 27 27 C 1.33686 * 121.32444 * 0.02562 * 26 25 24 28 28 C 1.53784 * 87.17295 * 334.52754 * 13 12 11 29 29 H 0.96999 * 120.00750 * 0.02562 * 1 2 3 30 30 H 0.96999 * 119.99501 * 0.02562 * 9 7 2 31 31 H 1.08994 * 109.47546 * 60.00134 * 10 9 7 32 32 H 1.09000 * 109.47202 * 299.99656 * 10 9 7 33 33 H 1.09000 * 112.85221 * 43.80256 * 11 10 9 34 34 H 1.09003 * 113.61317 * 25.43780 * 12 11 10 35 35 H 1.08999 * 113.61277 * 254.53052 * 12 11 10 36 36 H 1.09000 * 113.61644 * 219.93398 * 13 12 11 37 37 H 0.97001 * 119.99714 * 336.52606 * 14 13 12 38 38 H 1.09005 * 109.46915 * 59.99333 * 17 15 14 39 39 H 1.09003 * 109.46924 * 299.99650 * 17 15 14 40 40 H 1.08000 * 119.46913 * 0.02562 * 19 18 17 41 41 H 1.07992 * 119.56580 * 180.02562 * 20 19 18 42 42 H 1.07992 * 120.19104 * 179.97438 * 21 20 19 43 43 H 1.08002 * 120.92806 * 0.28428 * 23 22 21 44 44 H 1.08001 * 120.03101 * 180.23980 * 24 23 22 45 45 H 1.08001 * 119.11998 * 179.73496 * 25 24 23 46 46 H 1.09002 * 113.61209 * 140.01962 * 28 13 12 47 47 H 1.08999 * 113.61269 * 270.92285 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 6 1.0640 -4.8197 0.0001 12 6 1.7306 -6.2001 -0.1227 13 6 0.7055 -6.6997 0.9090 14 7 -0.5382 -7.1907 0.3102 15 6 -1.3104 -8.0664 0.9834 16 8 -0.9756 -8.4483 2.0847 17 6 -2.5900 -8.5711 0.3677 18 6 -3.2597 -9.5310 1.3168 19 6 -3.0538 -10.8706 1.1918 20 6 -3.6626 -11.7756 2.0587 21 6 -4.4832 -11.3438 3.0560 22 6 -4.7178 -9.9688 3.2148 23 6 -5.5627 -9.4818 4.2301 24 6 -5.7412 -8.1313 4.3272 25 6 -5.1029 -7.2791 3.4284 26 7 -4.3205 -7.7362 2.4813 27 6 -4.0994 -9.0464 2.3344 28 6 0.6168 -5.2486 1.4105 29 1 -0.4851 0.8400 -0.0004 30 1 0.3556 -2.3881 -0.0005 31 1 2.6849 -3.7145 0.8894 32 1 2.6848 -3.7144 -0.8905 33 1 0.2376 -4.6705 -0.6949 34 1 2.7591 -6.2220 0.2378 35 1 1.6163 -6.6541 -1.1071 36 1 1.1240 -7.3900 1.6414 37 1 -0.8058 -6.8855 -0.5708 38 1 -2.3657 -9.0829 -0.5682 39 1 -3.2551 -7.7301 0.1715 40 1 -2.4075 -11.2381 0.4085 41 1 -3.4820 -12.8334 1.9377 42 1 -4.9497 -12.0548 3.7215 43 1 -6.0499 -10.1569 4.9181 44 1 -6.3798 -7.7245 5.0974 45 1 -5.2568 -6.2136 3.5146 46 1 -0.3961 -4.9351 1.6631 47 1 1.3413 -5.0109 2.1894 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733951980.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:19 Heat of formation + Delta-G solvation = 47.239547 kcal Electronic energy + Delta-G solvation = -27875.058843 eV Core-core repulsion = 24023.339532 eV Total energy + Delta-G solvation = -3851.719311 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.17611 -40.01610 -38.32475 -37.26446 -34.49952 -34.27229 -33.05918 -31.56267 -30.77346 -30.75277 -28.03116 -26.53262 -25.43119 -24.43488 -23.82178 -23.38591 -21.99099 -21.29743 -20.39680 -18.99872 -18.51815 -17.22807 -17.17447 -17.04478 -16.89123 -15.83400 -15.31000 -14.86607 -14.84794 -14.62128 -14.43798 -14.31774 -14.03297 -13.90045 -13.47990 -13.33440 -13.24605 -13.16553 -12.78301 -12.35000 -12.18556 -12.04674 -11.94603 -11.84847 -11.56116 -11.45390 -10.99672 -10.81848 -10.72054 -10.41686 -10.28167 -10.02593 -9.82334 -9.76756 -9.65560 -9.56112 -8.98624 -8.90692 -8.79611 -8.40758 -6.85933 -5.72255 -3.00228 0.14727 0.61730 1.74035 2.68243 2.70775 3.23050 3.45754 3.51183 3.53575 3.90825 4.09303 4.23127 4.47343 4.51124 4.61617 4.65696 4.73014 4.77186 4.87809 4.89067 4.93674 5.07264 5.09164 5.17810 5.19707 5.22997 5.34850 5.54808 5.62089 5.74978 5.77085 5.79836 5.83544 5.93449 5.99983 6.08270 6.13242 6.16610 6.17301 6.28675 6.33545 6.39290 6.49539 6.62231 6.71871 6.83870 6.99991 7.56129 7.74249 7.74778 8.29769 8.47029 9.57931 10.17752 10.52211 11.50849 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016063 B = 0.002125 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.730225 B =13176.150544 C =14502.865565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.017 4.017 3 Si 0.906 3.094 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.732 5.732 10 C 0.162 3.838 11 C -0.112 4.112 12 C -0.138 4.138 13 C 0.118 3.882 14 N -0.711 5.711 15 C 0.525 3.475 16 O -0.536 6.536 17 C -0.098 4.098 18 C -0.035 4.035 19 C -0.095 4.095 20 C -0.112 4.112 21 C -0.100 4.100 22 C -0.103 4.103 23 C -0.060 4.060 24 C -0.176 4.176 25 C 0.132 3.868 26 N -0.466 5.466 27 C 0.142 3.858 28 C -0.139 4.139 29 H 0.254 0.746 30 H 0.383 0.617 31 H 0.020 0.980 32 H 0.018 0.982 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.068 0.932 36 H 0.096 0.904 37 H 0.401 0.599 38 H 0.101 0.899 39 H 0.114 0.886 40 H 0.128 0.872 41 H 0.128 0.872 42 H 0.128 0.872 43 H 0.137 0.863 44 H 0.137 0.863 45 H 0.160 0.840 46 H 0.068 0.932 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.882 -26.770 3.589 29.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.212 4.212 3 Si 0.738 3.262 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.368 4.368 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.035 3.965 11 C -0.131 4.131 12 C -0.176 4.176 13 C 0.012 3.988 14 N -0.362 5.362 15 C 0.311 3.689 16 O -0.412 6.412 17 C -0.138 4.138 18 C -0.036 4.036 19 C -0.115 4.115 20 C -0.130 4.130 21 C -0.119 4.119 22 C -0.105 4.105 23 C -0.086 4.086 24 C -0.195 4.195 25 C -0.040 4.040 26 N -0.174 5.174 27 C 0.020 3.980 28 C -0.177 4.177 29 H 0.064 0.936 30 H 0.217 0.783 31 H 0.037 0.963 32 H 0.036 0.964 33 H 0.106 0.894 34 H 0.112 0.888 35 H 0.087 0.913 36 H 0.114 0.886 37 H 0.235 0.765 38 H 0.119 0.881 39 H 0.132 0.868 40 H 0.146 0.854 41 H 0.145 0.855 42 H 0.146 0.854 43 H 0.155 0.845 44 H 0.155 0.845 45 H 0.177 0.823 46 H 0.087 0.913 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.015 -26.426 3.744 28.873 hybrid contribution -0.432 0.698 0.272 0.865 sum -11.447 -25.728 4.016 28.445 Atomic orbital electron populations 1.69670 1.05089 1.25435 1.58096 1.24742 0.95534 0.97677 1.03270 0.86122 0.78770 0.84202 0.77152 1.20592 1.21920 1.21907 1.19296 0.91048 0.84285 1.42177 0.91206 1.42361 1.05864 1.00008 1.89346 1.20639 0.93035 0.85263 0.97600 1.22796 0.99038 0.94128 0.97138 1.23304 0.98842 0.96664 0.98824 1.21894 0.84504 0.95885 0.96470 1.45659 1.23372 1.45834 1.21304 1.20325 0.84538 0.78401 0.85600 1.90700 1.72585 1.58102 1.19839 1.20565 0.95215 1.00138 0.97905 1.18928 0.95984 0.93646 0.95074 1.20761 0.98877 0.92225 0.99598 1.20854 0.97020 0.99922 0.95220 1.20951 0.98784 0.93753 0.98412 1.18804 0.99467 0.94811 0.97388 1.21445 0.95317 0.96005 0.95857 1.21908 1.02088 0.94334 1.01217 1.23026 0.90613 1.00776 0.89623 1.68009 1.14292 1.14151 1.20931 1.18625 0.95917 0.88800 0.94617 1.23445 1.02432 0.94322 0.97533 0.93630 0.78318 0.96270 0.96442 0.89416 0.88839 0.91301 0.88629 0.76467 0.88064 0.86829 0.85363 0.85454 0.85370 0.84531 0.84534 0.82276 0.91287 0.89341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.79 13.06 55.49 0.72 -28.07 16 2 C -0.02 -0.49 5.50 -17.43 -0.10 -0.58 16 3 Si 0.91 22.81 29.55 -169.99 -5.02 17.79 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 7 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 8 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 9 N -0.73 -18.98 5.60 -59.91 -0.34 -19.31 16 10 C 0.16 3.31 6.10 -4.04 -0.02 3.28 16 11 C -0.11 -1.80 3.65 -89.66 -0.33 -2.12 16 12 C -0.14 -1.73 7.38 -25.91 -0.19 -1.92 16 13 C 0.12 1.59 4.30 -67.11 -0.29 1.30 16 14 N -0.71 -8.60 5.26 -53.01 -0.28 -8.88 16 15 C 0.53 7.07 7.82 -10.99 -0.09 6.98 16 16 O -0.54 -9.41 15.65 5.56 0.09 -9.32 16 17 C -0.10 -1.02 5.56 -29.03 -0.16 -1.18 16 18 C -0.04 -0.41 4.38 -104.52 -0.46 -0.87 16 19 C -0.09 -0.90 9.56 -39.95 -0.38 -1.28 16 20 C -0.11 -0.93 9.96 -39.92 -0.40 -1.32 16 21 C -0.10 -0.86 9.78 -39.51 -0.39 -1.25 16 22 C -0.10 -1.11 5.74 -106.80 -0.61 -1.72 16 23 C -0.06 -0.52 9.90 -39.22 -0.39 -0.91 16 24 C -0.18 -1.49 10.03 -39.77 -0.40 -1.89 16 25 C 0.13 1.41 11.15 -17.46 -0.19 1.21 16 26 N -0.47 -6.23 9.51 -10.98 -0.10 -6.33 16 27 C 0.14 1.82 6.58 -84.86 -0.56 1.26 16 28 C -0.14 -2.21 7.45 -25.78 -0.19 -2.40 16 29 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 30 H 0.38 10.46 7.67 -40.82 -0.31 10.14 16 31 H 0.02 0.40 7.85 -51.93 -0.41 -0.01 16 32 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 34 H 0.09 1.12 8.10 -51.93 -0.42 0.70 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.10 1.39 7.50 -51.93 -0.39 1.00 16 37 H 0.40 3.91 8.70 -40.82 -0.36 3.56 16 38 H 0.10 0.71 8.04 -51.93 -0.42 0.29 16 39 H 0.11 1.17 7.72 -51.93 -0.40 0.77 16 40 H 0.13 0.91 8.04 -52.49 -0.42 0.49 16 41 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 42 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 43 H 0.14 0.75 8.06 -52.49 -0.42 0.32 16 44 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 45 H 0.16 1.33 8.06 -52.49 -0.42 0.90 16 46 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 47 H 0.09 1.44 7.90 -51.93 -0.41 1.03 16 LS Contribution 395.29 15.07 5.96 5.96 Total: -1.00 -36.83 395.29 -11.16 -47.98 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -6.89 Total: 10.51 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: -5.29 Total: -10.33 kcal Atomic # 7 Polarization: -62.59 SS G_CDS: 0.01 Total: -62.59 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.09 Total: -9.32 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.79 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.83 -11.16 -47.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733951980.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.221 kcal (2) G-P(sol) polarization free energy of solvation -36.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds